BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38870.1
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356101 jgi|Araly1|356101|fgenesh1_pg.C_scaffold_7003274 963 0.0
> Ahg356101 jgi|Araly1|356101|fgenesh1_pg.C_scaffold_7003274
Length=1203
Score = 963 bits (521), Expect = 0.0
Identities = 614/658 (93%), Gaps = 9/658 (1%)
Strand=Plus/Minus
Query 1 ATGAAGCAGGAGGAGGGCCAGGTTTGTTtggtggtggtaggaatgggaatggaggaaatg 60
|||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||
Sbjct 1174 ATGAAGCAGGAGGAGGGCCAGGGTTGCGTGGTGGTGGTAAGAATGGGAATGGAGGGAATG 1115
Query 61 gaaagatcgacggaggtggaggaggaggaggaggaggtggtggtggtggaTTTAGGCCTG 120
|||| | ||| |||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 1114 GAAAAAACGATGGAGGTGGAGGAGGGGGAGGAGGTGGTGGTGGTGGTGGATTTAAGCCTG 1055
Query 121 GAAAGATCGGTGGCAGTGGAGGAAAGAGAGACCATGGTGGAGGAGGAGTGGGAAGAGGAG 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GAAAGATTGGTGGCAGTGGAGGAAAGAGAGACCATGGTGGAGGAGGAGTGGGAAGAGGAG 995
Query 181 GACGAGGCTGAAATGGGTTTggagggaatatcgatggaggaggagtgggaggaggctgag 240
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GATGAGGCTGAAATGGGTTCGGAGGGAATATCGATGGAGGAGGAGTGGGAGGAGGCTGAG 935
Query 241 gaggatgaggCTGAAATGGGTTTGGAGGGAAGAACGACGGAGGAGGAGAAGCTGGAGCTG 300
||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 934 GAGGACGAGGCTGAAATGGGTTTGGAGGGAATATTGATGGAGGAGGAGAAGCTGGAGCTG 875
Query 301 GAGGAGGCTGATGAAATATTGGAGGGAAGAACGACGGAGGAGTTGTGGGAGGAAGCTGAG 360
||||||||||| |||||||||||||||| ||||| |||||||| | | ||| ||||||
Sbjct 874 GAGGAGGCTGAGGAAATATTGGAGGGAATAACGATGGAGGAGTAG-G--AGGTGGCTGAG 818
Query 361 GAGGATGAGGCTGAAATGGGTTTGGAGGGAATATCGATGGAGGAGCAGGAGGTGGCTGAA 420
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 817 GAGGACGAGGCTGAAATGGGTTTGGAGGGAATATCGATGGAGGAGCAGGAGGCGGCTGAG 758
Query 421 GAGGACGAGGCTGAAATGGGTTTGGAGGGAATATCGATGGAGGTTCGGGAGGTGGCggag 480
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 757 GAGGACGAGGCTGAAATGGGTTTGGAGGGAATATCGATGGAGGAGCAGGAGGTGGCTGAG 698
Query 481 gaggacgaggctgaaacgggtttggagggaatattgagggaggaggagcaggaggtggat 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 697 GAGGACGAGGCTGAAACGGGTTTGGAGGGAATATTGACGGAGGAGGAGCAGGAGGTGGAT 638
Query 541 gaggaaataatggaggaaatattgatggaggaggagcgggaggTGGCTTAGGAAATAATG 600
||||||||||||||||||||||||||||||| || | |||||||| |||||||||||
Sbjct 637 GAGGAAATAATGGAGGAAATATTGATGGAGG-GG-G----AGGTGGCTGAGGAAATAATG 584
Query 601 GAGGAAATATCGATGGTGGCGGAGGACGAGGCTGAAATGGGTTTGGAGGAAAGATTGA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 583 GAGGAAATATCGATGGTGGCGGAGGACGAGGCTGAAATGGGTTTGGAGGAAATATTGA 526
Score = 305 bits (165), Expect = 2e-82
Identities = 352/435 (81%), Gaps = 42/435 (10%)
Strand=Plus/Minus
Query 215 tggaggaggagtgggaggaggctgaggaggatgaggCTGAAATGGGTTTGGAGGGAAGAA 274
|||||||||||||||| | ||||||||||||||||||||||||| |||||||| |
Sbjct 1017 TGGAGGAGGAGTGGGA--A----GAGGAGGATGAGGCTGAAATGGGTTCGGAGGGAATAT 964
Query 275 CGACGGAGGAGGAGAAGCTGGA-GCTGGAGGAGG-CTGA---TGAAAT---ATTGGAGGG 326
||| |||||||||| | ||| ||| ||||||| | || |||||| ||||||||
Sbjct 963 CGATGGAGGAGGAGTGGGAGGAGGCT-GAGGAGGAC-GAGGCTGAAATGGGTTTGGAGGG 906
Query 327 AAGAACGACGGAGGAGTTGTGGGAGGAAGCT-GAGGAGGATGAGGCTGAAATGGGTTTGG 385
|| | || ||||||| | | || |||| ||||||| ||| | ||||| ||||
Sbjct 905 AATATTGATGGAGGAGGAGAAGCTGG-AGCTGGAGGAGGCTGA-G--GAAAT---ATTGG 853
Query 386 AGGGAATATCGATGGAGGAGCAGGAGGTGGCTGAAGAGGACGAGGCTGAAATGGGTTTGG 445
|||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 852 AGGGAATAACGATGGAGGAGTAGGAGGTGGCTGAGGAGGACGAGGCTGAAATGGGTTTGG 793
Query 446 AGGGAATATCGATGGAGGTTCGGGAGGTGGCggaggaggacgaggctgaaacgggtttgg 505
|||||||||||||||||| | ||||| ||| ||||||||||||||||||| ||||||||
Sbjct 792 AGGGAATATCGATGGAGGAGCAGGAGGCGGCTGAGGAGGACGAGGCTGAAATGGGTTTGG 733
Query 506 agggaatattgagggaggaggagcaggaggtggatgagga--a--a---t-aa-----t- 551
||||||||| || ||||||| |||||||||| |||||| | | | || |
Sbjct 732 AGGGAATATCGATGGAGGAG---CAGGAGGTGGCTGAGGAGGACGAGGCTGAAACGGGTT 676
Query 552 -ggaggaaatattgatggaggaggagcgggaggTGGCTTAGGAAATAATGGAGGAAATAT 610
||||| |||||||| ||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 675 TGGAGGGAATATTGACGGAGGAGGAGCAGGAGGTGGATGAGGAAATAATGGAGGAAATAT 616
Query 611 CGATGGTGGCGGAGG 625
||||| || |||||
Sbjct 615 TGATGGAGGGGGAGG 601
Score = 287 bits (155), Expect = 8e-77
Identities = 348/433 (80%), Gaps = 46/433 (11%)
Strand=Plus/Minus
Query 158 TGGAGGAGGAGTGGGA--A----GAGGAGGACGAGGCTGAAATGGGTTTggagggaatat 211
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGAGGAGGAGTGGGAGGAGGCTGAGGAGGACGAGGCTGAAATGGGTTTGGAGGGAATAT 901
Query 212 cgatggaggaggagtgggaggaggct-gaggaggatgaggCTGAAATGGGTTTGGAGGGA 270
||||||||||||| | ||| ||| ||||||| ||| | ||||| |||||||||
Sbjct 900 TGATGGAGGAGGAGAAGCTGGA-GCTGGAGGAGGCTGA-G--GAAAT---ATTGGAGGGA 848
Query 271 AGAACGACGGAGGAGGAGAAGCTGGAGCTGGAGGAGG-CTGA---TGAAAT---ATTGGA 323
| ||||| ||||||| || || | | ||| ||||||| | || |||||| |||||
Sbjct 847 ATAACGATGGAGGAGTAGGAGGT-G-GCT-GAGGAGGAC-GAGGCTGAAATGGGTTTGGA 792
Query 324 GGGAAGAACGACGGAGGAGTTGTGGGAGGAAGCTGAGGAGGATGAGGCTGAAATGGGTTT 383
||||| | ||| |||||| | ||||| ||||||||||| |||||||||||||||||
Sbjct 791 GGGAATATCGATGGAGGA---GCAGGAGGCGGCTGAGGAGGACGAGGCTGAAATGGGTTT 735
Query 384 GGAGGGAATATCGATGGAGGAGCAGGAGGTGGCTGAAGAGGACGAGGCTGAAATGGGTTT 443
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 734 GGAGGGAATATCGATGGAGGAGCAGGAGGTGGCTGAGGAGGACGAGGCTGAAACGGGTTT 675
Query 444 GGAGGGAATATCGATGGAGGTTCGGGAGGTGGCggaggaggacgaggctgaaacgggttt 503
||||||||||| || ||||| || || || ||| ||| |||| ||| |
Sbjct 674 GGAGGGAATATTGACGGAGGA--GG-AGCAGG---AGGTGGATGAGG---AAATAA-T-- 627
Query 504 ggagggaatattgagggaggaggagcaggaggtggatgaggaaataatggaggaaatatt 563
||||| |||||||| ||||| || | ||| ||| |||||||||||||||||||||||
Sbjct 626 GGAGGAAATATTGATGGAGG-GG-G-AGG---TGGCTGAGGAAATAATGGAGGAAATATC 573
Query 564 gatggaggaggag 576
||||| || ||||
Sbjct 572 GATGGTGGCGGAG 560
Score = 200 bits (108), Expect = 1e-50
Identities = 192/230 (83%), Gaps = 16/230 (7%)
Strand=Plus/Minus
Query 321 GGAGGGAAGAACGACGGAGGAGTTGTGGGAGGAAGCTGAGGAGGATGAGGCTGAAATGGG 380
|||||||| | ||| ||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 974 GGAGGGAATATCGATGGAGGAGGAGTGGGAGGAGGCTGAGGAGGACGAGGCTGAAATGGG 915
Query 381 TTTGGAGGGAATATCGATGGAGGAGCAGGAGGTGG--CTGAAG-AGGAC-GAGGCTGAAA 436
|||||||||||||| |||||||||| || || ||| ||| || ||| | |||| |||
Sbjct 914 TTTGGAGGGAATATTGATGGAGGAGGAGAAGCTGGAGCTGGAGGAGG-CTGAGG---AAA 859
Query 437 TGGGTTTGGAGGGAATATCGATGGAGGT-TCGGGAGGTGGCggaggaggacgaggctgaa 495
| || |||||||||| ||||||||| | || ||||||| ||||||||||||||||||
Sbjct 858 TA--TT-GGAGGGAATAACGATGGAGGAGTAGG-AGGTGGCTGAGGAGGACGAGGCTGAA 803
Query 496 acgggtttggagggaatattgagggaggaggagcaggaggtggatgagga 545
| ||||||||||||||||| || ||||||| ||||||| || ||||||
Sbjct 802 ATGGGTTTGGAGGGAATATCGATGGAGGAG---CAGGAGGCGGCTGAGGA 756
Score = 163 bits (88), Expect = 1e-39
Identities = 134/155 (86%), Gaps = 8/155 (5%)
Strand=Plus/Minus
Query 154 ATGGTGGAGGAGGA-GTGGGAAGAGGAGGACGAGGCTGAAATGGGTTTggagggaatatc 212
|||| |||| |||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGGAGGAGTAGGAGGT-GGCTGAGGAGGACGAGGCTGAAATGGGTTTGGAGGGAATATC 783
Query 213 gatggaggaggagtgggaggaggctgaggaggatgaggCTGAAATGGGTTTGGAGGGAAG 272
|||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 782 GATGGAGGAGCA---GGAGGCGGCTGAGGAGGACGAGGCTGAAATGGGTTTGGAGGGAAT 726
Query 273 AACGACGGAGGAGGAGAAGCTGGAGCTGGAGGAGG 307
| ||| ||||||| || || | | ||| |||||||
Sbjct 725 ATCGATGGAGGAGCAGGAGGT-G-GCT-GAGGAGG 694
Score = 156 bits (84), Expect = 2e-37
Identities = 160/194 (82%), Gaps = 15/194 (8%)
Strand=Plus/Minus
Query 358 GAGGAGGATGAGGCTGAAATGGGTTTGGAGGGAATATCGATGGAGGAGCAG-G--AGGTG 414
||||||||||||||||||||||||| |||||||||||||||||||||| || | ||| |
Sbjct 1000 GAGGAGGATGAGGCTGAAATGGGTTCGGAGGGAATATCGATGGAGGAGGAGTGGGAGGAG 941
Query 415 GCTGAAGAGGACGAGGCTGAAATGGGTTTGGAGGGAATATCGATGGAGGTTCGGGAGGTG 474
||||| |||||||||||||||||||||||||||||||||| |||||||| || || |
Sbjct 940 GCTGAGGAGGACGAGGCTGAAATGGGTTTGGAGGGAATATTGATGGAGGA--GG-AGAAG 884
Query 475 GC-ggaggaggacgaggctga--aacgggtttggagggaatattgagggaggaggagcag 531
| |||| ||| |||||||| || || |||||||||| || ||||||| || |
Sbjct 883 -CTGGAGCTGGAGGAGGCTGAGGAAATA-TT-GGAGGGAATAACGATGGAGGAGTAG--G 829
Query 532 gaggtggatgagga 545
|||||| ||||||
Sbjct 828 -AGGTGGCTGAGGA 816
Score = 150 bits (81), Expect = 1e-35
Identities = 157/191 (82%), Gaps = 16/191 (8%)
Strand=Plus/Minus
Query 397 ATGGAGGAGCAGGAGGT-GGCTGAAGAGGACGAGGCTGAAATGGGTTTGGAGGGAATATC 455
|||| |||| |||| || || || ||||| |||||||||||||||| ||||||||||||
Sbjct 1021 ATGGTGGAGGAGGA-GTGGGAAGAGGAGGATGAGGCTGAAATGGGTTCGGAGGGAATATC 963
Query 456 GAT---GGAGG-TTCGGGAGGTGGCggaggaggacgaggctgaaacgggtttggagggaa 511
||| ||||| | |||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 962 GATGGAGGAGGAGT-GGGAGGAGGCTGAGGAGGACGAGGCTGAAATGGGTTTGGAGGGAA 904
Query 512 tattga--g-gga-g-g-a---ggagcaggaggtggatgaggaaataatggaggaaatat 562
|||||| | ||| | | | ||||| ||||| || |||||||||| |||||| ||||
Sbjct 903 TATTGATGGAGGAGGAGAAGCTGGAGCTGGAGGAGGCTGAGGAAATATTGGAGGGAATAA 844
Query 563 tgatggaggag 573
||||||||||
Sbjct 843 CGATGGAGGAG 833
Score = 60.2 bits (32), Expect = 2e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 621 GGAGGACGAGGCTGAAATGGGTTTGGAGGAAAGATTGA 658
||||||||||||||||||||||||||||| || |||||
Sbjct 935 GGAGGACGAGGCTGAAATGGGTTTGGAGGGAATATTGA 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24131806461
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5