BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38770.1

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947956 jgi|Araly1|947956|scaffold_704185.1                        374    2e-103
  Ahg947954 jgi|Araly1|947954|scaffold_704183.1                        254    3e-67 


> Ahg947956 jgi|Araly1|947956|scaffold_704185.1
Length=344

 Score =  374 bits (202),  Expect = 2e-103
 Identities = 273/305 (90%), Gaps = 13/305 (4%)
 Strand=Plus/Plus

Query  1    ATGAGTCTGCATAGGGATTCAATGGTCCCGGTTAAC-TCCAGGTTAGAGAACATGGACTC  59
            ||||||||| |||| |||||||||||||||||| || ||| ||||||| ||| |  ||||
Sbjct  21   ATGAGTCTGGATAGTGATTCAATGGTCCCGGTT-ACTTCCGGGTTAGAAAACTTAAACTC  79

Query  60   TCCGATTCTCTCTAAGATTTGTGCGTGGGGCGTAATGCTGGGGCTCTTTGCGCTTTCATT  119
            ||| |||||||| ||||||||||||||||| |||||| ||||||| |||||| |||||||
Sbjct  80   TCCAATTCTCTCCAAGATTTGTGCGTGGGGAGTAATGTTGGGGCTATTTGCGATTTCATT  139

Query  120  -ATTCGCTATGGCCTATGCTTGCTATCATAAGCAA-A--CTTCGAATTCATGCATCGAAG  175
             | ||||||||||||||||||||||||| |||||| |  ||||||||||||| |||||||
Sbjct  140  GA-TCGCTATGGCCTATGCTTGCTATCACAAGCAACACGCTTCGAATTCATGTATCGAAG  198

Query  176  AG--A-A-ACA--AGGAAAGAAGCAAGTGTTGAAGCCACTAGATATGGAACCAAAGATTG  229
            ||  | | | |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  AGCAAGAGAAATCAGGAAAGAAGCAAGTGTTGAAGCCACTAGATATGGAACCAAAGATTG  258

Query  230  TTGTAATAATGGCTGGTAATGAAAACCCTACCTTCTTTGCTAAGCCAACCCAGATCAATG  289
            |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct  259  TTGTTATAATGGCTGGTAATGAAAACCCTACCTTCTTTGCCAAGCCAACCAAGATCAATG  318

Query  290  CATGA  294
            |||||
Sbjct  319  CATGA  323


> Ahg947954 jgi|Araly1|947954|scaffold_704183.1
Length=254

 Score =  254 bits (137),  Expect = 3e-67
 Identities = 203/232 (88%), Gaps = 15/232 (6%)
 Strand=Plus/Plus

Query  1    ATGAGTCTGCATAGGGATTCAATGGTCCCGGTTAACTCCAGGTTAGAGAACATGGACTCT  60
            ||||||||| |||  ||||| ||||||| |||||||||| ||||||||||| |  |||||
Sbjct  22   ATGAGTCTGGATATTGATTCGATGGTCCTGGTTAACTCCGGGTTAGAGAACTTAAACTCT  81

Query  61   CCGATTCTCTCTAAGATTTGTGCGTGGGGCGTAATGCTGGGGCTCTTTGCGCTTTCATT-  119
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  82   CCAATTCTCTCTAAGATTTGTGCGTGGGGAGTAATGCTGGGGCTCTTTGCGCTTTCATTG  141

Query  120  ATTCGCTATGGCCTATGCTTGCTAT--CATAAGCAAA-C--TTCGAATTCATGCATCGAA  174
            || ||||| ||||||||||||||||  |||||||||| |  ||||||||||||||| |||
Sbjct  142  AT-CGCTACGGCCTATGCTTGCTATATCATAAGCAAAACGCTTCGAATTCATGCATTGAA  200

Query  175  --G-A-GA-AA-CAAGGAAAGAAGCA-AGTGTTGAAGCCACTAGATATGGAA  219
              | | || || |||||||||| ||| || ||||||||||||||||||||||
Sbjct  201  AAGCAAGAGAAACAAGGAAAGAGGCATAG-GTTGAAGCCACTAGATATGGAA  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10302009030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5