BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38780.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947952 jgi|Araly1|947952|scaffold_704181.1 377 8e-104
> Ahg947952 jgi|Araly1|947952|scaffold_704181.1
Length=263
Score = 377 bits (204), Expect = 8e-104
Identities = 243/262 (93%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 916 AAGGTTTACAATTGAGATGATGGAGATTGTAAGCCATCCATTGGAGGCTGTGCAATTATC 975
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 2 AAGCTTTACAATTGAGATGATGGAGATAGTAAGCCATCCATTGGAGGCTATGCAATTATC 61
Query 976 CAACAACTTCATCACTTCCATGTATCGAGCAATTCTCTCTACAGTTATAGAAAG-ACACT 1034
|||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 62 CAACAACTTCGTCACTTCTATGTATCGAGCAATTCTCTCTACAGTTATAG-AAGAACACT 120
Query 1035 TTGGAGGTAGTGTGGTAGATGAACTATTCCGTCAATTTGCTAAGAAACTCTCCGAGCACC 1094
||||| ||||||||| ||||| ||||| |||| ||||||||||||||| || |||| |
Sbjct 121 TTGGACATAGTGTGGTCGATGAGCTATTTCGTCGATTTGCTAAGAAACTTTCTAAGCATC 180
Query 1095 CGATTGATTTTGAAAAGTGTAAGAAACAAATGGTCTATCATATCGTTCTTAAACGAAAGT 1154
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 181 CGATTGATTTTGAAAAGTGTAAGAAGCAAATGGTCTATCATATCATTCTTAAACGAAAGT 240
Query 1155 GAATATTGAGATTATCCAAAAC 1176
||||||||||||||||||||||
Sbjct 241 GAATATTGAGATTATCCAAAAC 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5