BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38890.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494089 jgi|Araly1|494089|fgenesh2_kg.7__3522__AT5G38890.1 1162 0.0
Ahg485422 jgi|Araly1|485422|fgenesh2_kg.5__1414__AT5G38890.1 363 2e-99
> Ahg494089 jgi|Araly1|494089|fgenesh2_kg.7__3522__AT5G38890.1
Length=849
Score = 1162 bits (629), Expect = 0.0
Identities = 788/860 (92%), Gaps = 30/860 (3%)
Strand=Plus/Plus
Query 4 CTCAAATCGGAAAATTTTGAAACA-ATGACGACGGGGCTAGTAACGCCGGGAGATGTAAT 62
||||||||||||| |||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 1 CTCAAATCGGAAATTTTTGAAA-ATATGACGACGGAGCTAGTAACGCCGGGAGATGTAAT 59
Query 63 CGGGAAAGCGACAGAGTTTAAAGCTGGAAAAGGAGCTTACGTCAACGACGCCACCATCTA 122
||||||||| || ||| ||| ||| |||||||||||||||||||||||| |||| |||||
Sbjct 60 CGGGAAAGCAACTGAGCTTAGAGCCGGAAAAGGAGCTTACGTCAACGACACCACAATCTA 119
Query 123 CGCTTCCCTCACAGGAACTTGCCGGATTGTTTCTCCTCTTCCCGAATCAATTGATCAGAG 182
|||||| |||||||||||| | ||||||||||||||||||||||||||| |||| |||||
Sbjct 120 CGCTTCTCTCACAGGAACTCGTCGGATTGTTTCTCCTCTTCCCGAATCACTTGACCAGAG 179
Query 183 AGCTATTGTGGAAGTTACAGGTCACAAGGCACATGGTCCTATTCCAGAGACTGGTTCTGT 242
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 180 AGCTATTGTGGAAGTTACGGGTCACAAGGCACATGGTCCAATTCCAGAGCCTGGTTCTGT 239
Query 243 TGTCATAGCAAGAGTGACTAAAGTTATGACTAAGATGGCTGCTGTTGATATCTTGTGTGT 302
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 240 TGTCATAGCAAGAGTGACTAAAGTTATGGCTCGGATGGCTGCTGTTGATATCTTGTGTGT 299
Query 303 TGGTTCAAAAGCCGTTCGTGAAAATTTTGCTGGTGTAATTAGGCAACAAGATGTTAGAGC 362
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 300 TGGTTCAAAGGCCGTTCGTGAAAATTTTGCCGGCGTAATTAGGCAACAAGATGTTAGAGC 359
Query 363 AACAGAGATTGACAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGC 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AACAGAGATTGATAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGC 419
Query 423 TATGGTTCTGTCTCTTGGTGATGCACGGGCTTACTACTTGTCAACTGCTAAGAATGAACT 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TATGGTTCTGTCTCTTGGTGATGCACGGGCTTACTATTTGTCAACTGCTAAGAATGAACT 479
Query 483 TGGTGTGGTCTCAGCTGAAAGTGCTGCGGGCGAAACAATGGTTCCGATAAGTTGGACAGA 542
||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 480 TGGTGTGGTCTCAGCAGAAAGTGCTGAGGGAGAAACAATGGTTCCGATAAGTTGGACAGA 539
Query 543 GATGCAGTGCCCCTTGTCGGGCCAAACCGAGCAGAGAAAAGTTGCCAAGGTGGGTAATTG 602
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GATGCAGTGCCCCTTGTCAGGCCAAACGGAGCAGAGAAAAGTTGCCAAGGTGGGTAATTG 599
Query 603 AATTCAAGACAACACTT-GGCTTCTCTCACATAATGAGGTGTGGTCTCTGCAGCAAGACA 661
||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||
Sbjct 600 AATTCAAGACAACACTTTGGCTTCTCTCACATAATGTGGTGTGCTCTCTGCAACAAGACA 659
Query 662 GACATTT-GAGATTATTACAATTTTGAGCTCTTCTGTTGTTTG-TTATCAAGTGTAGAGA 719
|| |||| |||||| |||||||||| || |||||||| ||||||||||||||||
Sbjct 660 GA-ATTTTGAGATTGTTACAATTTT---CT-----GTTGTTTGGTTATCAAGTGTAGAGA 710
Query 720 TAACTTTAGACCAACTTGACCTT-TA--TTCGA-CAA--TAG---T---CAGGATACTAT 767
||| |||||| |||||||||||| | ||| | ||| | | | |||||||||||
Sbjct 711 TAAGTTTAGAGCAACTTGACCTTATCCCTTC-ATCAAAGTGGGCATATTCAGGATACTAT 769
Query 768 TATTA-TTAG-G-ATACTTACAACTTCTTAAACTCGAAAGACATTTTGTTGTTAGAATTT 824
||||| |||| | ||||| |||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 770 TATTAATTAGAGGATACTCACAAGTTCTTGAACTCAAAAGACATTTTGTTGTTAGAATTT 829
Query 825 GAACATAAATCCATAACTCC 844
||||||||||||||||||||
Sbjct 830 GAACATAAATCCATAACTCC 849
> Ahg485422 jgi|Araly1|485422|fgenesh2_kg.5__1414__AT5G38890.1
Length=773
Score = 363 bits (196), Expect = 2e-99
Identities = 358/430 (83%), Gaps = 35/430 (8%)
Strand=Plus/Plus
Query 88 GGAAAAGGAGCTTACGTCAACGACGCCACCATCTACGCTTCCCTCACAGGAACTTGCCGG 147
||||||||||||||||||||||| | || ||||||||||| |||||||||||| | |||
Sbjct 35 GGAAAAGGAGCTTACGTCAACGATACAACAATCTACGCTTCTCTCACAGGAACTCGTCGG 94
Query 148 ATTGTTTCTCCTCTTCCCGAATCAATTGATCAGAGAGCTATTGTGGAAGTTACAGGTCAC 207
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 95 ATTGTTTCTCCTCTTCCCGAATCACTTGACCAGAGAGCTATTGTGGAAGTTACGGGTCAC 154
Query 208 AAGGCACATGGTCCTATTCCAGAGACTGGTTCTGTTGTCATAGCAAGAGTGACTAAAGTT 267
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 155 AAGGCACATGGTCCAATTCCGGAGACTGGTTCTGTTGTCATAGCAAGAGTGACTAAAGTT 214
Query 268 ATGACTAAGATGGCTGCTGTTGATATCTTGTGTGTTGGTTCAAAAGCCGTTC--G-TGAA 324
||| || ||||||||||||||||||||||||| ||||| |||| |||||| | |||
Sbjct 215 ATGGCTCGGATGGCTGCTGTTGATATCTTGTGTATTGGTCCAAAGGCCGTTTTTGCTGAC 274
Query 325 --AATTTTGCTGGTGTAATT---A-G-G-CAA-C-AAGATGTTAGAGCAACAGAGATTGA 374
|||| | | || | ||| | | | | | | || || | || | | ||||||||||
Sbjct 275 TTAATTA-GTTTGT-TCATTTTCATGTGTCGATCTAA-AT-T-AGCG-A-CAGAGATTGA 327
Query 375 CAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGCTATGGTTCTGTC 434
|| ||||||||||||||||| ||| |||||||||||||| || | | || |
Sbjct 328 TAAGGTTGACATGCATCAGTCATTCAATGCTGGTGACATT-------CT--G-T-CT--C 374
Query 435 TCTTGGTGATGCACGGGCTTACTACTTGTCAACTGCTAAGAATGAACTTGGTGTGGTCTC 494
| | |||||||||| |||| |||| |||||||||| ||||||||| ||||||||||||||
Sbjct 375 T-T-GGTGATGCACAGGCTGACTATTTGTCAACTGTTAAGAATGATCTTGGTGTGGTCTC 432
Query 495 AGCTGAAAGT 504
||| || |||
Sbjct 433 AGCAGAGAGT 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5