BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38790.1

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947951 jgi|Araly1|947951|scaffold_704180.1                        601    1e-171


> Ahg947951 jgi|Araly1|947951|scaffold_704180.1
Length=433

 Score =  601 bits (325),  Expect = 1e-171
 Identities = 375/398 (94%), Gaps = 7/398 (2%)
 Strand=Plus/Plus

Query  1    ATGGATAAAGAAGAATGCAGCAGTAGTGAATCCGGTTGGACAACTTATCTTTCGTCGCCG  60
            |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| 
Sbjct  21   ATGGATAAGGAAGAATGCAGCAGTAGTGAATCCGGTTGGACGACTTATATTTCGTCGCCA  80

Query  61   ATTAAAGTAGATGAAGATGAGGTCGTGGATGAGGACTACTACTATGAAGGGTATAACATT  120
            ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct  81   ATTAAAGTAGATGAAGATGAGGTCGTGGATGAGG---ACTACTATGAAGGGTATAACATT  137

Query  121  TATAATTATTCGAGTAAAGTCGAACACGAAGAAGAGAGGAACAAAGATAGCGATGATTCA  180
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  138  TATAATTATTCGAGTAAAGTCGAACACGAAGAAGAGAGGAACAAAGATAGTGATGATTCA  197

Query  181  ATGGCCTCAGATGCTTCGTCTGGGCCAAATTATCAGCGGT-TCCACCAAAAGAACAAGGC  239
            ||||| || ||||||||||| ||||||||||||||||| | || ||||||||||||||||
Sbjct  198  ATGGCTTCGGATGCTTCGTCGGGGCCAAATTATCAGCGCTATC-ACCAAAAGAACAAGGC  256

Query  240  GTTGGATTTGAAGAACGGG-AAAAATGAAGGTAATTCTAAGAGTAAAAATGATGATGATC  298
            ||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct  257  GTTGGATTTGAAGAA-GGGTAAAAATGAAGGTAATACTAAGAGTAAAAATGTTGATGATC  315

Query  299  ATCATAATCATTATCATGACGGTaaaaaaaCTAGTAACTCATACAGGaaaaaagacaaga  358
            ||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct  316  ATCATAATCATTACCATGACGGTAAGAATACTAGTAACTCATACAGGAAAAAAGAGAAGA  375

Query  359  aaaagagagaaaaTAAGAGTACCTATAGGATGAAGTGA  396
            |||||||||||||||||||||||||||| |||||||||
Sbjct  376  AAAAGAGAGAAAATAAGAGTACCTATAGAATGAAGTGA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14193879108


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5