BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38860.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947945 jgi|Araly1|947945|scaffold_704174.1 1096 0.0
Ahg476029 jgi|Araly1|476029|fgenesh2_kg.2__1159__AT1G69010.1 97.1 3e-19
> Ahg947945 jgi|Araly1|947945|scaffold_704174.1
Length=928
Score = 1096 bits (593), Expect = 0.0
Identities = 826/935 (88%), Gaps = 29/935 (3%)
Strand=Plus/Plus
Query 119 CATCGAACTATGAACTCTCATGATATCGATGATCAGTTAGAAGCAGATGTATACAGTAAC 178
|||||||| |||||||||| ||| ||||||| || ||||||||||| ||||||||||||
Sbjct 12 CATCGAACAATGAACTCTCCTGACGTCGATGAGCAATTAGAAGCAGAAGTATACAGTAAC 71
Query 179 TTGCCTTCTCGAAATGATTCTTCAACAGGGAGGAGAAATCGAAACTCGTGTAGATCGAAA 238
|| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 72 TTACCTTCCCGAAATGATTCATCAACAGGGAGGAGAAATCGAAGCTCGTGTAGATCGAAA 131
Query 239 CACTCAGAGACTGAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGTTTAATG 298
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CACTCAGAAACAGAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGTTTAATG 191
Query 299 GATATTATACCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTCTTGTTGGAG 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 192 GATATAATACCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTCTTATTGGAG 251
Query 359 GTTATAGAGTATATTCACTTTCTTCAAGAAAAAGTTCACATGTATGAAG-AT-TC-TCAC 415
||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||||
Sbjct 252 GTTATAGAGTATATTCACTTTCTACAAGAAAAAGTTCACATGTATGAAGGATCTGATCAC 311
Query 416 CAAATGTGGTATCAATCCCCAACCAAATTGATTCCTTGGAGAAATAGTCATGGGTCTGTT 475
||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||
Sbjct 312 CAAATGTGGTATCAAGGGCCAACCAAATTGATTCCATGGAGAAATAATTATGGGTCTGTT 371
Query 476 GCGGAGGAAAATGACCATCCTCAAATCGTTAAAAGCTTTTCAAGTAATGATAAAGTTGCT 535
| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 372 GTGGAGGTCAATGACCAACCTCAAATCGTTAAGAGCTTTTCAAGTAATGATAACGTTGCT 431
Query 536 GCTTCTTCGGGTTTTCTCTTGGATACGTACAATT-CAGTAAATCCTGATATTGACTCAGC 594
|||||||| ||||| |||| ||||| | | |||| | | |||||||||| ||||||||
Sbjct 432 GCTTCTTCCGGTTTGCTCTCGGATATGCAAAATTAC-GCGGATCCTGATATCGACTCAGC 490
Query 595 AGTTAGCACCAAGATTCCTGAACACAGTCCTGTTTCAGCAGTTTCATCGTATCTACGTAC 654
||||| |||||||||| |||| || ||||| ||||||||||| |||||||||||| ||
Sbjct 491 AGTTAATACCAAGATTCTTGAAGACGGTCCTATTTCAGCAGTTCCATCGTATCTACCAAC 550
Query 655 CGAGCCTTCGCTGCAGTTTGTTCAGCATGACTTTTGGCAACCAAAAACAAGTTGTGGAAC 714
||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct 551 CGAGCCTTCGCTGCAGTTTGTTCAGCATGACTTTTGGAAACCAAAA-CAAAT-------C 602
Query 715 AATTAACTGTTTTACAAATGAATTGTT-AACATCTGACGAAAAAACATCAGCCAGCTTGT 773
|||| | | ||| |||| ||||| ||| || |||| | |||| |||||||||
Sbjct 603 AATTG-CAAT---ACAGATGATTTGTTCAAC-TCAAACGAGGCTATATCACCCAGCTTGT 657
Query 774 CCACTGTCTGCTCACAAAGGGTACTTA-ACACTCTAACTGAAGCACTTAAGTCATCGGGT 832
|||| ||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 658 CCACCGTCTGTTCACAAAGGGTACT-ACACACTTTAACTGAAGCACTTAAGTCATCGGGT 716
Query 833 GTTAACATGTCAGAGACCATGATATCTGTGCAGTTAAGCCTTCGGAAAAGAGAAGATCGC 892
||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 717 GTTAACATGCCAGAGACCACGATATCTGTGCACTTAAGCCTTCGGAAAAGAGCAGATCGC 776
Query 893 GAGTATTCTGT-TGCTGCGTTTGCTTCTGAGGATAATGGTAATAGCATCGCTG-ATGAAG 950
||||||||| | |||||| |||||||||||||||||| ||||| ||||||| | ||||||
Sbjct 777 GAGTATTCT-TCTGCTGCTTTTGCTTCTGAGGATAATTGTAATGGCATCGC-GCATGAAG 834
Query 951 AAGGGGACTCTCCTACTGAAACTAGAAGCTTCTGCAATGATATTGATCATTCCCAGAAGA 1010
|||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 835 AAGGAGATTCTCCTACTGAAACTAGAAGCTTCTGCAGTGATATAGATCATTCCCAGAAGA 894
Query 1011 GAATAAGACGATAA--GATCTGGTT-TTCTATTTT 1042
||| |||| ||||| |||||| || || ||||||
Sbjct 895 GAACAAGAAGATAAAAGATCTGTTTATT-TATTTT 928
> Ahg476029 jgi|Araly1|476029|fgenesh2_kg.2__1159__AT1G69010.1
Length=1178
Score = 97.1 bits (52), Expect = 3e-19
Identities = 140/180 (78%), Gaps = 16/180 (9%)
Strand=Plus/Plus
Query 233 TCGAAACACTCAGAGACTGAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGT 292
|||||||| || | ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 158 TCGAAACATTCGGTCACTGAGCAACGGAGAAGAAGCAAAATCAATGAAAGATTTCAGA-T 216
Query 293 -TTAATG-GATATT-ATACCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTC 349
|| | | || | | || || || | ||| ||| |||||| |||||| ||||| |||
Sbjct 217 ATTGA-GAGA-ACTGATTCC-CA-A--CAG--TGAACAGAAAAGAGATACTGCTTCCTTC 268
Query 350 -TTGTTGGAGGTTATAGAGTATATTCACTTTCTT-CAAGAAAAAGTTCACATGTATGAAG 407
|| || ||||| ||||| ||| |||| | | || ||||| || || || | ||||||||
Sbjct 269 CTT-TTAGAGGTGATAGATTATGTTCAGTAT-TTACAAGAGAAGGTGCAAAAGTATGAAG 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5