BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38895.3
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947941 jgi|Araly1|947941|scaffold_704170.1 1114 0.0
Ahg488423 jgi|Araly1|488423|fgenesh2_kg.6__1557__AT5G15790.1 159 3e-38
> Ahg947941 jgi|Araly1|947941|scaffold_704170.1
Length=706
Score = 1114 bits (603), Expect = 0.0
Identities = 672/706 (95%), Gaps = 2/706 (0%)
Strand=Plus/Plus
Query 345 AAGTATTGATTTCGAAGATATGGGTGCTTTCTGTTGTTGCTTTCAAGTTGATCTCTTTGA 404
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAGTTTTGATTTTGAAGATATGGGTGCTTTCTGTTGTTGCTTTCAAGTTGATCTCTTTGA 61
Query 405 GAGTTATGTGAATCCAAACACTTCCATAACTAGGAACTGTCCTTGCCTTAATTGCTTCCT 464
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 62 GAGTTATGTGAATCCAAACACTTCAATGACTAGGAACTGTCCTTGCCTAAATTGCTTCCT 121
Query 465 CCAGAGTTTCATGGATTTGTATGCTTCGTTGTTTAGTAGAGGGGGAATGCATCCAATACC 524
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 122 CCAGAGTTTCATGGATTTGTATGCGTCGTTGTTTAATAGAGGGGGAATGCATCCAATACC 181
Query 525 TTCAACTGTAGAGACAGCTACAGTGATGAATTCAACAACTGCACTTGATGACTCTCTGTC 584
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 182 TTCAACTGTTGAGACTGCTACAGTGATGAATTCAACAACTGCACTCGATGACTCTCTATC 241
Query 585 TAGTGTATATCATTCTCCTCCAACACCATTGCCTTACGATGCTGATCCTAGGTACTTTCG 644
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TAGTGTGTATCATTCTCCTCCAACACCATTGCCTTACGATGCTGATCCTAGGTACTTTCG 301
Query 645 TTTTGTTAAGGGCTCTA-GTCATTCAGGTGAAGAATCAGAACCGTTAAGAGGTGATACTG 703
||||||||||||||| | | || |||||||||||||||||||| ||||||||||||||||
Sbjct 302 TTTTGTTAAGGGCTC-AGGCCACTCAGGTGAAGAATCAGAACCATTAAGAGGTGATACTG 360
Query 704 AAATGAGTTCTGAAGCTTTGGGTGATGGTGGAGCCAAGTGGAGTAAGTCTGATTCTGAAG 763
|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |
Sbjct 361 AAATGAGTTCTGAAGCTTTGGGTGGTGGTGGAACCAAAAGGAGTAAGTCTGATTCTGATG 420
Query 764 ATGGTTCGAAAGAAGTGTATACGAAAGGTTCATCAACCTTTACAAAGTCGAAAACAATGC 823
|||||||||||||||||||| | |||||||||| |||| || ||||||||||||||||||
Sbjct 421 ATGGTTCGAAAGAAGTGTATTCCAAAGGTTCATTAACCATTGCAAAGTCGAAAACAATGC 480
Query 824 CGGGGATAGAAGTTTATTATGCAGATTCGGATGATGAAGATATTTGTCCAACCTGCCTTG 883
| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 CCGGGATAGAAATTCATTATGCAGAATCGGATGATGAAGATATTTGTCCAACCTGCCTTG 540
Query 884 ATGATTACACTTTGGAGAATCCGAAGATAATCACCAAGTGTTCTCACCATTTCCACCTTA 943
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGATTACACTCCGGAGAATCCAAAGATAATCACCAAGTGTTCTCACCATTTCCACCTTA 600
Query 944 GCTGTATTTATGAATGGATGGAGAGAAGTGAAACTTGCCCCGTCTGTGGAAAGGTGATGG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTGTATTTATGAATGGATGGAGAGAAGTGAAACTTGCCCCGTCTGTGGAAAGGTGATGG 660
Query 1004 CATTTGATGAAAATGAAACTTCTTAGCATTGTAATAAAGACTTGCT 1049
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CATTTGATGAAAATGAAACTTCTTAGCATTGTAATAAAGACTTGCT 706
> Ahg488423 jgi|Araly1|488423|fgenesh2_kg.6__1557__AT5G15790.1
Length=1377
Score = 159 bits (86), Expect = 3e-38
Identities = 133/156 (85%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 849 TTCGGATGATGAAGATATTTGTCCAACCTGCCTTGATGATTACACTTTGGAGAATCCGAA 908
||| |||||||||||| | |||||||| || ||||| || ||||| | ||||| |||||
Sbjct 879 TTCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACACATCAGAGAACCCGAA 938
Query 909 GATAATCACCAAGTGTTCTCACCATTTCCACCTTAGCTGTATTTATGAATGGATGGAGAG 968
||| | || || |||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 939 GATTGTTACAAATTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAGAG 998
Query 969 AAGTGAAA-CTTGCCCCGTCTGTGGAAAGGTGATGG 1003
|||||||| || |||| || ||||||||||||||||
Sbjct 999 AAGTGAAAACT-GCCCTGTTTGTGGAAAGGTGATGG 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42125823285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5