BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38910.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891851 jgi|Araly1|891851|Al_scaffold_0007_3837 754 0.0
Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836 632 0.0
Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833 556 5e-158
Ahg494086 jgi|Araly1|494086|fgenesh2_kg.7__3519__AT5G38940.1 529 1e-149
Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861 327 5e-89
> Ahg891851 jgi|Araly1|891851|Al_scaffold_0007_3837
Length=666
Score = 754 bits (408), Expect = 0.0
Identities = 586/671 (87%), Gaps = 16/671 (2%)
Strand=Plus/Plus
Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAGC 60
||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||||| |
Sbjct 1 ATGAAAAGTCTCTCATTTCTTGCAATTCTATCTCTCTTGGCTATAACACTTTCATTAACC 60
Query 61 AAGGCTTCGGACCCAAGCTCTCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAGAT 120
|||||||| ||||||||| ||||||||||||| ||||| || || |||||||||| ||
Sbjct 61 AAGGCTTCAGACCCAAGCCCTCTTCAGGACTTCTGCGTCGGGGTGGACACCCCAGCTTAT 120
Query 121 GGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACTTC 180
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GGCGTATTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGATGACTTC 180
Query 181 TTTTT-TACAGGGCTCCACGAGGCAAGACCACCTAATCCAAAAACTGGGTCTAACGTAAC 239
||| | | ||||| | || | ||||| |||||||||||||||||||||||| || ||
Sbjct 181 TTTATCT-CAGGGATTAACAAACCAAGAACACCTAATCCAAAAACTGGGTCTATTGTGAC 239
Query 240 AGCCGTCAATGTTAACAACCTACCAGGGTTAAACACTCTTGGAATCTC-ACTTGTCCGTA 298
| |||||||||||||| | | |||||||||||||| ||||||||||| | |||||||||
Sbjct 240 ACCCGTCAATGTTAACCAGATTCCAGGGTTAAACACCCTTGGAATCTCCA-TTGTCCGTA 298
Query 299 TCGACTATGGAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCGAGGTCT 358
| || |||| | | |||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 299 TTGATTATGCAATAAACGGACAGAACCCACCTCACACTCATCCACGTGCCTCCGAGATCT 358
Query 359 TGTATGTCGCGGT-TGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAAAATCGC 417
||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 TGTATGTCGCG-TATGGAACACTTTTAGTTGGGTTTGTCACGTCAAACCCCGAAAATCGG 417
Query 418 CT-TTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTCATTCA 476
|| ||| | |||| ||| |||||||||||||| || ||||||||| |||||||||||||
Sbjct 418 CTCTTT-ACTAAAGTACTCTACGAGGGTGATGTATTCGTGTTTCCAGAGGGACTCATTCA 476
Query 477 TTTCCAAGTGAACGTTGGAAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAGCCAAAA 536
|||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 477 TTTCCAAGCGAACGTTGGGAAATATCCCGCGGTTGCATTCGCTGGTCTGAGCAGCCAAAA 536
Query 537 CCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCAC-AGATAGACCC-A 594
||| || ||||||||||| || ||||||||||||||||||||||||| | |||||||| |
Sbjct 537 CCCAGGGGTCATCACTATAGCCGACACCGTGTTTGGGTCTAACCCACCA-ATAGACCCGA 595
Query 595 AGTTTTCTTGCAA-GTGCATTCCAGGTTG-ACCCTAAGATTGTCATGGATCTACAGACCA 652
| | ||||||||| | || |||||| ||| || ||| || ||||||||| |||||||| |
Sbjct 596 A-TGTTCTTGCAACG-GCGTTCCAG-TTGGACGCTACGACTGTCATGGAACTACAGACTA 652
Query 653 AGTTCATAAAA 663
|||||| ||||
Sbjct 653 AGTTCAAAAAA 663
> Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836
Length=672
Score = 632 bits (342), Expect = 0.0
Identities = 566/673 (84%), Gaps = 20/673 (3%)
Strand=Plus/Plus
Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAG- 59
||||| ||| || ||||||| | |||| ||||| || |||| ||||||||| |||| ||
Sbjct 7 ATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCATT-AGC 65
Query 60 CAAGGCTTCGGACCCAAGCTCTCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAGA 119
|| ||||| || |||||| ||||||| |||||||| || | | ||||||| |||||||
Sbjct 66 CATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAGA 125
Query 120 TGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACTT 179
||| |||||||| || ||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 126 TGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAACTCGTCACAGCAGATGACTT 185
Query 180 CTTTTT-TACAGGGCTCCACGAGGCAAGACC---ACCTAATCCAAAAACTGGGTCTAACG 235
|||||| | ||||||| || | |||||||| | ||| ||| | |||||| | ||
Sbjct 186 CTTTTTCT-CAGGGCTTCAAAATGCAAGACCGGTAACTAGTCC---AGTTGGGTCGACCG 241
Query 236 TAACAGCCGTCAATGTTAACAACCTACCAGGGTTAAACACTCTTGGAATCTCACTTGTCC 295
| ||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 242 TGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAATCTCCCTTGTCC 301
Query 296 GTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCGAG 354
|||| || |||| | ||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 302 GTATTGATTATGCG-GTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGAG 360
Query 355 GTCTTG-TATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAAAA 413
||||| | ||||| ||||||||| |||| ||||||||||| |||||||| || ||
Sbjct 361 ATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAA 419
Query 414 TCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTCAT 473
|||||| |||| |||| ||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 420 TCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCAT 479
Query 474 TCATTTCCAAGTGAACGTTGGAAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAGCCA 533
|||||||||| ||| |||| || | || |||||||||||||| | ||| ||||||||
Sbjct 480 CCATTTCCAAGCAAACATTGGCAAGGAACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 539
Query 534 AAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGAT-AGAC 591
||||||||||||||||||||||||| |||| |||||||||||||||||| | ||| | ||
Sbjct 540 AAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTCTAACCCAGC-GATTA-AC 597
Query 592 CCAAGTTTTCTTGCAAGTGCATTCCAGGTTG-ACCCTAAGATTGTCATGGATCTACAGAC 650
|||||| |||||||||| || |||||| ||| |||||| ||||||| ||||||||||||
Sbjct 598 CCAAGTATTCTTGCAAGGGCGTTCCAG-TTGGACCCTAGGATTGTCGTGGATCTACAGAA 656
Query 651 CAAGTTCATAAAA 663
|||||||| ||||
Sbjct 657 CAAGTTCAAAAAA 669
> Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833
Length=672
Score = 556 bits (301), Expect = 5e-158
Identities = 553/672 (82%), Gaps = 28/672 (4%)
Strand=Plus/Plus
Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAGC 60
||||| ||| |||||||||||||||| | ||| ||||||| | |||||| |||| |||
Sbjct 7 ATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTGACACTTCCATT-AGC 65
Query 61 -AAGGCTTCGGACCCAAGCTC-TCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAG 118
| || || || |||||| | ||||| |||||||| || | | ||||||| |||||
Sbjct 66 TATTGCATCTGATCCAAGC-CAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAA 124
Query 119 ATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACT 178
||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 125 ATGGTGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAACTCGTCACAGCAGATGACT 184
Query 179 TCTTTTT-TACAGGGCTCCACGAGGCAAGA-CC--ACCTAATCCAAAAACTGGGTCTAAC 234
||||||| | ||||||| || | |||||| || | ||| ||| | |||||| | |
Sbjct 185 TCTTTTTCT-CAGGGCTTCAAAATGCAAGACCCGTAACTAGTCC---AGTTGGGTCGACC 240
Query 235 GTAACAGCCGTCAATGTTAACAACCTAC-CAGGGTTAAACACTCTTGGAATCTCACTTGT 293
|| ||||||||||||||||||||||| | | |||||||| |||||||||||||| |||||
Sbjct 241 GTGACAGCCGTCAATGTTAACAACCTTCTC-GGGTTAAATACTCTTGGAATCTCCCTTGT 299
Query 294 CCGTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCG 352
|||||| || |||| | ||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 300 CCGTATTGATTATGCG-GTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGG 358
Query 353 AGGTCTTG-TATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAA 411
|| ||||| | ||||| ||||||||| |||| ||||||||||| |||||||| ||
Sbjct 359 AGATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGAT 417
Query 412 AATCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTC 471
||||||||||||| |||| || ||||||||||||| |||||||||||| ||||||||
Sbjct 418 AATCGCCTTTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTC 477
Query 472 ATTCATTTCCAAGTGAACGTTGGAAAAT-ATCCGGCGGTTGCATTCGCTGGTCTCAGCAG 530
|| |||||||||| ||| |||| || | || |||||||||||||| | ||| |||||
Sbjct 478 ATCCATTTCCAAGCAAACATTGGCAAGGGA-CCAGCGGTTGCATTCGCCGCTCTAAGCAG 536
Query 531 CCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGATAG 589
||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||
Sbjct 537 CCAAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCC-ATAA 595
Query 590 ACCCAAGTTTTCTTGCAA-GTGCATTCCAGGTTGA-CCCTAAG-ATTGTCATGGATCTAC 646
|||||| | ||||||||| | || |||||| |||| ||| ||| | |||| ||||||| |
Sbjct 596 ACCCAACTATTCTTGCAAAG-GCGTTCCAG-TTGAACCC-AAGGACTGTCGTGGATCTGC 652
Query 647 AGACCAAGTTCA 658
| | ||||||||
Sbjct 653 AAAACAAGTTCA 664
> Ahg494086 jgi|Araly1|494086|fgenesh2_kg.7__3519__AT5G38940.1
Length=801
Score = 529 bits (286), Expect = 1e-149
Identities = 548/672 (82%), Gaps = 28/672 (4%)
Strand=Plus/Plus
Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAG- 59
||||| ||| |||||| ||||||||| | ||| ||||||| |||||||| |||| |
Sbjct 7 ATGAAGAGTCTCTCATATCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCATT-GGC 65
Query 60 CAAGGCTTCGGACCCAAGCTC-TCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAG 118
|| ||||| || |||||| | ||||| |||||||| || | | ||||||| |||||
Sbjct 66 CATTGCTTCTGATCCAAGC-CAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAA 124
Query 119 ATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACT 178
|||| ||||||| || ||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 125 ATGGAATTTTTGTTAATGGAAAGTTCTGCAAGGATCCGAAGCTCGTCACAGCAGATGACT 184
Query 179 TCTTTTT-TACAGGGCTCCACGAGGCAAGA-CC--ACCTAATCCAAAAACTGGGTCTAAC 234
||||||| | ||||||| || | |||||| || | ||| ||| | |||||| | |
Sbjct 185 TCTTTTTCT-CAGGGCTTCAAAATGCAAGACCCGTAACTAGTCC---AGTTGGGTCGACC 240
Query 235 GTAACAGCCGTCAATGTTAACAACCTAC-CAGGGTTAAACACTCTTGGAATCTCACTTGT 293
|| ||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||
Sbjct 241 GTGACAGCCGTCAATGTTAACAACCTTCTC-GGGTTAAACACTCTTGGAATCTCCCTTGT 299
Query 294 CCGTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCG 352
||||| || |||| | ||| ||||||| ||||| |||||||| |||||||||||| | |
Sbjct 300 TCGTATTGATTATGCG-GTTAACGGACAAAACCCGCCTCACACTCACCCACGTGCCACGG 358
Query 353 AGGTCTT-GTATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAA 411
|| |||| || ||||| ||||||||| |||| ||||||||||| |||||||| ||
Sbjct 359 AGATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGAT 417
Query 412 AATCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTC 471
|||||||| |||| |||| || ||||||||||||| |||||||||||| |||||||
Sbjct 418 AATCGCCTCTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTA 477
Query 472 ATTCATTTCCAAGTGAACGTTGG-AAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAG 530
|| |||||||||| ||| |||| || | || || ||||||||||| | ||| |||||
Sbjct 478 ATCCATTTCCAAGCAAACATTGGCAAGGGA-CCAGCAGTTGCATTCGCCGCTCTAAGCAG 536
Query 531 CCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGATAG 589
||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||
Sbjct 537 CCAAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCC-ATAG 595
Query 590 ACCCAAGTTTTCTTGCAA-GTGCATTCCAGGTTG-ACCCTAAGA-TTGTCATGGATCTAC 646
|||||| | ||||||||| | || |||||| ||| |||| ||| |||| |||||||||
Sbjct 596 ACCCAACTATTCTTGCAAAG-GCGTTCCAG-TTGGACCC-AAGGGTTGTTGTGGATCTAC 652
Query 647 AGACCAAGTTCA 658
||||||||||||
Sbjct 653 AGACCAAGTTCA 664
> Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861
Length=669
Score = 327 bits (177), Expect = 5e-89
Identities = 491/638 (77%), Gaps = 39/638 (6%)
Strand=Plus/Plus
Query 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTT-CATTAAG 59
||||||||| |||| |||||||||| | ||||| ||||||| | ||| ||| |||| ||
Sbjct 7 ATGAAAAGTCTCTCCTTTCTTGCAGCTCTATCTCTCTTGGCTTTGACA-TTTCCATT-AG 64
Query 60 -CAAGGCTTCGGACCCAAGCTCTCTTCAGGACTTT-TGCGTTGGTGTCAACACCCCAGCA 117
| ||||| || |||||| | ||||| || ||| || || || || ||||| |||| |
Sbjct 65 TCTTTGCTTCCGATCCAAGCCCCCTTCAAGA-TTTCTGTGTCGGCGTTAACACACCAGTA 123
Query 118 GATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAA-GCTCGTCACAGTAGAAGA 176
||||| || |||||||| ||||| ||||||||||| || || | | || | | || ||
Sbjct 124 GATGGCGTGTTTGTGAATGGAAAATTCTGCAAGGATCC-AAGGATTGTTTCCGCGGATGA 182
Query 177 CTTCTTTTT-TACAGGGCTCCACGAGGCAAGACCACCTAATCCAAA-AA--C---TGGGT 229
|||||||| | | || || || | | ||| | ||| |||| || | |||||
Sbjct 183 TTTCTTTTTCT-CTGGACT-CA--A--C-AGAGCTGGAAATACAAATAACGCGGTTGGGT 235
Query 230 CTAACGTAACAGCCGTCAATGTTAACAACCTAC-CAGGGTTAAACACTCTTGGAATCTCA 288
| ||||| ||| ||||||||||||||||||| | ||| |||||||| ||||||||||||
Sbjct 236 CCAACGTGACAACCGTCAATGTTAACAACCT-CGGAGGATTAAACACCCTTGGAATCTCA 294
Query 289 CTTGTCCGTATCGACTATGGAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCC 348
|| || ||||| ||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 295 CTAGTTCGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACGTGCC 354
Query 349 TCCGAGGTCTTG-TATGTCGCGGTT-GGAACACTTTTCGTTGGGTTTGTCACGTCAAACC 406
||||| ||||| | |||| | ||||| || |||| |||||| || | |||||||
Sbjct 355 ACCGAGATCTTGGT-TGTC-CAACAAGGAACTCTACTCGTAGGGTTTATCTCATCAAACC 412
Query 407 CCGA---AAATCGCCTTTTCAGT-AAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCA 462
|| ||| || |||||| | ||||| || ||| ||||||||| ||||||||||||
Sbjct 413 AAGACGGAAACCGTCTTTTC-GCCAAAACGCTCAACGTGGGTGATGTATTTGTGTTTCCA 471
Query 463 CAGGGACTCATTCATTTCCAAGTG-AACGTTGGAA-AATATCCGGCGGTTGCATTCGCTG 520
| |||||||| |||||||| || ||| | ||| ||| ||| ||||| ||| ||||||
Sbjct 472 GAAGGACTCATCCATTTCCA-GTTCAACCTAGGAGGAAT-TCCAGCGGTAGCAATCGCTG 529
Query 521 GTCTCAGCAGCCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACC 580
| | |||||||||||| | ||||| ||||| |||||| |||| | ||||||||||| |
Sbjct 530 CTTTGAGCAGCCAAAACGCAGGTGTTATCACGATTGCTAACACAATATTTGGGTCTAAAC 589
Query 581 CACAGATAGACCC-AAGTTTTCTTGCAAGTGCATTCCA 617
|| | |||||||| || | |||||||||| ||||||||
Sbjct 590 CAGATATAGACCCGAA-TGTTCTTGCAAGGGCATTCCA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5