BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38970.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494085 jgi|Araly1|494085|fgenesh2_kg.7__3518__AT5G38970.1 2591 0.0
Ahg484717 jgi|Araly1|484717|fgenesh2_kg.5__709__AT3G30180.1 1197 0.0
> Ahg494085 jgi|Araly1|494085|fgenesh2_kg.7__3518__AT5G38970.1
Length=1666
Score = 2591 bits (1403), Expect = 0.0
Identities = 1588/1677 (95%), Gaps = 14/1677 (1%)
Strand=Plus/Plus
Query 83 TTTTAAAACAGAGCAGAAAACAGAGTGAGATGGGAGCAATGATGGTGATGATGGGTCTTC 142
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TTTTAAAACAGAGCAGATAACAGAGTGAGATGGGAACAATGATGGTGATGATGGGTCTTC 60
Query 143 TCTTGATCATCGTGTCTCTCTGTTCCGCTCTCCTTCGATGGAATCAGATGCGATATACCA 202
|||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCTTTATCATTGTCTCGCTCTGTTCCGCTCTTCTTCGATGGAATCAGATGCGATATACCA 120
Query 203 AGAATGGTCTTCCTCCTGGAACCATGGGCTGGCCAATCTTTGGCGAAACCACCGAGTTTC 262
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AGAATGGTCTCCCTCCTGGAACCATGGGCTGGCCAATCTTTGGTGAAACCACCGAGTTTC 180
Query 263 TCAAACAAGGCCCCAACTTCATGAGAAACCAAAGACTCCGATACGGGAGTTTCTTCAAAT 322
||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 181 TCAAACACGGCCCCAACTTCATGAGAAACCAAAGACTCCGATATGGGAATTTTTTCAAAT 240
Query 323 CTCATCTTCTAGGTTGTCCAACGTTAATCTCAATGGACTCAGAAGTAAACAGATACATTT 382
|||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 241 CTCATCTTCTTGGTTGTCCAACGTTAGTCTCGATGGACTCAGAAGTAAACAGATACATTT 300
Query 383 TAAAGAACGAATCAAAAGGTTTGGTTCCTGGTTACCCACAATCGATGCTTGATATACTTG 442
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 301 TAAAGAACGAATCAAAAGGTTTGGTTCCTGGTTACCCACAATCCATGCTTGATATTCTCG 360
Query 443 GGACTTGTAACATGGCTGCGGTTCACGGTTCGAGCCACCGGCTTATGAGAGGCTCGCTTC 502
| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 361 GAACTTGCAACATGGCTGCGGTTCACGGTTCGAGCCACCGGCTTATGAGAGGTTCACTTC 420
Query 503 TGTCTCTCATAAGCTCGACCATGATGAGAGATCATATCTTGCCTAAAGTTGATCACTTCA 562
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCTCTTATAAGCTCGACCATGATGAGAGATCATATCTTGCCTAAAGTTGATCACTTCA 480
Query 563 TGAGAAGCTATCTTGATCAGTGGAATGAGCTTGAGGTTATTGATATCCAAGATAAGACCA 622
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 TGAGAAGCTATCTTGGTCAGTGGAATGAGCTTGAGGTTATTGATATCCAGGATAAGACCA 540
Query 623 AACATATGGCATTTTTATCTTCACTGACACAAATCGCTGGGAACTTAAGAAAACCATTTG 682
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 AACATATGGCATTTTTATCTTCACTGACACAAATCGCTGGGAATTTAAGAAAACCATTCA 600
Query 683 TTGAAGAATTCAAAACTGCATTCTTCAAGCTTGTTGTTGGGACTTTATCCGTTCCGATTG 742
|||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
Sbjct 601 TTGAGGAATTCAAAACTGCGTTCTTCAAGCTTGTTGTTGGAACTTTATCGGTTCCGATCG 660
Query 743 ATCTTCCGGGCACAAATTATCGTTGCGGAATCCAAGCAAGAAATAACATTGATAGGTTGC 802
||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||| |
Sbjct 661 ATCTTCCCGGCACAAATTATCGTTGCGGGATCCAAGCAAGAAAGAACATTGATCGGTTTC 720
Query 803 TAAGAGAGCTGATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TAAGAGAGCTGATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTT 780
Query 863 ACTTGATGAAGAAGGAAGGTAACCGATACCCGTTAACCGATGAAGAGATAAGAGACCAAG 922
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 ACTTGATGAAGAAGGAAGATAACCGATACCCATTAACCGATGAAGAGATAAGAGACCAAG 840
Query 923 TTGTGACGATTTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTA 982
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCGTGACGATTTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTA 900
Query 983 AGTACCTTCATGATCACCCAAAAGCTCTTCAAGAACTAAGAGCTGAGCATTTGGCATTCA 1042
|||||||||||||||||||||||||||||| |||||| ||| | ||||||||||| || |
Sbjct 901 AGTACCTTCATGATCACCCAAAAGCTCTTCTAGAACTCAGAACAGAGCATTTGGCTTTAA 960
Query 1043 GGGAAAGAAAACGA-CAGGACGAACCACTCGGTCTTGAGGACGTGAAGTCAATGAAGTTC 1101
||||||| |||||| || ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 961 GGGAAAGTAAACGACCA-GACGAACCACTTGGTCTTGAGGATGTAAAGTCAATGAAGTTC 1019
Query 1102 ACTCGAGCTGTGATTTATGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGG 1161
||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTAGAGCTGTTATTTTTGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGG 1079
Query 1162 AAAACTACTCGTGACTTGGAAATCAACGGTTATTTAATCCCAAAAGGATGGAGAATTTAT 1221
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 AAAACTACTCGTGACTTAGAAATCAATGGTTATTTAATCCCAAAAGGATGGAGAATTTAT 1139
Query 1222 GTATACACGAGGGAAATTAATTACGATGCAAATCTTTATGAAGACCCATTGATCTTTAAT 1281
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1140 GTATACACGAGGGAAATTAATTACGATGCAAATCTATATGAAGACCCATTGATCTTTAAT 1199
Query 1282 CCATGGAGATGGATGAAGAAGAGCTTGGAGTCACAAAACTCATGCTTTGTGTTTGGAGGT 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCATGGAGATGGATGAAGAAGAGCTTGGAGTCACAAAACTCATGCTTTGTGTTTGGAGGT 1259
Query 1342 GGGACAAGGCTTTGTCCTGGTAAGGAACTAGGGATTGTCGAGATCTCGAGCTTTCTCCAT 1401
||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1260 GGGACAAGGCTTTGTCCTGCCAATGAACTAGGGATTGTCGAGATCTCGAGCTTCCTCCAT 1319
Query 1402 TACTTTGTTACGAGATACAGATGGGAGGAAATAGGAGGGGATGAATTAATGGTGTTTCCG 1461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TACTTTGTTACGAGATACAGATGGGAGGAAATAGGAGGGGATGAATTAATGGTGTTTCCA 1379
Query 1462 AGAGTTTTTGCACCAAAAGGCTTCCATCTTAGGATTTCACCCTACTAATTTCTAACTTTT 1521
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 AGAGTTTTTGCACCAAAAGGCTTCCATCTTAGGATTTCACCCTACTAATTT-TAACTTTT 1438
Query 1522 TAAATAAAATAATATAGATTTTATGCACGCAGAGGATACAGAAGACGTATATGAAGAAAC 1581
|||| ||||||||||||||||||||||| | ||| |||||||||||||||||||| |||
Sbjct 1439 TAAAAAAAATAATATAGATTTTATGCACA-A-AGGTTACAGAAGACGTATATGAAGCAAC 1496
Query 1582 AAGAGAAGATAATTATAAAttttttt-ttt-tttttGACACATATTTTTGTTCTCATTTA 1639
|| |||||||||||||| || ||||| ||| |||||||| ||||||||||||||||||||
Sbjct 1497 AAAAGAAGATAATTATATATATTTTTCTTTCTTTTTGACCCATATTTTTGTTCTCATTTA 1556
Query 1640 AGAGTCTTCTGGTCATATGTACATAACCATAAGCAGCATAATCTTATTATATATCTATTT 1699
|||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||
Sbjct 1557 AGAGTCTTCTGGTCATATGTACATAACCATAAGCAG--T--T-TTATTATAT--CTATTT 1609
Query 1700 CTGTATAACTCTATTTGAACTTGAAGTATATCTCTGGCTATTTCTTGATGATGTTCT 1756
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1610 CTCTGTAACTCTATTTGAACTTGAAGTATATCTCTGGCTAATTCTTGATGATGTTCT 1666
> Ahg484717 jgi|Araly1|484717|fgenesh2_kg.5__709__AT3G30180.1
Length=1740
Score = 1197 bits (648), Expect = 0.0
Identities = 1179/1429 (83%), Gaps = 62/1429 (4%)
Strand=Plus/Plus
Query 110 AGATGGG-AGCAATGATGGTGATGATGGGTCTTCTCT-TGATCATCGTGTCT-C-TCTGT 165
||||||| | || |||| |||| |||||||||| | ||||||| ||| | | | |||
Sbjct 121 AGATGGGCA-TAACGATGATGATTTTGGGTCTTCT-TGTGATCAT--TGTTTGCATATGT 176
Query 166 TCCGCTCTCCTTCGATGGAATCAGATGCGATATACCAAGAATGGTCTTCCTCCTGGAACC 225
|| ||||| || |||||||| |||||||||||| |||| || ||||||||||||||||||
Sbjct 177 TCTGCTCTTCTCCGATGGAACCAGATGCGATATTCCAAAAAAGGTCTTCCTCCTGGAACC 236
Query 226 ATGGGCTGGCCAATCTTTGGCGAAACCACCGAGTTTCTCAAACAAGGCCCCA-ACTTCAT 284
|||||||||||||| ||||| |||||||| |||||||| |||||||| || | | |||||
Sbjct 237 ATGGGCTGGCCAATTTTTGGTGAAACCACTGAGTTTCTTAAACAAGGACC-AGATTTCAT 295
Query 285 GAGAAACCAAAGACTCCGATACGGGAGTTTCTTCAAATCTCATC-TTCTAGGTTGTCCAA 343
|| |||||||||||| |||| |||||||||||||| ||||| | |||| ||||| ||||
Sbjct 296 GAAAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCA-CATTCTTGGTTGCCCAA 354
Query 344 CGTTAATCTCAATGGACTCAGAAG-TAAACAGATACATTTTAAAGAACGAATCAAAAGGT 402
| || ||||||||||| |||| | |||||||||||||||||| ||||||||| |||||
Sbjct 355 CAATAGTCTCAATGGACGCAGA-GCTAAACAGATACATTTTAATGAACGAATCGAAAGGA 413
Query 403 -TTGGTT-CCTGGTTACCCACAATCGATGCTTGATATACTTGGGACTTGTAACATGGCTG 460
||| | || |||||||||||||||||||| ||||| || ||||| || ||||| || |
Sbjct 414 CTTG-TCGCC-GGTTACCCACAATCGATGCTCGATATCCTCGGGACATGCAACATAGCCG 471
Query 461 CGGTTCACGGTTCGAGCCACCGGCTTATGAGAGGCTCGCTT-CTGTCTCTCATAAGCTCG 519
||||||| || ||||||||||||| |||||||||||| || || ||| | |||||| ||
Sbjct 472 CGGTTCATGGCCCGAGCCACCGGCTCATGAGAGGCTCG-TTGCTTTCTTTAATAAGCCCG 530
Query 520 ACCATGATGAGAGATCATATCTTGCCTAA-AGTTGATCACTTCATGAGAAGCTATCTT-G 577
||||||||| ||| ||| |||||||||| | ||||| | |||||||||| ||||||| |
Sbjct 531 GCCATGATGAAAGACCATCTCTTGCCTAAGA-TTGATGATTTCATGAGAAACTATCTTTG 589
Query 578 ATCAGT-GGAATGAGCTTGAGGTTA-TTGATATCCAAGATAAGACCAAACATATGGCATT 635
| || || |||| |||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 590 -TG-GTTGGGATGATCTTGAGAC-AGTTGATATCCAAGAAAAGACCAAACATATGGCATT 646
Query 636 TTTATCTTCACTGACACAAATCGCTGGGAACTT--AAGAAAACCATTTGTTGAAGAAT-T 692
||| || || || |||||| |||| || ||| || ||||||| |||||||||| |
Sbjct 647 TTTGTCATCGTTGTTACAAATAGCTGAGA-CTTTGAA-AAAACCAGAGGTTGAAGAATAT 704
Query 693 CAAAACTGCA-TTCTTCAAGCTTGTTGTTGGGA-CT-TTATCCGTTCCGATTGATCTTCC 749
| ||| | | || |||||||||||||| |||| || || || || ||||| ||||| ||
Sbjct 705 -AGAACAG-AGTTTTTCAAGCTTGTTGT-GGGAACTCTT-TCGGTCCCGATCGATCTCCC 760
Query 750 GGGCACAAATTATCGTTGCGGAATCCAAGCAAGAAATAACATTGATAGGTTGCTAAGAGA 809
||| || || || || | ||| ||||||||||||| || || |||||||| | | |||
Sbjct 761 GGGAACGAACTACCGCAGTGGAGTCCAAGCAAGAAACAATATCGATAGGTTATTGACAGA 820
Query 810 GCTGATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTTACTTGAT 869
|||||||||||| | ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 821 ACTGATGCAAGAAAGAAGAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGAT 880
Query 870 GAAGAAGGAAGGTAACCGATACCCGTTAACCGATGAAGAGATAAGAGACCAAGTTGTGAC 929
||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| || ||
Sbjct 881 GAAGAAGGAAGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTCGTAAC 940
Query 930 GATTTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTAAGTACCT 989
||| |||||||||||||| || ||||||||||| || || ||||||||||||||||| ||
Sbjct 941 GATCTTGTATTCGGGTTATGAGACTGTCTCTACAACTTCTATGATGGCTCTTAAGTATCT 1000
Query 990 TCATGATCACCCAAAAGCTCTTCAAGAACTAAGA-GCTGAGCATTTGGC-ATTCAGGGAA 1047
|||||||| ||| |||||||| ||||||| ||| | || |||||||| || |||||
Sbjct 1001 CCATGATCATCCAGAAGCTCTTGAAGAACTCAGAAGA-GAACATTTGGCTATA-AGGGAG 1058
Query 1048 AGAAAACGACAGGACGAACCACTCGGTCTTGAGGACGTGAAGTCAATGAAGTTCACTCGA 1107
|||||||||| |||||||| ||| ||| || || | || || ||||| |||||||||
Sbjct 1059 AGAAAACGACCTGACGAACCGCTCACTCTCGACGATATTAAATCTATGAAATTCACTCGA 1118
Query 1108 GCTGTGAT-TTATGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGGAAAAC 1166
|||||||| || |||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1119 GCTGTGATCTT-TGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTGAGGAAAAC 1177
Query 1167 TACTCGTGACTTGGAAATCAACGGTTATTTAATCCCAAAAGGATGGAGAATTTATGTATA 1226
||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1178 TACTCACGACTTGGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATA 1237
Query 1227 CACGAGGGAAATTAATTACGATGCAAATCTTTATGAAGACCCATTGATCTTTAATCCATG 1286
||| || || ||||| || ||| || |||||||||||| ||| |||||||||| |||||
Sbjct 1238 CACAAGAGAGATTAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATG 1297
Query 1287 GAGATGGATG-AAGAAGAGCTTGGAGTCACAAAA-CTCATG-CTTTGTGTTTGGAGGTGG 1343
|||||||||| || |||||||| || ||| || | || || ||| | |||||||||||
Sbjct 1298 GAGATGGATGGAA-AAGAGCTTAGAATCA-AAGAGCT-ATTTCTTACTCTTTGGAGGTGG 1354
Query 1344 -GACAAGGCTTTGTCCTGGTAAGGAACTAGGGAT-TGTCGA-GATCTCGAGCTTTCTCCA 1400
| | |||||||| ||||| ||||||||||| || | | || | |||| ||||| || ||
Sbjct 1355 AG-CTAGGCTTTGCCCTGGAAAGGAACTAGGAATCTCT-GAAG-TCTCAAGCTTCCTTCA 1411
Query 1401 TTACTTTGTTACGAGATACAGATGGGAGGA-AATAGGAGGGGATGAATTAATGGTGTTTC 1459
|||||| |||| | |||||||||||| || ||| |||| || |||||||||| ||||
Sbjct 1412 CTACTTTATTACAAAATACAGATGGGAAGAGAAT-GGAGAAGACAAATTAATGGTCTTTC 1470
Query 1460 CGAGAGTTTTTGCACCAAAAGGCTTCCATCTTAGGAT-TTCACCCTACT 1507
| ||||||| |||||||||||| | |||||||| | | |||||| ||||
Sbjct 1471 CAAGAGTTTCTGCACCAAAAGGATACCATCTTAAG-TGTTCACCTTACT 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5