BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38910.1 Length=669 Score E Sequences producing significant alignments: (Bits) Value Ahg891851 jgi|Araly1|891851|Al_scaffold_0007_3837 754 0.0 Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836 632 0.0 Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833 556 5e-158 Ahg494086 jgi|Araly1|494086|fgenesh2_kg.7__3519__AT5G38940.1 529 1e-149 Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861 327 5e-89 > Ahg891851 jgi|Araly1|891851|Al_scaffold_0007_3837 Length=666 Score = 754 bits (408), Expect = 0.0 Identities = 586/671 (87%), Gaps = 16/671 (2%) Strand=Plus/Plus Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAGC 60 ||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||||| | Sbjct 1 ATGAAAAGTCTCTCATTTCTTGCAATTCTATCTCTCTTGGCTATAACACTTTCATTAACC 60 Query 61 AAGGCTTCGGACCCAAGCTCTCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAGAT 120 |||||||| ||||||||| ||||||||||||| ||||| || || |||||||||| || Sbjct 61 AAGGCTTCAGACCCAAGCCCTCTTCAGGACTTCTGCGTCGGGGTGGACACCCCAGCTTAT 120 Query 121 GGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACTTC 180 || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 GGCGTATTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGATGACTTC 180 Query 181 TTTTT-TACAGGGCTCCACGAGGCAAGACCACCTAATCCAAAAACTGGGTCTAACGTAAC 239 ||| | | ||||| | || | ||||| |||||||||||||||||||||||| || || Sbjct 181 TTTATCT-CAGGGATTAACAAACCAAGAACACCTAATCCAAAAACTGGGTCTATTGTGAC 239 Query 240 AGCCGTCAATGTTAACAACCTACCAGGGTTAAACACTCTTGGAATCTC-ACTTGTCCGTA 298 | |||||||||||||| | | |||||||||||||| ||||||||||| | ||||||||| Sbjct 240 ACCCGTCAATGTTAACCAGATTCCAGGGTTAAACACCCTTGGAATCTCCA-TTGTCCGTA 298 Query 299 TCGACTATGGAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCGAGGTCT 358 | || |||| | | |||||||||||||||||||||| || ||||||||||||||| ||| Sbjct 299 TTGATTATGCAATAAACGGACAGAACCCACCTCACACTCATCCACGTGCCTCCGAGATCT 358 Query 359 TGTATGTCGCGGT-TGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAAAATCGC 417 ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 359 TGTATGTCGCG-TATGGAACACTTTTAGTTGGGTTTGTCACGTCAAACCCCGAAAATCGG 417 Query 418 CT-TTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTCATTCA 476 || ||| | |||| ||| |||||||||||||| || ||||||||| ||||||||||||| Sbjct 418 CTCTTT-ACTAAAGTACTCTACGAGGGTGATGTATTCGTGTTTCCAGAGGGACTCATTCA 476 Query 477 TTTCCAAGTGAACGTTGGAAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAGCCAAAA 536 |||||||| ||||||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 477 TTTCCAAGCGAACGTTGGGAAATATCCCGCGGTTGCATTCGCTGGTCTGAGCAGCCAAAA 536 Query 537 CCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCAC-AGATAGACCC-A 594 ||| || ||||||||||| || ||||||||||||||||||||||||| | |||||||| | Sbjct 537 CCCAGGGGTCATCACTATAGCCGACACCGTGTTTGGGTCTAACCCACCA-ATAGACCCGA 595 Query 595 AGTTTTCTTGCAA-GTGCATTCCAGGTTG-ACCCTAAGATTGTCATGGATCTACAGACCA 652 | | ||||||||| | || |||||| ||| || ||| || ||||||||| |||||||| | Sbjct 596 A-TGTTCTTGCAACG-GCGTTCCAG-TTGGACGCTACGACTGTCATGGAACTACAGACTA 652 Query 653 AGTTCATAAAA 663 |||||| |||| Sbjct 653 AGTTCAAAAAA 663 > Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836 Length=672 Score = 632 bits (342), Expect = 0.0 Identities = 566/673 (84%), Gaps = 20/673 (3%) Strand=Plus/Plus Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAG- 59 ||||| ||| || ||||||| | |||| ||||| || |||| ||||||||| |||| || Sbjct 7 ATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCATT-AGC 65 Query 60 CAAGGCTTCGGACCCAAGCTCTCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAGA 119 || ||||| || |||||| ||||||| |||||||| || | | ||||||| ||||||| Sbjct 66 CATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAGA 125 Query 120 TGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACTT 179 ||| |||||||| || ||||||||||||||||||||||| |||||||||| ||| ||||| Sbjct 126 TGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAACTCGTCACAGCAGATGACTT 185 Query 180 CTTTTT-TACAGGGCTCCACGAGGCAAGACC---ACCTAATCCAAAAACTGGGTCTAACG 235 |||||| | ||||||| || | |||||||| | ||| ||| | |||||| | || Sbjct 186 CTTTTTCT-CAGGGCTTCAAAATGCAAGACCGGTAACTAGTCC---AGTTGGGTCGACCG 241 Query 236 TAACAGCCGTCAATGTTAACAACCTACCAGGGTTAAACACTCTTGGAATCTCACTTGTCC 295 | ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| Sbjct 242 TGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAATCTCCCTTGTCC 301 Query 296 GTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCGAG 354 |||| || |||| | ||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 302 GTATTGATTATGCG-GTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGAG 360 Query 355 GTCTTG-TATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAAAA 413 ||||| | ||||| ||||||||| |||| ||||||||||| |||||||| || || Sbjct 361 ATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAA 419 Query 414 TCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTCAT 473 |||||| |||| |||| ||| ||||||||||||| |||||||||||| |||||||||| Sbjct 420 TCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCAT 479 Query 474 TCATTTCCAAGTGAACGTTGGAAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAGCCA 533 |||||||||| ||| |||| || | || |||||||||||||| | ||| |||||||| Sbjct 480 CCATTTCCAAGCAAACATTGGCAAGGAACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 539 Query 534 AAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGAT-AGAC 591 ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||| | || Sbjct 540 AAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTCTAACCCAGC-GATTA-AC 597 Query 592 CCAAGTTTTCTTGCAAGTGCATTCCAGGTTG-ACCCTAAGATTGTCATGGATCTACAGAC 650 |||||| |||||||||| || |||||| ||| |||||| ||||||| |||||||||||| Sbjct 598 CCAAGTATTCTTGCAAGGGCGTTCCAG-TTGGACCCTAGGATTGTCGTGGATCTACAGAA 656 Query 651 CAAGTTCATAAAA 663 |||||||| |||| Sbjct 657 CAAGTTCAAAAAA 669 > Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833 Length=672 Score = 556 bits (301), Expect = 5e-158 Identities = 553/672 (82%), Gaps = 28/672 (4%) Strand=Plus/Plus Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAGC 60 ||||| ||| |||||||||||||||| | ||| ||||||| | |||||| |||| ||| Sbjct 7 ATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTGACACTTCCATT-AGC 65 Query 61 -AAGGCTTCGGACCCAAGCTC-TCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAG 118 | || || || |||||| | ||||| |||||||| || | | ||||||| ||||| Sbjct 66 TATTGCATCTGATCCAAGC-CAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAA 124 Query 119 ATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACT 178 ||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |||| Sbjct 125 ATGGTGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAACTCGTCACAGCAGATGACT 184 Query 179 TCTTTTT-TACAGGGCTCCACGAGGCAAGA-CC--ACCTAATCCAAAAACTGGGTCTAAC 234 ||||||| | ||||||| || | |||||| || | ||| ||| | |||||| | | Sbjct 185 TCTTTTTCT-CAGGGCTTCAAAATGCAAGACCCGTAACTAGTCC---AGTTGGGTCGACC 240 Query 235 GTAACAGCCGTCAATGTTAACAACCTAC-CAGGGTTAAACACTCTTGGAATCTCACTTGT 293 || ||||||||||||||||||||||| | | |||||||| |||||||||||||| ||||| Sbjct 241 GTGACAGCCGTCAATGTTAACAACCTTCTC-GGGTTAAATACTCTTGGAATCTCCCTTGT 299 Query 294 CCGTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCG 352 |||||| || |||| | ||| ||||||||||||||||||||||||||||||||||| | | Sbjct 300 CCGTATTGATTATGCG-GTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGG 358 Query 353 AGGTCTTG-TATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAA 411 || ||||| | ||||| ||||||||| |||| ||||||||||| |||||||| || Sbjct 359 AGATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGAT 417 Query 412 AATCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTC 471 ||||||||||||| |||| || ||||||||||||| |||||||||||| |||||||| Sbjct 418 AATCGCCTTTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTC 477 Query 472 ATTCATTTCCAAGTGAACGTTGGAAAAT-ATCCGGCGGTTGCATTCGCTGGTCTCAGCAG 530 || |||||||||| ||| |||| || | || |||||||||||||| | ||| ||||| Sbjct 478 ATCCATTTCCAAGCAAACATTGGCAAGGGA-CCAGCGGTTGCATTCGCCGCTCTAAGCAG 536 Query 531 CCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGATAG 589 ||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||| Sbjct 537 CCAAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCC-ATAA 595 Query 590 ACCCAAGTTTTCTTGCAA-GTGCATTCCAGGTTGA-CCCTAAG-ATTGTCATGGATCTAC 646 |||||| | ||||||||| | || |||||| |||| ||| ||| | |||| ||||||| | Sbjct 596 ACCCAACTATTCTTGCAAAG-GCGTTCCAG-TTGAACCC-AAGGACTGTCGTGGATCTGC 652 Query 647 AGACCAAGTTCA 658 | | |||||||| Sbjct 653 AAAACAAGTTCA 664 > Ahg494086 jgi|Araly1|494086|fgenesh2_kg.7__3519__AT5G38940.1 Length=801 Score = 529 bits (286), Expect = 1e-149 Identities = 548/672 (82%), Gaps = 28/672 (4%) Strand=Plus/Plus Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAG- 59 ||||| ||| |||||| ||||||||| | ||| ||||||| |||||||| |||| | Sbjct 7 ATGAAGAGTCTCTCATATCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCATT-GGC 65 Query 60 CAAGGCTTCGGACCCAAGCTC-TCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAG 118 || ||||| || |||||| | ||||| |||||||| || | | ||||||| ||||| Sbjct 66 CATTGCTTCTGATCCAAGC-CAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAA 124 Query 119 ATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACT 178 |||| ||||||| || ||||||||||||||||| |||||||||||||||| ||| |||| Sbjct 125 ATGGAATTTTTGTTAATGGAAAGTTCTGCAAGGATCCGAAGCTCGTCACAGCAGATGACT 184 Query 179 TCTTTTT-TACAGGGCTCCACGAGGCAAGA-CC--ACCTAATCCAAAAACTGGGTCTAAC 234 ||||||| | ||||||| || | |||||| || | ||| ||| | |||||| | | Sbjct 185 TCTTTTTCT-CAGGGCTTCAAAATGCAAGACCCGTAACTAGTCC---AGTTGGGTCGACC 240 Query 235 GTAACAGCCGTCAATGTTAACAACCTAC-CAGGGTTAAACACTCTTGGAATCTCACTTGT 293 || ||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||| Sbjct 241 GTGACAGCCGTCAATGTTAACAACCTTCTC-GGGTTAAACACTCTTGGAATCTCCCTTGT 299 Query 294 CCGTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCG 352 ||||| || |||| | ||| ||||||| ||||| |||||||| |||||||||||| | | Sbjct 300 TCGTATTGATTATGCG-GTTAACGGACAAAACCCGCCTCACACTCACCCACGTGCCACGG 358 Query 353 AGGTCTT-GTATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAA 411 || |||| || ||||| ||||||||| |||| ||||||||||| |||||||| || Sbjct 359 AGATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGAT 417 Query 412 AATCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTC 471 |||||||| |||| |||| || ||||||||||||| |||||||||||| ||||||| Sbjct 418 AATCGCCTCTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTA 477 Query 472 ATTCATTTCCAAGTGAACGTTGG-AAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAG 530 || |||||||||| ||| |||| || | || || ||||||||||| | ||| ||||| Sbjct 478 ATCCATTTCCAAGCAAACATTGGCAAGGGA-CCAGCAGTTGCATTCGCCGCTCTAAGCAG 536 Query 531 CCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGATAG 589 ||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||| Sbjct 537 CCAAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCC-ATAG 595 Query 590 ACCCAAGTTTTCTTGCAA-GTGCATTCCAGGTTG-ACCCTAAGA-TTGTCATGGATCTAC 646 |||||| | ||||||||| | || |||||| ||| |||| ||| |||| ||||||||| Sbjct 596 ACCCAACTATTCTTGCAAAG-GCGTTCCAG-TTGGACCC-AAGGGTTGTTGTGGATCTAC 652 Query 647 AGACCAAGTTCA 658 |||||||||||| Sbjct 653 AGACCAAGTTCA 664 > Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861 Length=669 Score = 327 bits (177), Expect = 5e-89 Identities = 491/638 (77%), Gaps = 39/638 (6%) Strand=Plus/Plus Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTT-CATTAAG 59 ||||||||| |||| |||||||||| | ||||| ||||||| | ||| ||| |||| || Sbjct 7 ATGAAAAGTCTCTCCTTTCTTGCAGCTCTATCTCTCTTGGCTTTGACA-TTTCCATT-AG 64 Query 60 -CAAGGCTTCGGACCCAAGCTCTCTTCAGGACTTT-TGCGTTGGTGTCAACACCCCAGCA 117 | ||||| || |||||| | ||||| || ||| || || || || ||||| |||| | Sbjct 65 TCTTTGCTTCCGATCCAAGCCCCCTTCAAGA-TTTCTGTGTCGGCGTTAACACACCAGTA 123 Query 118 GATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAA-GCTCGTCACAGTAGAAGA 176 ||||| || |||||||| ||||| ||||||||||| || || | | || | | || || Sbjct 124 GATGGCGTGTTTGTGAATGGAAAATTCTGCAAGGATCC-AAGGATTGTTTCCGCGGATGA 182 Query 177 CTTCTTTTT-TACAGGGCTCCACGAGGCAAGACCACCTAATCCAAA-AA--C---TGGGT 229 |||||||| | | || || || | | ||| | ||| |||| || | ||||| Sbjct 183 TTTCTTTTTCT-CTGGACT-CA--A--C-AGAGCTGGAAATACAAATAACGCGGTTGGGT 235 Query 230 CTAACGTAACAGCCGTCAATGTTAACAACCTAC-CAGGGTTAAACACTCTTGGAATCTCA 288 | ||||| ||| ||||||||||||||||||| | ||| |||||||| |||||||||||| Sbjct 236 CCAACGTGACAACCGTCAATGTTAACAACCT-CGGAGGATTAAACACCCTTGGAATCTCA 294 Query 289 CTTGTCCGTATCGACTATGGAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCC 348 || || ||||| ||||||| | |||| |||||||||||||||||||||||||||||| Sbjct 295 CTAGTTCGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACGTGCC 354 Query 349 TCCGAGGTCTTG-TATGTCGCGGTT-GGAACACTTTTCGTTGGGTTTGTCACGTCAAACC 406 ||||| ||||| | |||| | ||||| || |||| |||||| || | ||||||| Sbjct 355 ACCGAGATCTTGGT-TGTC-CAACAAGGAACTCTACTCGTAGGGTTTATCTCATCAAACC 412 Query 407 CCGA---AAATCGCCTTTTCAGT-AAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCA 462 || ||| || |||||| | ||||| || ||| ||||||||| |||||||||||| Sbjct 413 AAGACGGAAACCGTCTTTTC-GCCAAAACGCTCAACGTGGGTGATGTATTTGTGTTTCCA 471 Query 463 CAGGGACTCATTCATTTCCAAGTG-AACGTTGGAA-AATATCCGGCGGTTGCATTCGCTG 520 | |||||||| |||||||| || ||| | ||| ||| ||| ||||| ||| |||||| Sbjct 472 GAAGGACTCATCCATTTCCA-GTTCAACCTAGGAGGAAT-TCCAGCGGTAGCAATCGCTG 529 Query 521 GTCTCAGCAGCCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACC 580 | | |||||||||||| | ||||| ||||| |||||| |||| | ||||||||||| | Sbjct 530 CTTTGAGCAGCCAAAACGCAGGTGTTATCACGATTGCTAACACAATATTTGGGTCTAAAC 589 Query 581 CACAGATAGACCC-AAGTTTTCTTGCAAGTGCATTCCA 617 || | |||||||| || | |||||||||| |||||||| Sbjct 590 CAGATATAGACCCGAA-TGTTCTTGCAAGGGCATTCCA 626 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24551158548 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5