BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38940.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494086 jgi|Araly1|494086|fgenesh2_kg.7__3519__AT5G38940.1 1232 0.0
Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833 1081 0.0
Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836 992 0.0
Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861 449 1e-125
> Ahg494086 jgi|Araly1|494086|fgenesh2_kg.7__3519__AT5G38940.1
Length=801
Score = 1232 bits (667), Expect = 0.0
Identities = 757/801 (95%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 15 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCA 74
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATGAAGAGTCTCTCATATCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCA 60
Query 75 TTAGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 134
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 120
Query 135 GCCAATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCAAAGCTGGTCACAGCAGAT 194
|| ||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 121 GCAAATGGAATTTTTGTTAATGGAAAGTTCTGCAAGGATCCGAAGCTCGTCACAGCAGAT 180
Query 195 GACTTCTTTTTCTCAGGGCTTCAAACTGCAAGACCCATTACTAGTCCCGTTGGGTCGACC 254
||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||
Sbjct 181 GACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACCCGTAACTAGTCCAGTTGGGTCGACC 240
Query 255 GTGACAGCCGTCAATGTTAACAACCTTCTTGGATTAAACACTCTTGGAATCTCCCTTGTC 314
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 GTGACAGCCGTCAATGTTAACAACCTTCTCGGGTTAAACACTCTTGGAATCTCCCTTGTT 300
Query 315 CGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACAGAG 374
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||
Sbjct 301 CGTATTGATTATGCGGTTAACGGACAAAACCCGCCTCACACTCACCCACGTGCCACGGAG 360
Query 375 ATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAAT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAAT 420
Query 435 CGCCTATTCTCAAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCCGAGGGACTCATC 494
||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 421 CGCCTCTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTAATC 480
Query 495 CATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCAA 554
||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 481 CATTTCCAAGCAAACATTGGCAAGGGACCAGCAGTTGCATTCGCCGCTCTAAGCAGCCAA 540
Query 555 AACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAAACCCA 614
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 AACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAGACCCA 600
Query 615 ACTATTCTTGCAAAGGCATTCCAGTTGAACCCAAGGGTTGTCATGGATCTACAGACCAAG 674
||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 601 ACTATTCTTGCAAAGGCGTTCCAGTTGGACCCAAGGGTTGTTGTGGATCTACAGACCAAG 660
Query 675 TTCAAGAAATAATGATATCGTGATTTGAGTTGCTTTCCCTTTATGTACTTGTGCCTGAAT 734
||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 661 TTCAAGAAATAATAATATTGTGATTTGAATTGCTTTCCCTTTATGTACTTGTGCATGAAT 720
Query 735 AAGGATCTTGTATTTCCGTTTATCATATCATCAT-A--TGATGTCTTT-TTTGCTTTTAC 790
|| |||||||||||||||| ||| ||||||||| | |||||||||| |||||||||||
Sbjct 721 AACAATCTTGTATTTCCGTTCATCGTATCATCATGACATGATGTCTTTCTTTGCTTTTAC 780
Query 791 CTTGATTCAATTCTAAATAAA 811
|||||||||||||||||||||
Sbjct 781 CTTGATTCAATTCTAAATAAA 801
> Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833
Length=672
Score = 1081 bits (585), Expect = 0.0
Identities = 644/673 (96%), Gaps = 2/673 (0%)
Strand=Plus/Plus
Query 15 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCA 74
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTGACACTTCCA 60
Query 75 TTAGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 134
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGCTATTGCATCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 120
Query 135 GCCAATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCC-AAAGCTGGTCACAGCAGA 193
|| ||||| |||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 121 GCAAATGGTGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAA-CTCGTCACAGCAGA 179
Query 194 TGACTTCTTTTTCTCAGGGCTTCAAACTGCAAGACCCATTACTAGTCCCGTTGGGTCGAC 253
|||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||
Sbjct 180 TGACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACCCGTAACTAGTCCAGTTGGGTCGAC 239
Query 254 CGTGACAGCCGTCAATGTTAACAACCTTCTTGGATTAAACACTCTTGGAATCTCCCTTGT 313
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 240 CGTGACAGCCGTCAATGTTAACAACCTTCTCGGGTTAAATACTCTTGGAATCTCCCTTGT 299
Query 314 CCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACAGA 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGA 359
Query 374 GATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAA 419
Query 434 TCGCCTATTCTCAAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCCGAGGGACTCAT 493
|||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 TCGCCTTTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCAT 479
Query 494 CCATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 553
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 CCATTTCCAAGCAAACATTGGCAAGGGACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 539
Query 554 AAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAAACCC 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAAACCC 599
Query 614 AACTATTCTTGCAAAGGCATTCCAGTTGAACCCAAGGGTTGTCATGGATCTACAGACCAA 673
|||||||||||||||||| |||||||||||||||||| |||| ||||||| || | |||
Sbjct 600 AACTATTCTTGCAAAGGCGTTCCAGTTGAACCCAAGGACTGTCGTGGATCTGCAAAACAA 659
Query 674 GTTCAAGAAATAA 686
|||||||||||||
Sbjct 660 GTTCAAGAAATAA 672
> Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836
Length=672
Score = 992 bits (537), Expect = 0.0
Identities = 629/674 (93%), Gaps = 4/674 (1%)
Strand=Plus/Plus
Query 15 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCA 74
||||| |||||||||||| ||||||| | ||| || |||||| ||||| |||||||||||
Sbjct 1 ATGGCGATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCA 60
Query 75 TTAGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 134
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TTAGCCATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 120
Query 135 GCCA-ATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCC-AAAGCTGGTCACAGCAG 192
| || |||| |||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 121 G-CAGATGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAAA-CTCGTCACAGCAG 178
Query 193 ATGACTTCTTTTTCTCAGGGCTTCAAACTGCAAGACCCATTACTAGTCCCGTTGGGTCGA 252
||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||
Sbjct 179 ATGACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACCGGTAACTAGTCCAGTTGGGTCGA 238
Query 253 CCGTGACAGCCGTCAATGTTAACAACCTTCTTGGATTAAACACTCTTGGAATCTCCCTTG 312
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 239 CCGTGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAATCTCCCTTG 298
Query 313 TCCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACAG 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 TCCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGG 358
Query 373 AGATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATA 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATA 418
Query 433 ATCGCCTATTCTCAAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCCGAGGGACTCA 492
||||||| ||| | |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 419 ATCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCA 478
Query 493 TCCATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCC 552
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 TCCATTTCCAAGCAAACATTGGCAAGGAACCAGCGGTTGCATTCGCCGCTCTAAGCAGCC 538
Query 553 AAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAAACC 612
||||||||||||||||||||||||| ||||| ||||||||| |||||||||| || ||||
Sbjct 539 AAAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTCTAACCCAGCGATTAACC 598
Query 613 CAACTATTCTTGCAAAGGCATTCCAGTTGAACCCAAGGGTTGTCATGGATCTACAGACCA 672
||| ||||||||||| ||| ||||||||| |||| ||| ||||| |||||||||||| ||
Sbjct 599 CAAGTATTCTTGCAAGGGCGTTCCAGTTGGACCCTAGGATTGTCGTGGATCTACAGAACA 658
Query 673 AGTTCAAGAAATAA 686
||||||| ||||||
Sbjct 659 AGTTCAAAAAATAA 672
> Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861
Length=669
Score = 449 bits (243), Expect = 1e-125
Identities = 517/644 (80%), Gaps = 39/644 (6%)
Strand=Plus/Plus
Query 15 ATGGCAATGAAGAGTCTCTCATTTCTTGCAG-TGCTCTCTCTCTTGGCTTTAACACTTCC 73
||||| ||||| |||||||| |||||||||| | || |||||||||||||| ||| ||||
Sbjct 1 ATGGCGATGAAAAGTCTCTCCTTTCTTGCAGCT-CTATCTCTCTTGGCTTTGACATTTCC 59
Query 74 ATTAGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTT-TGTGTCAGCGCCAACAC-C 131
||||| | ||||||| |||||||||| |||||||| ||| |||||| ||| ||||| |
Sbjct 60 ATTAGTCTTTGCTTCCGATCCAAGCCCCCTTCAAGA-TTTCTGTGTCGGCGTTAACACAC 118
Query 132 TCAGCCA-ATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCAAAGCTGGTCACAGC 190
||| | ||||||| ||||| |||||||| ||||||||||| |||| | | || | ||
Sbjct 119 -CAG-TAGATGGCGTGTTTGTGAATGGAAAATTCTGCAAGGATCCAAGGATTGTTTCCGC 176
Query 191 AGATGACTTCTTTTTCTCAGGGCTTC-A-A-A-CT-GCAAGACCCATTACTAGTCCCGTT 245
||||| ||||||||||| || | || | | | || | || || || || | | |||
Sbjct 177 GGATGATTTCTTTTTCTCTGGAC-TCAACAGAGCTGGAAATACAAATAAC--G--CGGTT 231
Query 246 GGGTCGACCGTGACAGCCGTCAATGTTAACAACCTTC-TTGGATTAAACACTCTTGGAAT 304
||||| | ||||||| |||||||||||||||||| || ||||||||||| ||||||||
Sbjct 232 GGGTCCAACGTGACAACCGTCAATGTTAACAACC-TCGGAGGATTAAACACCCTTGGAAT 290
Query 305 CTCCCTTGTCCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACG 364
||| || || ||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct 291 CTCACTAGTTCGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACG 350
Query 365 TGCCACAGAGATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAA 424
|||||| ||||||||||||||| |||||||||| || |||||||||||| || |||||||
Sbjct 351 TGCCACCGAGATCTTGGTTGTCCAACAAGGAACTCTACTCGTAGGGTTTATCTCATCAAA 410
Query 425 CC----CGGATAATCGCCTATTCTC-AAAA-GTTCTCAACGAGGGTGATGTATTTGTGTT 478
|| |||| || || || ||| | |||| | ||||||| ||||||||||||||||||
Sbjct 411 CCAAGACGGA-AACCGTCTTTTCGCCAAAACG--CTCAACGTGGGTGATGTATTTGTGTT 467
Query 479 TCCCGAGGGACTCATCCATTTTCAAG--CAAACATTGGCAAGGCA--CCAGCGGTTGCAT 534
||| || |||||||||||||| || | ||| | | || | || | |||||||| |||
Sbjct 468 TCCAGAAGGACTCATCCATTTCCA-GTTCAACC-TAGG-A-GGAATTCCAGCGGTAGCAA 523
Query 535 TCGCCGCTCTAAGCAGCCAAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGG 594
|||| ||| | |||||||||||| | ||||| ||||| ||||| ||||| | ||||||
Sbjct 524 TCGCTGCTTTGAGCAGCCAAAACGCAGGTGTTATCACGATTGCTAACACAATATTTGGGT 583
Query 595 CTAACCCAGCCATAAACCC-AACTATTCTTGCAAAGGCATTCCA 637
|||| |||| ||| |||| || | ||||||||| |||||||||
Sbjct 584 CTAAACCAGATATAGACCCGAA-TGTTCTTGCAAGGGCATTCCA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5