BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38710.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494099 jgi|Araly1|494099|fgenesh2_kg.7__3532__AT5G38710.1 2412 0.0
> Ahg494099 jgi|Araly1|494099|fgenesh2_kg.7__3532__AT5G38710.1
Length=1689
Score = 2412 bits (1306), Expect = 0.0
Identities = 1569/1694 (93%), Gaps = 26/1694 (2%)
Strand=Plus/Plus
Query 1 acaaaccccaacacacaaaaacgcttgtgaaaaataaaaagagaaacccaaaaacagaac 60
||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||||
Sbjct 1 ACAAACCCCAACACACAAAAACGCTTGTGAACAA-AAAAAGAGAAACCAAAAAACCGAAC 59
Query 61 aaaagaaagaaaacaaaacGTTCTTAAGAGTTTAAATGGCAAACCGTTTCCTCCGACCAA 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 AAAAGAAAGAAAACAAAACGTTCTTAA-AGTTTAAATGGCAAACCGTTTCCTCCGACCAA 118
Query 121 ACCTCATCCACCGTTTCTCCACCGTGAGTCCCGTCGGTCCTCCGACCACCATCATCCCAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 119 ACCTCATCCACCGTTTCTCCACCGTGAGTCCCGTCGGTCCTCCGACCACCGTCATCCCGG 178
Query 181 AAATCCTTTCCTTTGACCAACCAAAACCAGAAGTTGATCTAGATCTCTCCGACCAAGCTC 240
| || |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 179 AGATTCTTTCCTTTGACCAACCAAAACAAGACGTTGACCTAGATCTCTCCGACCAAGCTC 238
Query 241 GACTCTTTGCTTCTGTCCCAATCTCCACCCTCCTCCGCTCAACCGCAATTCTCCATGCCA 300
|||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
Sbjct 239 GACTCTTTGCTTCTGTCCCAATCTCCACCCTCCTTCGCTCAACCGCAGTTCTTCATGCTA 298
Query 301 CGTCCATAGGCCCTATGGTCGATCTTGGCTCGTGGCTCATGAGTTCCAAGCTCATGGACA 360
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 CGTCCATAGGCCCTATGGTAGATCTTGGCTCATGGCTCATGAGTTCCAAGCTCATGGACA 358
Query 361 CGACCGTTACACGCGATCTAGTACTCCGTATCGTGAAAGGAACGTTTTACGACCATTTCT 420
|||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||
Sbjct 359 CGACCGTTACACGCGATCTAATACTCCGTGTCGTAAAAGGAACGTTTTATGACCATTTCT 418
Query 421 GCGCCGGTGAAGACGCGGCTGCCGCAGCAAGGCGCGTGAGTAGCGTGTATGAGTCGACGG 480
||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 419 GCGCCGGCGAAGATGCGGCTGCCGCTGCAAGGCGCGTGAGTAGCATGTATGAGTCGACGG 478
Query 481 GACTTAAAGGTATGTTAGTGTACGGCGTAGAACACGCTGAAGACGGTGGCGCATGTGATG 540
|||||||||||||||| ||||| ||||| ||||| || |||||| ||||||| |||||||
Sbjct 479 GACTTAAAGGTATGTTGGTGTATGGCGTTGAACATGCCGAAGACAGTGGCGCGTGTGATG 538
Query 541 AAAACATTCAAAAATTCATTGAAACCGTCGAAGCTGCTAAAACCCTACCTTCGTCTCACT 600
|||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 539 AAAACATTCAGAAATTCATTGAAACCGTCGAAGCTGCTAAAAGCCTACCTACGTCTCACT 598
Query 601 TAAGCTCAGTGGTGGTCAAGATCACAGCGATTTGTCCAATGAATGTCCTAAAACGGGTTA 660
|||||||||||||| |||| |||||||||||||||||||||||| |||| ||||| ||||
Sbjct 599 TAAGCTCAGTGGTGATCAAAATCACAGCGATTTGTCCAATGAATCTCCTGAAACGAGTTA 658
Query 661 GTGATTTGCTTCGGTGGCAATACAAGAACCCTAATTTCAAACTTCCATGGAAACTCAATT 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTGATTTGCTCCGGTGGCAATACAAGAACCCTAATTTCAAACTTCCATGGAAACTCAATT 718
Query 721 CATTTCCGGTTTTCTCCGGCTTAAGTCCTCTGTACCACACAACGTCTGAACCGGAACCAT 780
||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct 719 CATTTCCGGTTTTCTCCGGTTTAAGTCCTCTCTACCACACTACTTCTGAACCGGAACCAT 778
Query 781 TAACCGTAGAGGAAGAACGAGAGCTTGAAAAAGCTCATGAACGCCTCAAATCCGTGTGTC 840
|||||| |||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 779 TAACCGCAGAGGAAGAACGAGAGCTAGAAAAAGCTCACGAACGCCTCAAATCTGTCTGTA 838
Query 841 TTAGATGTCAAGAATCGAACGTACCGTTACTAATTGATGCCGAAGACACCATTCTCCAAC 900
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 839 AAAGATGTCAAGAATCGAACGTACCGTTACTAATCGATGCGGAAGACACAATTCTCCAAC 898
Query 901 CAGCAATCGATTACATGGCGTATTGGTCGGCGATTATGTTCAATTCGGATAAAGATCGAC 960
| || || ||||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 899 CGGCGATTGATTACATGGCTTATTGGTCGGCGATTATGTTCAATTCTGACAAAGACCGAC 958
Query 961 CTATAGTTTACAACACGATTCAAGCCTACTTGAAAGATGCTGGAGAGAGATTACACTTGG 1020
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 959 CTATAGTTTACAACACGATTCAAGCCTACTTGAAAGATGCAGGAGAGAGATTGCATTTGG 1018
Query 1021 CTTTACGAGAGTCAGAGAAAATGAATGTTCCTATTGGGTTTAAATTGGTGAGAGGTGCTT 1080
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 CTTTACGAGAATCTGAGAAAATGAATGTTCCTATTGGGTTTAAATTGGTCAGAGGTGCTT 1078
Query 1081 ATATGTCTAGTGAAGCTAAGTTAGCAGATTCCTTGGGTTACAAGTCACCGGTTCACGACA 1140
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||
Sbjct 1079 ATATGTCTAGTGAAGCTAGGTTAGCAGATTCCTTGGGTCACAAGTCACCGGTCCATGACA 1138
Query 1141 CAATTCAAAATACACATGATTGCTACAATGACTGTATGAGTTTCCTTATGGAGAAAGCCT 1200
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAATTCAAGATACACACGATTGCTACAATGACTGTATGAGTTTCCTTATGGAGAAAGCCT 1198
Query 1201 CAAATGGATCAGGCATTGCGGTCATTCTAGCTACGCATAACACAGACTCGGGTAAACTAG 1260
||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||
Sbjct 1199 CAAATGGATCAGGCATTGCGGTCATTCTAGCGACGCATAACTCCGACTCCGGTAAACTAG 1258
Query 1261 GGGCAAGAAAAGCAAGTGAGCTAGGGATCAATAAAGAAAACGGGAAGATCGAGTTTGCGC 1320
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1259 GGGCAAGGAAAGCAAGTGAGCTAGGGATCGATAAAGAAAACGGGAGGATCGAGTTTGCAC 1318
Query 1321 AGCTTTACGGGATGTCGGATGCGTTATCTTTTGGATTGAAAAGGGCCGGTTTCAATGTGA 1380
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1319 AGCTTTACGGAATGTCGGATGCATTATCTTTCGGATTGAAAAGGGCCGGTTTCAATGTGA 1378
Query 1381 GTAAGTACATGCCATACGGGCCGGTTGATACTGCAATTCCATACCTTATCCGGCGGGCAT 1440
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1379 GCAAGTACATGCCATACGGGCCGGTCGATACTGCGATTCCATACCTTATCCGGCGGGCAT 1438
Query 1441 ATGAGAATCGGGGTATGATGTCCACAGGTGCTTTAGACCGCCAACTTATGAGGAAGGAGC 1500
||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1439 ATGAGAACCGTGGTATGATGTCTACAGGTGCTCTAGACCGCCAACTTATGAGGAAGGAGC 1498
Query 1501 TTAAGAGAAGAGTTATGGCTTGGTGAA-G---AC-ACAGGA-GATA-A-A--TGTGTTTC 1550
|||||||||||||||||| ||||||| | | || ||| |||| | | |||| |||
Sbjct 1499 TTAAGAGAAGAGTTATGGGTTGGTGATTGGTGAAGAC-GGAAGATATATAAATGTGCTTC 1557
Query 1551 ATTCATGGAATA-T-----GGCAAATATAGATTTTAAAATTATATATAAATGGAGTAGCA 1604
|||||||||||| | ||||||||||||||||||||||||||| || ||||||||||
Sbjct 1558 ATTCATGGAATAATTATAAGGCAAATATAGATTTTAAAATTATATA-AA-TGGAGTAGCA 1615
Query 1605 AAATATCCACAAATGTATA-A-T--T-CATTAGTGATCAATGAAAATGCAATTTGCATat 1659
||||||||||||||||||| | | | | |||||||||||||| |||| |||||||||||
Sbjct 1616 AAATATCCACAAATGTATACAGTAATTCCTTAGTGATCAATGATAATGTAATTTGCATAT 1675
Query 1660 ttcattttttgctt 1673
||||||||||||||
Sbjct 1676 TTCATTTTTTGCTT 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5