BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38890.1 Length=849 Score E Sequences producing significant alignments: (Bits) Value Ahg494089 jgi|Araly1|494089|fgenesh2_kg.7__3522__AT5G38890.1 1162 0.0 Ahg485422 jgi|Araly1|485422|fgenesh2_kg.5__1414__AT5G38890.1 363 2e-99 > Ahg494089 jgi|Araly1|494089|fgenesh2_kg.7__3522__AT5G38890.1 Length=849 Score = 1162 bits (629), Expect = 0.0 Identities = 788/860 (92%), Gaps = 30/860 (3%) Strand=Plus/Plus Query 4 CTCAAATCGGAAAATTTTGAAACA-ATGACGACGGGGCTAGTAACGCCGGGAGATGTAAT 62 ||||||||||||| |||||||| | |||||||||| |||||||||||||||||||||||| Sbjct 1 CTCAAATCGGAAATTTTTGAAA-ATATGACGACGGAGCTAGTAACGCCGGGAGATGTAAT 59 Query 63 CGGGAAAGCGACAGAGTTTAAAGCTGGAAAAGGAGCTTACGTCAACGACGCCACCATCTA 122 ||||||||| || ||| ||| ||| |||||||||||||||||||||||| |||| ||||| Sbjct 60 CGGGAAAGCAACTGAGCTTAGAGCCGGAAAAGGAGCTTACGTCAACGACACCACAATCTA 119 Query 123 CGCTTCCCTCACAGGAACTTGCCGGATTGTTTCTCCTCTTCCCGAATCAATTGATCAGAG 182 |||||| |||||||||||| | ||||||||||||||||||||||||||| |||| ||||| Sbjct 120 CGCTTCTCTCACAGGAACTCGTCGGATTGTTTCTCCTCTTCCCGAATCACTTGACCAGAG 179 Query 183 AGCTATTGTGGAAGTTACAGGTCACAAGGCACATGGTCCTATTCCAGAGACTGGTTCTGT 242 |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| Sbjct 180 AGCTATTGTGGAAGTTACGGGTCACAAGGCACATGGTCCAATTCCAGAGCCTGGTTCTGT 239 Query 243 TGTCATAGCAAGAGTGACTAAAGTTATGACTAAGATGGCTGCTGTTGATATCTTGTGTGT 302 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 240 TGTCATAGCAAGAGTGACTAAAGTTATGGCTCGGATGGCTGCTGTTGATATCTTGTGTGT 299 Query 303 TGGTTCAAAAGCCGTTCGTGAAAATTTTGCTGGTGTAATTAGGCAACAAGATGTTAGAGC 362 ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 300 TGGTTCAAAGGCCGTTCGTGAAAATTTTGCCGGCGTAATTAGGCAACAAGATGTTAGAGC 359 Query 363 AACAGAGATTGACAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGC 422 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AACAGAGATTGATAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGC 419 Query 423 TATGGTTCTGTCTCTTGGTGATGCACGGGCTTACTACTTGTCAACTGCTAAGAATGAACT 482 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 TATGGTTCTGTCTCTTGGTGATGCACGGGCTTACTATTTGTCAACTGCTAAGAATGAACT 479 Query 483 TGGTGTGGTCTCAGCTGAAAGTGCTGCGGGCGAAACAATGGTTCCGATAAGTTGGACAGA 542 ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 480 TGGTGTGGTCTCAGCAGAAAGTGCTGAGGGAGAAACAATGGTTCCGATAAGTTGGACAGA 539 Query 543 GATGCAGTGCCCCTTGTCGGGCCAAACCGAGCAGAGAAAAGTTGCCAAGGTGGGTAATTG 602 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 540 GATGCAGTGCCCCTTGTCAGGCCAAACGGAGCAGAGAAAAGTTGCCAAGGTGGGTAATTG 599 Query 603 AATTCAAGACAACACTT-GGCTTCTCTCACATAATGAGGTGTGGTCTCTGCAGCAAGACA 661 ||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||| Sbjct 600 AATTCAAGACAACACTTTGGCTTCTCTCACATAATGTGGTGTGCTCTCTGCAACAAGACA 659 Query 662 GACATTT-GAGATTATTACAATTTTGAGCTCTTCTGTTGTTTG-TTATCAAGTGTAGAGA 719 || |||| |||||| |||||||||| || |||||||| |||||||||||||||| Sbjct 660 GA-ATTTTGAGATTGTTACAATTTT---CT-----GTTGTTTGGTTATCAAGTGTAGAGA 710 Query 720 TAACTTTAGACCAACTTGACCTT-TA--TTCGA-CAA--TAG---T---CAGGATACTAT 767 ||| |||||| |||||||||||| | ||| | ||| | | | ||||||||||| Sbjct 711 TAAGTTTAGAGCAACTTGACCTTATCCCTTC-ATCAAAGTGGGCATATTCAGGATACTAT 769 Query 768 TATTA-TTAG-G-ATACTTACAACTTCTTAAACTCGAAAGACATTTTGTTGTTAGAATTT 824 ||||| |||| | ||||| |||| ||||| ||||| |||||||||||||||||||||||| Sbjct 770 TATTAATTAGAGGATACTCACAAGTTCTTGAACTCAAAAGACATTTTGTTGTTAGAATTT 829 Query 825 GAACATAAATCCATAACTCC 844 |||||||||||||||||||| Sbjct 830 GAACATAAATCCATAACTCC 849 > Ahg485422 jgi|Araly1|485422|fgenesh2_kg.5__1414__AT5G38890.1 Length=773 Score = 363 bits (196), Expect = 2e-99 Identities = 358/430 (83%), Gaps = 35/430 (8%) Strand=Plus/Plus Query 88 GGAAAAGGAGCTTACGTCAACGACGCCACCATCTACGCTTCCCTCACAGGAACTTGCCGG 147 ||||||||||||||||||||||| | || ||||||||||| |||||||||||| | ||| Sbjct 35 GGAAAAGGAGCTTACGTCAACGATACAACAATCTACGCTTCTCTCACAGGAACTCGTCGG 94 Query 148 ATTGTTTCTCCTCTTCCCGAATCAATTGATCAGAGAGCTATTGTGGAAGTTACAGGTCAC 207 |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| Sbjct 95 ATTGTTTCTCCTCTTCCCGAATCACTTGACCAGAGAGCTATTGTGGAAGTTACGGGTCAC 154 Query 208 AAGGCACATGGTCCTATTCCAGAGACTGGTTCTGTTGTCATAGCAAGAGTGACTAAAGTT 267 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 155 AAGGCACATGGTCCAATTCCGGAGACTGGTTCTGTTGTCATAGCAAGAGTGACTAAAGTT 214 Query 268 ATGACTAAGATGGCTGCTGTTGATATCTTGTGTGTTGGTTCAAAAGCCGTTC--G-TGAA 324 ||| || ||||||||||||||||||||||||| ||||| |||| |||||| | ||| Sbjct 215 ATGGCTCGGATGGCTGCTGTTGATATCTTGTGTATTGGTCCAAAGGCCGTTTTTGCTGAC 274 Query 325 --AATTTTGCTGGTGTAATT---A-G-G-CAA-C-AAGATGTTAGAGCAACAGAGATTGA 374 |||| | | || | ||| | | | | | | || || | || | | |||||||||| Sbjct 275 TTAATTA-GTTTGT-TCATTTTCATGTGTCGATCTAA-AT-T-AGCG-A-CAGAGATTGA 327 Query 375 CAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGCTATGGTTCTGTC 434 || ||||||||||||||||| ||| |||||||||||||| || | | || | Sbjct 328 TAAGGTTGACATGCATCAGTCATTCAATGCTGGTGACATT-------CT--G-T-CT--C 374 Query 435 TCTTGGTGATGCACGGGCTTACTACTTGTCAACTGCTAAGAATGAACTTGGTGTGGTCTC 494 | | |||||||||| |||| |||| |||||||||| ||||||||| |||||||||||||| Sbjct 375 T-T-GGTGATGCACAGGCTGACTATTTGTCAACTGTTAAGAATGATCTTGGTGTGGTCTC 432 Query 495 AGCTGAAAGT 504 ||| || ||| Sbjct 433 AGCAGAGAGT 442 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31413283608 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5