BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38720.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494098 jgi|Araly1|494098|fgenesh2_kg.7__3531__AT5G38720.1 1548 0.0
> Ahg494098 jgi|Araly1|494098|fgenesh2_kg.7__3531__AT5G38720.1
Length=1207
Score = 1548 bits (838), Expect = 0.0
Identities = 1099/1217 (90%), Gaps = 49/1217 (4%)
Strand=Plus/Plus
Query 1 GTGGCCTGACTAATCCCTAATTTTTCCGAGAGCGTCGACGCCGACAATCGCCGACAGAGT 60
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GTGGCCTGACTAATCCC-AATTTTTCCGAGAGCGTCGACGCCGATAATCGCCGACAGAGT 59
Query 61 TTTTGCTTCTCACGCGATAGAAAGAAGATGAAGGAGACGAGAAAGCTGAAGAAGAGTAAT 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 60 TTTTGCTTCTCACGAGATAGAAAGAAGATGAAGGAGACGAGAAAGCTAAAGAAGACAAAT 119
Query 121 CTCCCT-AA--AG--A---A--G-AA-ACTGTTGGGaaaaaaaTTCAGAGGAAGAAGAAT 168
|||||| || || | | | || | ||||| |||||||||||||||||||||||
Sbjct 120 CTCCCTGAAGGAGAAACTGATGGAAAGAGAGTTGGCAAAAAAATTCAGAGGAAGAAGAAA 179
Query 169 GAGAAAGTGAGCAATGTCGAATTAAGCGAG-GATCCTCAGGCTGCACA-GCTTCAAGCTA 226
| |||||||||||||||||||||||||| || |||| | | ||| || |||||||
Sbjct 180 GTTCAAGTGAGCAATGTCGAATTAAGCGAGCAAT-CTCA--C-G-ACACGCAACAAGCTA 234
Query 227 AATCAAGTGAGAAACC---------CAA---T--A--G-A-AAGAAGATTCAGAAGGGTA 268
| |||||||||||||| || | | | | ||||||||||||||| |||
Sbjct 235 ATTCAAGTGAGAAACCGAAAAGAAAGAAGGTTGAATTGAAGAAGAAGATTCAGAAGAGTA 294
Query 269 AGGAAATAAAAAGCTCTCCAGCTGATGGTAAGCTGAGTGGGAAGATGAAGAAGAGAAAAG 328
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 295 AGGAAATAAATAGCTCTCCAGCTGATGGGAAGCTCAGTGGGAAGATGAAGAAGAGAAAAG 354
Query 329 AGAAAGTAGGCAATGTTGATATAAGCGAACCGATTCTGGAAGCTATTTCAACTGagaaag 388
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 355 AGAAAGTAGGCAATGTTGATATAAGCGAACCGAATCTGGAAGCTATTTCAACTGAGATAG 414
Query 389 taaaagaaaagaagggcaaaatgaacaagactaagaagaaaaggaaggccgaggaaaTAA 448
| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 415 TCAAAGGAAAGAAGGGCAAAATGAATAAGACTAAGAAGAAAAGGAAGGCCGAGGAAATAA 474
Query 449 CTAGATCTTCAGTCGAA---G---ATCTGAAAAGAGAAAGCAAGTTTAAGAAATCAAATA 502
||| || |||| ||| | |||||||| ||||| |||||| ||||||||||||||
Sbjct 475 TTAGCGCTACAGTTGAAGCTGATCATCTGAAAGGAGAAGGCAAGTCTAAGAAATCAAATA 534
Query 503 AGAAGAAAAAGATGGACATGACCTCTAAGAAAGAGAACAAAATTGAAGAGGAGGAAGATG 562
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 AGAAGAAAAAGATGGACATGACCTCTACGAAAGAGAACAAAATTGAAGAGGAGGAAGATG 594
Query 563 TTTATCAAATTTCTTCAGGCGATGAGGATTGCACAAGGGGAATGAAAAAGTGGGTTAGTG 622
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 595 TTTATCAAATTTCTTCAGGCGATGAGGATTGCACAAGGGGAATGAAAAAATGGGTTACTA 654
Query 623 ATTACTATGAGGGTAGACCTGGTTTAGACGAGCTCCAAAAGAGAATCGATGACTTCATGA 682
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 655 ATTACTATGAGGGTAGACCTGGTTTAGATGAGCTGCAAAAGAGAATCGATGACTTCATGA 714
Query 683 CTGCTCATGAAGAACGCCTTGAACAGGAGAAACAAGACAAAGAAGCTAAAGCTGCAGAAG 742
||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 715 CTGCTCACGATGAACGCCTTGAACAGGAGAAACAAGATAGAGAAGCTAAAGCTGCAGAAG 774
Query 743 GTGGATGGACTGTGGTCGTGCATCACAAAGGAAGGAAAAAGACAACAGAATCTGAAACCG 802
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 775 GTGGATGGACTGTGGTCGTGCATCACAAAGGAAGGAAAAAGACAACAGAAACTGAATCTG 834
Query 803 GAACAGCCGTTGGATCTTTTTCTCAGGCTGCTTTGGAGGATAAGATCGCTAAAAAGAAAC 862
||||||| |||||||||||||||||||||||||| |||||||| ||| |||| |||||||
Sbjct 835 GAACAGCGGTTGGATCTTTTTCTCAGGCTGCTTTAGAGGATAAAATCTCTAAGAAGAAAC 894
Query 863 AGAGTGAGCCTGTCGCTCATGGTTTCTACCGTTTCCAAAGGCGAGATGCACAACGCAATG 922
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 895 AGAGTGAGCCCGTCGCTCATGGTTTCTACCGTTTCCAAAGGCGAGAAGCACAACTTAATG 954
Query 923 AACTCTTGGCGCTTCAGAGTAAGTTCGAGGAAGACAAGAAGAGGATACAACAACTTCGAG 982
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 955 AAATCTTGTCGCTTCAGAGTAAGTTCGAGCAAGACAAGAAGAGGATACAACAACTTCGGG 1014
Query 983 CTGCTCGTAGGTTTAAGCCTTTCTAAGGAAGAACACATTCTGCTTGAAAAAACATGAGCT 1042
| ||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||
Sbjct 1015 CCGCTCGTAGGTTTAAGCCTTTCTAAGGAAGAATACAT-CTGCATGAAAAA-CATGAGCT 1072
Query 1043 TTGTGGGTTCAGACTCTGATTAAGCTCATGAGCAATATCATGAATGTGTT-TTATGATCA 1101
||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||||
Sbjct 1073 TTGTGGGTTCAGACTCTAATGAAGCTCATGAGCAATAGCATGAATGTGTTATTATGATCA 1132
Query 1102 AATTTTGTAATTGACCATTTCAGGCTGATAAACAAAAAGAAATATAAttttttttCCCTT 1161
| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1133 AGTTTTGTAATTGACAATTTCAGGCTGATAAACAAAAAGAAATATAATTTTTT--CCCTT 1190
Query 1162 GGAACATTAGATTGAAT 1178
||||||||| |||||||
Sbjct 1191 GGAACATTACATTGAAT 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5