BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38800.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947950 jgi|Araly1|947950|scaffold_704179.1 669 0.0
> Ahg947950 jgi|Araly1|947950|scaffold_704179.1
Length=571
Score = 669 bits (362), Expect = 0.0
Identities = 508/574 (89%), Gaps = 28/574 (5%)
Strand=Plus/Plus
Query 1 ATGCAACCATCCACCAACATTTTTAGCCTCCATGGTTGTCCACCTTCGTACCTTTCCCAT 60
||||||||| | ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 21 ATGCAACCAGCAACCAACATTTTCAGCCTCCATGGTTGCCCACCTTCGTACCTCTCCCAT 80
Query 61 ATT-CCTACATCCTCACCATTTTGCGGACAAAACCCTAATCCATTCTTCAGCTTCGAAAC 119
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 -TTCCCTACATCCACGCCATTTTGCGGACAAAACCCTAATCCATTCTTCAGCTTCGAAAG 139
Query 120 TGGCGTGAACACTTCACAGTTCATGAGTTTGATCAGCAGCAACAACTCGACCTCAGATGA 179
||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 140 TGGTGTGTATACTCCACAGTTCATGAGTTTG---AGCAGCAACAACTCGACCTCAGAAGA 196
Query 180 AGCAGAAGAGAATCATA-AGGAGATAATAAATGAGAGGAAGCAAAAGAGGAAGATATCTA 238
|| ||||||||||| || | |||||| | |||||| |||||||||||||||||||||| |
Sbjct 197 AGGAGAAGAGAATCTTACA-GAGATATTCAATGAGCGGAAGCAAAAGAGGAAGATATCGA 255
Query 239 ACAGAGAATCGGCAAGAAGATCGCGTATGAGGAAGCAGAGACAAGTGGATGAGCTTTGGT 298
||||||||||||| || |||||||||||||||||||||||||| | |||||||||||||
Sbjct 256 ACAGAGAATCGGCCAGGAGATCGCGTATGAGGAAGCAGAGACAGGCAGATGAGCTTTGGT 315
Query 299 CACAGGTGATGTGGCTTAGGGATGAGAATCATCAGCTGCTTCGTAAGCTTAACTGCGTTT 358
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 316 CACAGGTGATGTGGCTTAGGAATGAGAATCATCAGTTGCTTCGTAAGCTTAACTGCGTTT 375
Query 359 TAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGTTCAGCTCAAAGAGGAAACCACTGAGC 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 376 TAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGCTCAGCTCAAAGAGGAAACCTCTGAGC 435
Query 419 TTAAGCAAATGATTAGTGATATGCAGCTTCAGAATCAGAGTCCTTTCTCTTGCATCAGAG 478
||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 436 TTAAGCACCTGATTAGTGATATGCAGCTTCAGAATCAAAGTCCTTTCTCTGGTATCAGAG 495
Query 479 ACGACGACGACGTTGTATAGATGAtttttatttttatttttttGGGGCTCTAGTATGTAT 538
| ||| | ||||||||||||| |||| | | || |||||||||||||
Sbjct 496 ATGAC-A-----TTGTATAGATGATGTTTA-----AGT-----GG--CTCTAGTATGTAT 537
Query 539 CAACAAATGTATATCCAGAGAT---CTGTCTCAG 569
| | |||||||||||||||||| |||||||||
Sbjct 538 CTATAAATGTATATCCAGAGATGATCTGTCTCAG 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5