BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38820.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356106 jgi|Araly1|356106|fgenesh1_pg.C_scaffold_7003279 2189 0.0
Ahg896967 jgi|Araly1|896967|Al_scaffold_0005_933 961 0.0
> Ahg356106 jgi|Araly1|356106|fgenesh1_pg.C_scaffold_7003279
Length=1371
Score = 2189 bits (1185), Expect = 0.0
Identities = 1309/1371 (95%), Gaps = 0/1371 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATCTAGATGAAATCCGTACCGATATTGTCGAATCTACTGCTCCGTTGTTGCAA 60
||||||||| |||| |||||||||||||||||||| ||| || |||||| |||||||||
Sbjct 1 ATGGAGAATTTAGACGAAATCCGTACCGATATTGTAGAAGGTAGTGCTCCATTGTTGCAA 60
Query 61 GAATCATCATCAGAGAGCAACGGAGGAGGAGAATTCAACGGAGCTTCGTTTAGTGGTGCG 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GAATCATCATCAGAGAGCGACGGAGGAGGAGAATTCAACGGAGCTTCGTTTAGTGGAGCG 120
Query 121 GTTTTCAATCTCGCTACAACGATCATCGGAGCTGGTATCATGGCATTGCCTGCGACGATG 180
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 121 GTTTTCAATCTCGCTACAACGATCATCGGTGCTGGTATAATGGCATTGCCTGCGACGATG 180
Query 181 AAGATCCTCGGTCTTATTCCCGGAATCACGATCATCGTTCTCATGGCTTTCTTAACCGAT 240
||||||||||||||||| ||||||||| |||| || ||||| ||||||||||| ||||||
Sbjct 181 AAGATCCTCGGTCTTATCCCCGGAATCGCGATGATTGTTCTTATGGCTTTCTTGACCGAT 240
Query 241 GCTTCGATTGAGTTCTTGCTTAGGTTTAGTAACATTGGGAATCAAAGATCTTACGGTGGT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 GCTTCGATTGAGTTCTTGCTTAGGTTTAGTAACATAGGGAATCAAAGATCTTATGGTGGT 300
Query 301 GTTATGGATGATTCTTTTGGTAAATGTGGAAGGATTATGTTGCAAGTTTCGATTCTCGTT 360
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct 301 GTTATGGATGATTCTTTTGGTAAATGTGGAAGGATTTTGTTACAAGTTTCGATTCTTGTT 360
Query 361 AGCAACATTGGTGTTTTGATCGTTTATATGATCATCATTGGTGATGTTTTGGCTGGTAAG 420
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AGCAACATCGGTGTTTTGATCGTTTATATGATCATTATTGGTGATGTTTTGGCTGGTAAG 420
Query 421 AATGAATATGGAATCCATCATGCTGGTATGCTTGAAGGATGGTTTGGGATTAGTTGGTGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 AATGAATATGGAATCCATCATGCTGGTATGCTTGAAGGATGGTTTGGGATTAATTGGTGG 480
Query 481 AACAGAAGAACTTTTGTTCTTCTTGTTACTACTCTCACTGTCTTTGCTCCATTGACTTGC 540
|| |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 481 AATAGAAGAACTTTTGTTCTTCTCGTTACTACTCTCATTGTGTTTGCTCCATTGACTTGC 540
Query 541 TTCAAACGAATTGATTCTTTGAGATTCACATCTGCTATATCAGTTGCTTTAGCGGTTGTT 600
||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 541 TTCAAGCGGATTGATTCTTTGAGATTCACATCTGCTGTATCGGTTGCTTTAGCGGTTGTT 600
Query 601 TTTCTTGTCATCACTGCTGGAATTACTATCATTAAGCTGTTTACTGATGGTTTGATGATG 660
||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 601 TTTCTTGTCATTACTGCGGGAATTACTATCGTAAAGCTGTTTACTGATGGTTTGATGATG 660
Query 661 CCGAGACTTCTACCTAATGTCACTGACTTGTCGTCGTTTTGGAAACTCTTCACGGTTGTT 720
|| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 CCAAGACTTTTACCTAATGTCACTGACTTGTCGTCGGTTTGGAAACTCTTCACGGTTGTT 720
Query 721 CCTGTGCTTGTCAATGCATACATTTGCCATTACAATGTTCATAGTATACAGAACGAGCTT 780
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 721 CCTGTGCTTGTCAATGCATACATTTGTCATTACAATGTTCACAGTATACAGAACGAGCTT 780
Query 781 GAAGACCCTTCTCGGATAAAACCTGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTT 840
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAGATCCTTCTCGGATAAAACCAGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTT 840
Query 841 TACGTTATGACGAGTTTATTCGGATACCTCTTATTCGGTGATGGTACTCTTGATGATGTT 900
|||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 841 TACGTTATGACGAGCTTATTCGGATACCTTTTATTCGGTGATGCTACTCTCGATGATGTT 900
Query 901 CTTGCAAACTTTGACACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTGCAAACTTTGACACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTG 960
Query 961 AGATTTAGCTACGCAGCTCATCTCATGCTTGTGTTCCCTGTTGTCTTCTATCCTCTGCGG 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGATTTAGCTATGCAGCTCATCTCATGCTTGTGTTCCCTGTTGTCTTCTATCCTCTGCGG 1020
Query 1021 ATTAACATCGACGGTCTCATCTTTCCTACGGCTCCACCACTTACTTCCTCTGAGTCTGAT 1080
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1021 ATTAACATTGACGGTCTCATTTTTCCTACGGCTCCACCACTTACTTCCTCTGGGTCTGAT 1080
Query 1081 CTGAGGTTTGGCTCTATTACTGCTGGTCTCATTGCTGTAATCTTCTTGGGAGCAAACTTC 1140
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 CTGAGGTTTGGCTCTATCACTGCTGGTCTCATCGCTGTAATCTTCTTGGGAGCAAACTTC 1140
Query 1141 ATACCAAGCATTTGGGATGCTTTCCAATTTACTGGAGCAACTGCTGCTGTCTGCATCGGT 1200
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1141 ATTCCAAGCATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCTGCTGTCTGCATCGGT 1200
Query 1201 TTCATATTCCCTGCTGCTGTTATCTTAAAGGATCGTCATAACCAAGCAACCAAGCGAGAC 1260
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1201 TTCATATTCCCTGCTGCTGTTATCTTGAAGGATCGTCATAACCAAGCAACAAAGCGGGAC 1260
Query 1261 AAGACTATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAATGCAATCGCCATTTAC 1320
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 AAGACTATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAACGCAATCGCCATTTAC 1320
Query 1321 AGTGACGCCTACGCCTTATTCAAGAAGCACACATACGTATATCCAATATGA 1371
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1321 AGTGACGCCTACGCCTTATTCAAGAAGAACACATACGTATATCCAATATGA 1371
> Ahg896967 jgi|Araly1|896967|Al_scaffold_0005_933
Length=1377
Score = 961 bits (520), Expect = 0.0
Identities = 1037/1281 (81%), Gaps = 58/1281 (5%)
Strand=Plus/Plus
Query 91 GAATTCAACGGAGCTTCGTTTAGTGGTGCGGTTTTCAATCTCGCTACAACGATCATCGGA 150
|||||||| |||||||| |||||||| |||||||| ||||||||||| || || || ||
Sbjct 109 GAATTCAATGGAGCTTCTTTTAGTGGCGCGGTTTTTAATCTCGCTACGACTATAATTGGT 168
Query 151 GCTGGTATCATGGCATTGCCTGCGACGATGAAGATCCTCGGTCTTATTCCCGGAATCACG 210
|||||||||||||| ||||| || ||||||||||| || || ||| | ||||||||
Sbjct 169 GCTGGTATCATGGCTTTGCCGGCTACGATGAAGATTCTTGGACTTGGACTTGGAATCACT 228
Query 211 ATCATCGTTCTCATGGCTTTCTTAACCGATGCTTCGATTGAGTTCTTGCTTAGGTTTAGT 270
|| || ||| | ||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 229 ATGATTGTTGTTATGGCTTTCTTGACTGATGCATCGATTGAGTTCTTGCTTAGGTTTAGT 288
Query 271 AACAT-TGGGAATCAAA-GATCTTACGGTGGTGTTA-TGGATGATTCTTTTGGTAAATGT 327
|| | |||||| || |||||||||||||| ||| ||| || |||||||||||| |
Sbjct 289 AA-AGCTGGGAAG-AATCGATCTTACGGTGGT-TTAATGGGTGGTTCTTTTGGTAA-TCC 344
Query 328 -GGAAGGATTATG-TTGCAAGTTTCGATTCTCGTTAGCAACATTGGTGTTTTGATCGTTT 385
||||||||| || || ||||| || || |||||| |||||| ||||||||||| ||||
Sbjct 345 CGGAAGGATTTTGCTT-CAAGTCGCGGTTTTCGTTAACAACATCGGTGTTTTGATTGTTT 403
Query 386 ATATGATCATCATTGGTGATGTTTTGGCTGGTAAGAATGAATATGGAATCCATCATG-CT 444
| ||||||||||| |||||||| |||||||| |||| ||| |||||||||||||| |
Sbjct 404 ACATGATCATCATAGGTGATGTGTTGGCTGGAAAGACGGAAGATGGAATCCATCATTTC- 462
Query 445 GGTATGCTTGAAGGATGGTTTGGG-ATTAGTTGGTGGAACAGAAGAACTTTTGTTCTTCT 503
||| | |||||||||||||| || | | |||||||||| ||||| || | |||||||
Sbjct 463 GGTGTTCTTGAAGGATGGTTCGGTCACCA-TTGGTGGAACGGAAGAGCTGCTATTCTTCT 521
Query 504 TGTTACTACTCTCACTGTCTTTGCTCCATT-GACTTGCTTCAAACGAATTGATTCTTTGA 562
| |||| ||||| ||| ||||||||||| | |||||||||| ||||||||||||||||
Sbjct 522 TATTACAACTCTTGGTGTGTTTGCTCCATTAG-CTTGCTTCAAGCGAATTGATTCTTTGA 580
Query 563 GATTCACATCTGC-TATATCAGTTGCTTTAGCGGTTGTTTTTCTTGTCATCACTGCTGGA 621
||| |||||||| | |||| || ||| | |||||||| ||||| | || || || |||
Sbjct 581 AATTTACATCTGCCT-TATCCGTGGCTCTGGCGGTTGTGTTTCTCATTATTACAGCGGGA 639
Query 622 ATTACTATCATTAAGCTGTTTACTGATGGTTTGATGATGCCGAGACTT-CTACCTA-ATG 679
||| | || || ||| || | | || ||| || |||||| ||| || ||||| | |||
Sbjct 640 ATTTCGATTATGAAGTTGATCAGTGGCGGTGTGGCGATGCCAAGA-TTGCTACC-AGATG 697
Query 680 TCACTGACTTGTCGTCGTTT-TGGAAACTCTTCACGGTTGTTCCTGTGCTTGTCA-ATGC 737
| || ||||| | || ||| ||||| |||||||| ||||| || || ||||||| | ||
Sbjct 698 TTACCGACTTAACATC-TTTCTGGAATCTCTTCACAGTTGTACCCGTTCTTGTCACA-GC 755
Query 738 ATACATTTGCCATTACAATGTTCATAGTATACAGAACGAGCTTGAAGAC-CCTTCTCGGA 796
|| ||||||||||||||||||||| || |||||||||||||| |||||| ||| ||| ||
Sbjct 756 ATTCATTTGCCATTACAATGTTCACAGCATACAGAACGAGCTCGAAGACGCCT-CTCAGA 814
Query 797 TAAAACCTGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTTTACGTTATGACGAGT- 855
||| ||||||||| |||||||||||| | | || || ||||||||| | ||||| ||
Sbjct 815 TAAGACCTGTTGTCCGATCAGCACTTATGCTCTGCTCATCTGTTTACATAATGACAAGCA 874
Query 856 TTATTCGGATACCTCTTATTCGGTGATGGTACTCTTGATGATGTTCTTGCAAACTTTGAC 915
|| ||||| | |||||| || ||||||| ||||||||||||||| |||||||||||||||
Sbjct 875 TT-TTCGGGTTCCTCTTGTTTGGTGATGATACTCTTGATGATGTCCTTGCAAACTTTGAC 933
Query 916 ACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTGAGATTTAGCTACGCA 975
|| || |||||||||||||||||||| | ||||||||||| || || |||||||||||
Sbjct 934 ACCGACCTTGGAATCCCTTTTGGTTCTATCCTTAATGATGCGGTTCGAGTTAGCTACGCA 993
Query 976 GCT-CATCTCATGCTTGTGTTCCCTGTTGTCTTCTATCCTCTGCGGATTAACATCGACGG 1034
|| ||||| ||||| |||||||| |||| ||||| ||||||||||||||||| |||||
Sbjct 994 -CTTCATCTGATGCTCGTGTTCCCAATTGTTTTCTACCCTCTGCGGATTAACATTGACGG 1052
Query 1035 TCTCATCTTTCCTACGGCTCC-ACCACTTA-CTTCCTCTGAGTCTGATCTGAGGTTTGGC 1092
||| | || ||| | || || | || ||| || |||| | | ||| | |||| | |
Sbjct 1053 GCTCTTGTTCCCTTCCGC-CCGATCA-TTATCTACCTCAAA-TGTGAGGTTCGGTT-GCC 1108
Query 1093 TCTATTACTGCTGGTCTCAT-TGCTGTAATCTTCTTGGGAGCAAACTTCATACCAAGCAT 1151
|| | |||| |||||||| | ||||| |||||||||| ||||||||||| || |||||
Sbjct 1109 TC-A---CTGCCGGTCTCATCT-CTGTAGTCTTCTTGGGTGCAAACTTCATCCCGAGCAT 1163
Query 1152 TTGGGATGCTTTCCAATTTACTGGAGCAACTGCTGCTGTCTG-CATCGGTTTCATATTCC 1210
|||||||||||||||||| |||||||||||||| ||||| || | |||| ||||| ||||
Sbjct 1164 TTGGGATGCTTTCCAATTCACTGGAGCAACTGCCGCTGTTTGTC-TCGGCTTCATCTTCC 1222
Query 1211 CTGC-TGCTGTTAT-CTTAAAGGATCGTCATAACCAAGCAACCAAGC-GAGACA-AGAC- 1265
| || | || |||| || ||||||||| ||| | ||||||| || | | |||| | ||
Sbjct 1223 CCGCGT-CTATTATACT-AAAGGATCGGCATGGCAAAGCAACAAA-CAGGGACACA-ACC 1278
Query 1266 TATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAATGCAATCGCCATTTACAGTGA 1325
| ||||||||| ||||||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct 1279 T-TAGCCATTTTCATGATCGTTCTTGCGGTATTGTCCAATGCAATCGCCATTTACAGCGA 1337
Query 1326 CGCCTACGC-CTTATTCAAGA 1345
||||| || || ||||||||
Sbjct 1338 TGCCTATGCACT-ATTCAAGA 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5