BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38840.1
Length=2472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494091 jgi|Araly1|494091|fgenesh2_kg.7__3524__AT5G38840.1 3428 0.0
Ahg932683 jgi|Araly1|932683|scaffold_400671.1 154 3e-36
> Ahg494091 jgi|Araly1|494091|fgenesh2_kg.7__3524__AT5G38840.1
Length=2358
Score = 3428 bits (1856), Expect = 0.0
Identities = 2212/2377 (93%), Gaps = 52/2377 (2%)
Strand=Plus/Plus
Query 49 ATGGATCCTCCTCCACCGCGAAACCCTAGCCATGATAT-CGAGCCTCCTGAACCAAACAG 107
||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||
Sbjct 1 ATGGATCCTCCTCCACCACGAAACCCTAGCCATGAT-TCCGAGCCTCCTGAACCTAACAC 59
Query 108 TACATCAATTTCCCAAA--G-CG-AT--GAAAC-CT--C--AA-------CGATGAATCC 149
|||||||||||| |||| | || || ||| || | || ||||||||||
Sbjct 60 TACATCAATTTCTCAAACCGACGAATCCTCAACGCTAGCAGAAGTCTCGTCGATGAATCC 119
Query 150 TCCACCTCCCAGAAACCCTAACCCACCTGATCTGAAGACAACGGAAGTAGTTGTAGAGCC 209
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 120 TCCACCTCCCAGAAACCCTAACCTACCTGATCTGAAGACAACGGAAGTA---GTAGAGCC 176
Query 210 CGAGCCAATAGAGGAATCCAAGGACGA-T--TCCGTCACTGTAGACGCGGATAAACCAGT 266
||||||||| || |||||||||||||| | |||||| ||||||||||| ||||||||||
Sbjct 177 CGAGCCAATGGACGAATCCAAGGACGATTCCTCCGTCGCTGTAGACGCGAATAAACCAGT 236
Query 267 TCGTCCCCGAACCGTGAAGCAGAATCCTGTCCCCTACACTATTCCAGAGTGGAGTGGCCC 326
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 TCGTACCCGAACCGTGAAGCAGAATCCAGTCCCCTACACTATTCCAGAGTGGAGTGGCCC 296
Query 327 TCCGTGTCACCAATTTCAGCTTGAAGTTCTCAAAGAAGGCGCCATTGTTGAGAAATTAGA 386
||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 297 TCCGTCTCACCAATTTCAGCTTGAAGTTCTTAAAGAAGGCGCCATTGTTGACACATTAGA 356
Query 387 CGTCTATAAGAAAGGAGCTTACTTGTTTGGACGTGATGGTATCTGTGATTTTGCTCTTGA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CGTCTATAAGAAAGGAGCTTACTTGTTTGGACGTGATGGTATCTGTGATTTTGCTCTTGA 416
Query 447 GCACCCTTCGATTTCTCGGTTTCATGCAGTTATTCAGTACAAGAGGAGTGGAGCTGCGTA 506
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 GCATCCTTCGATTTCTCGGTTTCATGCAGTTATTCAGTACAAGAGAAGTGGAGCTGCGTA 476
Query 507 TATATTTGATCTTGGAAGCACGCATGGAACAACTGTTAACAAGAATAAGGTGGATAAAAA 566
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 477 TATATTTGATCTTGGAAGTACGCATGGAACGACTGTTAATAAGAATAAGGTGGATAAAAA 536
Query 567 GGTTTTTGTGGATTTGAATGTCGGTGATGTTATTCGCTTTGGCGGTTCGACTAGATTATA 626
|||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct 537 GGTTTTTGTGGATTTGCATGTTGGTGATGTTATTCGCTTTGGCGGTTCGACTCGATTATA 596
Query 627 CATTTTCCAAGGACCCTCGGACTTAATGCCACCAGAGAAAGACTTACAATTAATTAGAGA 686
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 CATTTTTCAAGGACCCTCGGACTTAATGCCACCAGAGAAAGACTTACAATTAATCAGAGA 656
Query 687 AGCAAAGATGAGAATGGAAATGTCAGAACGAGAAGCTTCACTGCGACGAGCAAGGCAGCA 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 AGCAAAGATGAGAATGGAAATGTCAGAACGAGAAGCTTCACTGCGACGAGCAAGACAGCA 716
Query 747 AGCATCCATGGCTGATGGTGTTTCATGGGGCATGGGGGAAGATGCTATTGAAGAAGAAGA 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCATCCATGGCTGATGGTGTTTCATGGGGCATGGGGGAAGATGCTATTGAAGAAGAAGA 776
Query 807 GGATGATGTTGAGGAAATTACTTGGCAAACATATAGTGGAGAACTCACTCCAAAGCAAGA 866
||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 777 GGATGATACTGAGGAAATCACGTGGCAAACATATACCGGAGAACTCACTCCAAAGCAAGA 836
Query 867 AAAAACTAAGGAGAAAGTACTGAAACGGTTGGAGAAGATCGGCCATATGAAGAAGGAAGT 926
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 AAAAACTAAGGAAAAAGTACTGAAACGGTTGGAGAAGATTGGCCATATGAAGAAGGAAGT 896
Query 927 AGCAGCTATTCGAGCCAAAGACATTTCTCAGGGTGGATTGACACAAGGACAACAAACGCA 986
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 AGCAGCTATTCGAGCCAAAGACATTTCGCAGGGTGGATTGACACAAGGACAACAAACGCA 956
Query 987 GATCGCTAGGAATGAGCAGAGAACGGCTGAGCTTCTGGAAGAACTTGAGAACTTGGAAGA 1046
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 957 GATTGCTAGAAATGAGCAGAGAACAGCTGAGCTTCTGGAAGAACTTGAGAACTTGGAAGA 1016
Query 1047 GACACTGAATGACAGCATCCGGGAAAGTTTGGGTGCCAAAACAGGGAGAAAACCCACCCA 1106
||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||
Sbjct 1017 GACACTGAATGACAGCATCCGAGAGAGTTTGGGTGCCAAAACAGGGAGAAAA--C-CCCA 1073
Query 1107 CGGAAAGAAGAAAGGAATTGTAGAAGATGAGGAAGACTTGTCGAGTGATGAAGATGACTT 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CGGAAAGAAGAAAGGAATTGTAGAAGATGAGGAAGACTTGTCGAGTGATGAAGATGACTT 1133
Query 1167 CTATGACCGGACCCAGAAGAAACCATCAACAAAGAAAGGCAGCGAAAACCAAACTGTAGA 1226
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1134 CTATGACCGGACCAAGAAGAAACCATCAACACAGAAAGGCAGCGAAAACCAAACTGTAGA 1193
Query 1227 AACTGTTGATTCACTTGTAGATAAGAGAGACAATGTCTTGAAAGAAATAGAAGCAAAGAA 1286
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AACTGTTGATTCACTTCTAGATAAGAGAGACAATGTCTTGAAAGAAATAGAAGCAAAGAA 1253
Query 1287 TGAACAGCTTTTAACAGAGAAGAGTAAGATGGAGACAGAGAATGTCACAGAGGTTACATC 1346
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1254 TGAACAGCTTTTAACAGAGAAGAATAAGATGGAGATAGAGAATGTCACAGAGGTTGCATC 1313
Query 1347 GGGAGACTCCCTTGATGCCCTTGATGCATACATGACCGGGCTTTCTACAACACTTGTGCA 1406
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AGCAGACTCCCTTGATGCCCTTGATGCATACATGACCGGGCTTTCTACAACACTTGTGCA 1373
Query 1407 AGATAAAACCGCCCAGATCCAGCAAGAGTTGTCTACTCTACAGTCAGAATTAAGTAGGAT 1466
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1374 AGATAAAACCGCCCAGATCCAGCAAGAGTTGTCTACTCTTCAGTCGGAATTAAGTAGGAT 1433
Query 1467 CTTATACCTTCTAAAGATTGCTGACCCAACCGGAGAAGAGGTTAAGAAAAGGGAGTTGAA 1526
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1434 CTTGTACCTTCTAAAGATTGCTGACCCAACTGGAGAAGAGGTTAAGAAAAGAGAGTTGAA 1493
Query 1527 GTCACAAGAATTAAAAATAAAGAAATCTGAAACACCTTCC-GTAGAAAAGAAGATCAATA 1585
|||||||||| ||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 1494 GTCACAAGAACCAAAAATAAAGAAATCTGAAACACCT-CCTGTAGAAAAGAAGATCAGTA 1552
Query 1586 TACCTTTAAAACAAGCTGATCCTAATGAGCATAAGGAGAAAGAAGTGGCCAAAGATTTAG 1645
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TACCTTTAAAACAAGCTGATTCTAATGAGCATAAGGAGAAAGAAGTGGCCAAAGATTTAG 1612
Query 1646 TGGACTCAGAAAATAAGCCTGAAGTAGAAAATAAAGCAAGTGAAACAGCTGAAGAAAAGA 1705
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1613 TGGACTCAGACAATAAGCCTGAAGTAGAAAAGAAAGCAAGTGAAACAGCTGAAGAGAAGA 1672
Query 1706 AGACCACTGTGTATGTTCCATCAAAACCCCAATGGCTCGGTTCCGCTGCAAATAAAGCCA 1765
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGACCCCTGTGTATGTTCCATTGAAACCCCAATGGCTCGGTTCCGCTGCAAATAAAGCCA 1732
Query 1766 TAATTGAAGaaaaaaaCCCTGAGATAGTAGCTGCTACTACTGATAGCACAGAGGATGCTG 1825
|| |||||| ||||| |||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 1733 CAACTGAAGAGAAAAAGCCTGAGATTGTAGCTGCTGCTACCGATAGCACAGAGGATGCTG 1792
Query 1826 ATGGGTTTGTCGACTATAAAAATAGGAAGAATATTGCTCTAACAGCCACCGCTGGAGTTG 1885
|||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||| |||
Sbjct 1793 ATGGGTTTGTTGACTATAAAGATAGGAAGAATATTGCTCTAACAACCACAACTGGAATTG 1852
Query 1886 AAGTTGTAACAGGGTTGATAATAAGAAAACGTAAGCAAGAAGACAAGAGCGAAGAAGATG 1945
||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1853 AAGGTGCAACAGGATTGATAATAAGAAAACGTAAGCAAGAAGACAAGAGTGAAGAAGAAG 1912
Query 1946 ATGAT---TCAAAGGAAAAGCAAGCAGAGGTCATGGCACAGGATGCAGTTGCTCTCTTAT 2002
||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1913 ATGATAAGTCGAAGGAAAAGCAAGCAGAGGTCATGGCACAAGACGCAGTTGCTCTCTTAT 1972
Query 2003 TGAAACATTCTGTAGGCCATCATGTAAACGAAGAAGACAAAGAACTCAGTAAACAGgaag 2062
|||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||
Sbjct 1973 TGAAACATTCTGTAGGACATCATGTAAACGAAGAAGA-A--GAACTCAGTAAAAAGGAAG 2029
Query 2063 aaaataatcaaggaagtggccaaagtaaaacgaagaagaagaagaagacggctaaaaaag 2122
||| ||| ||||||||||| || |||| || | ||||||||||||||||||||||||||
Sbjct 2030 AAAGTAAGCAAGGAAGTGGTCATAGTAGAA--A-GAAGAAGAAGAAGACGGCTAAAAAAG 2086
Query 2123 TAGTTGGTCCTGATAAACCAGAATATCTGGATGAAACCATAGATTATGATTCTTGGGTAC 2182
|||||||||||||||||||||||||||||||||||| || ||| |||||||| |||||||
Sbjct 2087 TAGTTGGTCCTGATAAACCAGAATATCTGGATGAAAGCACAGAGTATGATTCATGGGTAC 2146
Query 2183 CTCCTGCAGGACAATCTGGTGATGGGCGAACATCTCTAAATGACCGTCTGGGATATTGAT 2242
||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 2147 CTCCTGCAGGACAATCTGGTGATGGACGAACATCTCTGAATGACCGTTTGGGTTATTGAT 2206
Query 2243 CAGCGATAGAGTTTCCAGAGCAAACTATAGGATTGAGGAGAG---G---TAGAAGTGGCT 2296
| ||||| |||| ||| ||||||| || ||||||||||||| | |||||||||||
Sbjct 2207 CGGCGATCGAGTCCCCATAGCAAACCATGGGATTGAGGAGAGCTAGAAGTAGAAGTGGCT 2266
Query 2297 TAAATATCTGTCAAGTTTTGCATCACTCAGTCTGGTGATTTCTT-GGTCACACAGTACTT 2355
|||| |||||||||||||||||||| || |||||||||||||| ||||||| ||||||
Sbjct 2267 TAAACATCTGTCAAGTTTTGCATCATTCT-TCTGGTGATTTCTTTGGTCACA--GTACTT 2323
Query 2356 TGTAAATTCATACTCTAAACCCTGAGCTTTCCTGATT 2392
|||||||||| |||||||||| |||||||||||||
Sbjct 2324 TGTAAATTCA--CTCTAAACCCAAAGCTTTCCTGATT 2358
> Ahg932683 jgi|Araly1|932683|scaffold_400671.1
Length=212
Score = 154 bits (83), Expect = 3e-36
Identities = 168/203 (83%), Gaps = 29/203 (14%)
Strand=Plus/Plus
Query 41 CATCGGCGATGGATCCTCCTCCACCGCGAAACCCTAGCCATGAT-A-T-CGAGCCTCCTG 97
|||||||||||||||||||||||||||||||||||||||||||| | | |||| | |||
Sbjct 14 CATCGGCGATGGATCCTCCTCCACCGCGAAACCCTAGCCATGATAATTCCGAG--T-CTG 70
Query 98 AACCAAACAGTACATCA--ATTTCC-CAAAGCGATG-A-----AAC-CT---C--A---- 138
||||||||| ||||||| | |||| |||||||| | | ||| || | |
Sbjct 71 AACCAAACACTACATCATCAATTCCTCAAAGCGACGAATCCTCAACGCTAACCGAAGTCT 130
Query 139 -A-CGATGAATCCTCCACCTCCCAGAAACCCTAACCCACCTGATCTGAAGACAACGGAAG 196
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 131 CATCGATGAATCCTCCACCTCCCAGAAACCCTAACCTACCTGATCTGAAGACAACGGAA- 189
Query 197 TA-GTTGTAGAGCCCGAGCCAAT 218
|| || ||||||||||| |||||
Sbjct 190 TAAGTAGTAGAGCCCGAACCAAT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93168739270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5