BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38760.1

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494096 jgi|Araly1|494096|fgenesh2_kg.7__3529__AT5G38760.1         597    2e-170


> Ahg494096 jgi|Araly1|494096|fgenesh2_kg.7__3529__AT5G38760.1
Length=469

 Score =  597 bits (323),  Expect = 2e-170
 Identities = 366/386 (95%), Gaps = 5/386 (1%)
 Strand=Plus/Plus

Query  6    AATCTCATAATCACACTTTTATTCAAAG-AAAATACTTAACTTTCTTTTCACTAAAGCTA  64
            |||| |||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||
Sbjct  1    AATCCCATATTCACACTCTTATTCAAAGCAAAA-ACTTATCTTTCTTTTCACTAAAGCTA  59

Query  65   TTCGAAAATGTCAAGCAACTCCCAGAACATTAGCTTCCAAGCTGGCCAGGCCAAGGGCCA  124
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct  60   TTCGAAAATGTCAAGCAACTCCCAGAACATAAGCTTCCAAGCCGGCCAGGCCAAAGGCCA  119

Query  125  AACTCAGGAGAAGGCTAGCACCATGATGGACAAGGCTAGCAATGCTGCCCAATCTGCCAA  184
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  120  AACTCAGGAGAAGGCTAGCACCATGATGGACAAGGCTAGCAATGCTGCTCAATCTGCCAA  179

Query  185  GGAGTCTCTCAAAGAGACCGGCCAGCAGATTAAGGAGAAGGCACAAGGAGCTACCGAATC  244
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GGAGTCTCTCCAAGAGACCGGCCAGCAGATTAAGGAGAAGGCACAAGGAGCTACCGAATC  239

Query  245  AGTGAAGAACGCCACCGGCATGAACAAATGAATACAATAATCATATGATTCATTATGTTA  304
            ||||||||| || |||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct  240  AGTGAAGAATGCGACCGGCATCAACAAATGAAGACAATAATCATATGATTCATTATGCTA  299

Query  305  -tttt-tttt-ACGAATAAAAACAATAATTCATTTTTTGAAACCTAAAGATTAGGTTCAA  361
             |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TTTTTCTTTTCACGAATAAAAACAATAATTCATTTTTTGAAACCTAAAGATTAGGTTCAA  359

Query  362  CGGTTTGATTATTCAGACTGTTGTTT  387
            ||||||||||||||| ||||||||||
Sbjct  360  CGGTTTGATTATTCAAACTGTTGTTT  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18505460665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5