BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38990.1
Length=2785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947934 jgi|Araly1|947934|scaffold_704163.1 2715 0.0
Ahg891841 jgi|Araly1|891841|Al_scaffold_0007_3827 444 2e-123
> Ahg947934 jgi|Araly1|947934|scaffold_704163.1
Length=2700
Score = 2715 bits (1470), Expect = 0.0
Identities = 2281/2661 (86%), Gaps = 101/2661 (4%)
Strand=Plus/Plus
Query 65 GCAACGGCGTCGTAT-GAGCCCACTGATGTCTTTCTCATCAATTGCGGCGATACCTCCA- 122
||||||||| ||| | |||||||| ||||||||||||||||| |||||||||| | ||
Sbjct 89 GCAACGGCGGCGT-TCGAGCCCACCGATGTCTTTCTCATCAACTGCGGCGATA-ATTCAG 146
Query 123 ACAACATGGACTACAGTGGCCGGAAC-TGGACGACGGAGAATCCGAAATTTATGTCATCG 181
|| || ||| | || |||| |||| |||||| | ||| | ||| | || | ||
Sbjct 147 CCACCAAAGACCAAAGCGGCC-GAACATGGACGCCCGAGGAGGTAAAAGCTCTGCCGTCA 205
Query 182 AATGCAGTTGACGACGCGTCGTTCACTTCA-TCTGCGTCATACCAAGAATCAGGGATTCC 240
||| || ||| ||||| ||||||||| | |||| ||||||||| ||||||||| |
Sbjct 206 AATTCA---GACTTTGCGTCCTTCACTTCAGAC-GCGTTATACCAAGACTCAGGGATTGC 261
Query 241 TCAAGTGCCGTACTTGAAAGCTAGGATTTTCCGATATGA-TTTCACTTACAGTTTTCCAG 299
||||||||||||| |||||||| |||||||||||| | | ||| || |||||||||| ||
Sbjct 262 TCAAGTGCCGTACATGAAAGCTCGGATTTTCCGATCTAACTTT-ACGTACAGTTTTCTAG 320
Query 300 TCTCTCCCGGCTGGAAATTCCTCCGGTTATACTTTTATCCGACCCGTTACGGATCCGATT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 321 TCTCTCCCGGCTGGAAATTCCTCCGGTTATACTTTTATCCGACCCGTTACGGTTCCGGTT 380
Query 360 TCGACGCCGTTAAATCCTTCTT-CTCCGTCAACGTCAACCGTTTCACTCTCTTGCA-TAA 417
||||||| | || |||||||| || |||||||||||| || |||||||||| | ||
Sbjct 381 TCGACGCTGCTAGTTCCTTCTTCCT-CGTCAACGTCAATGGTATCACTCTCTT-AAGAAA 438
Query 418 CTTCA--G-TG---T------AAAAGCTTCCATACCGGAGTC-AAGTTCTCTAATCAAAG 464
||||| | || | |||||||||| |||||||||| ||| ||||| |||||||
Sbjct 439 CTTCAGCGCTGATTTAACGGCAAAAGCTTCCTTACCGGAGTCAAAG-TCTCTTATCAAAG 497
Query 465 AGTTTATCGTTCCGGTTAACCAAACTCTTGATCTCACGTTCACGCCCTCTCCGAATTCAT 524
| || |||||||||||| |||| ||||| ||||||||||||| || |||| | |||| |
Sbjct 498 AATTCATCGTTCCGGTTCACCAGACTCTCAATCTCACGTTCACACCGTCTCGGGATTCGT 557
Query 525 TAGCTTTCGTTAACGGAATCGAGATTATCTCCATGCCTGACCGGTTTTACTCAAAGGGAG 584
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 558 TTGCTTTCGTTAACGGAATCGAGATTGTCTCCATGCCTGACCGGTTTTACTCAAAGGGAG 617
Query 585 GATTTGACGACGTTG-TAAGAAACGTTGGTAGGGACGTTGACTTCGAGATAGACAACTCC 643
|||||||| || || ||| |||||| || || | ||||||||||||||||| ||||||
Sbjct 618 GATTTGACAAC-ATGATAACAAACGTCGGCAGCAATGTTGACTTCGAGATAGATAACTCC 676
Query 644 ACGGCTTTCGAGACCGTTTATCGGGTAAACGTAGGTGGA-AAAGTGGTGGGCGACGTCGG 702
||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 677 ACGGCTTTCGAGACCGTTTATCGGGTAAACGTAGGTGGAGGAA-CAGTCAATGACGTCGG 735
Query 703 AGATTCGGGAATGTTCCGGCGTTGGCTTTCCGATGAAGGTTTCTTACTCGGTATTAATTC 762
||||| ||||||||| |||| |||||||| |||| | | || | || | ||||||
Sbjct 736 CGATTCAGGAATGTTCAGGCGGTGGCTTTCTGATG-A---TGATT--T-GG-A-TAATTC 786
Query 763 GGGAGCCATTCCGAATATAACAGGTGTAAAGATCAACTACACGGATAAAACTCCCGCGTA 822
|||| |||| ||| || |||| || |||||||||||||| || |||||||| | |||
Sbjct 787 GGGAATCATTGTGAACATTCCAGGAGTCAAGATCAACTACACTGAGAAAACTCCGGGGTA 846
Query 823 CGTTGCGCCGGAAGATGTATACACGACGTGTCGCCTGATGGGGAA-C-A-AAGACAGTCC 879
||||| ||||||||||| ||| | |||| ||||| |||||||| | | ||||| ||
Sbjct 847 TGTTGCCCCGGAAGATGTGTACGCCACGTCTCGCCAAATGGGGAACCTACAAGAC---CC 903
Query 880 TGAGCTAAACCTGAATTTCAACCTGACGTGGCTCTTTGA-AGTCGATGCCGGGTTTGCCT 938
| | || ||||| |||||||| ||||||| || || | |||||| ||||||||| ||
Sbjct 904 TAAACTGAACCTTAATTTCAATCTGACGTTTTTCCTT-ACAGTCGACGCCGGGTTTAACT 962
Query 939 ATATAGTGAGGCTTCATTTCTGTGAGACGCAACCGGAAGTCAACAAAACGGGTGACCGCG 998
| | |||||||| |||||||||||||| | ||| |||| ||||| || | ||||
Sbjct 963 ACCTCGTGAGGCTACATTTCTGTGAGACTCTCCCGCAAGTGAACAATACCAACCAACGCG 1022
Query 999 TCTTCTCCATCTTCT-TCGGATATCA-ACTGGCCATGCGTGA-A-ATGGACGTGTTTCGG 1054
||||||||||||| | | |||||||| | ||| | | | || | |||||||| ||| |
Sbjct 1023 TCTTCTCCATCTT-TGTGGGATATCAGA-TGG-C-TACCAGATATGTGGACGTGATTCTG 1078
Query 1055 CTGAGTGGTGGTTTTCGGCTA-CCGATGTATCTAGATTTCAAGGT-ACTTGTCGACGCCG 1112
|||| |||||| |||| | || ||||||||||||||||| || | ||| | |
Sbjct 1079 ATGAGCGGTGGTCCTCGG-AATCCCATGTATCTAGATTTCAATGTGA-ATGTTG--G-TT 1133
Query 1113 ACGGAACT-AGCCAGAGACCTAG-TCTTCGAGTTGACTTGACA-CCTTA-CAAAGAGGAC 1168
| || | ||| ||||||| | ||| ||| |||| || || || || | || ||
Sbjct 1134 TTGAAAATGGGCC-GAGACCT-GATCTACGACTTGA-TTTTCATCC-TATGATGGA-TAC 1188
Query 1169 T-ATCCAACCTATTACGACGCTATTTTGAGTGGTGTAGAGATTCTCAAGCTGAGTAATTC 1227
| || || ||||||| || || || | | |||||| |||||||||||||||| | ||||
Sbjct 1189 TGATGCATCCTATTATGAAACTCTTCTAAATGGTGTGGAGATTCTCAAGCTGAATGATTC 1248
Query 1228 TGATGGTAATCTTGCGGGGCTTAATCCAATTCCTC-A--ACTAA--GTC-CACCACCACA 1281
| | |||| ||| || || | |||||||| ||||| | || || | | || ||||| |
Sbjct 1249 TCAAGGTATTCTCGCAGGACCTAATCCAAATCCTCAATTACCAACGGACTCAACACCA-A 1307
Query 1282 ATC-TATAACG-CCACTAAAAG-GAAAAGGCAAGTCA-TCACATGTTTTGCCAATAAT-A 1336
| | | ||| | || || ||| |||||| || | | |||||| ||||| | || | |
Sbjct 1308 ACCGTGTAA-GCCCGCT-GAAGAAAAAAGGTAA-TAAGTCACATCTTTTGACTAT-CTCA 1363
Query 1337 ATTGCAGTGGTTGGTTCTGCAGTTGCGCTAGCGTTTTTTGTTCTTGTTGTTGTCCTCGTT 1396
|||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct 1364 CTTGCAGTGGTTGGTTCTGTAGTTGCGCTAGCGATTTTTGTTGTTGTTGTTGTCCTCGTT 1423
Query 1397 GTTATGAAGAGAAAGAAGAAGAGCAACGAGTCTAGTGTAGATACCACGAA-CAAGCCTTC 1455
||||||||||| ||||||| ||||||||||| ||||||| ||||||| || |||||| ||
Sbjct 1424 GTTATGAAGAGGAAGAAGATGAGCAACGAGTTTAGTGTACATACCAC-AAGCAAGCCATC 1482
Query 1456 TACGAACTCGTCATGGGGTCCTCTTCTGCACGGGACAGGCTCTACAAATACAAAATCTGC 1515
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1483 TACGAACTCGTCATGGGGACCTCTTCCGCACGGGACAGGTTCTACAAATACAAAATCAGC 1542
Query 1516 CTCATCTCTTCCATCAGATCTCTGCCGTCGATTCTCCATCTACGAAATCAAATCCGCCAC 1575
| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1543 CACATCTCTCCCATCAGATCTTTGCCGTCGATTCTCCATCTCCGAAATCAAATCCGCCAC 1602
Query 1576 AAATGATTTCGAGGAAAAACTAATCATAGGAGTAGGCGGGTTTGGTTCTGTCTACAAAGG 1635
||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1603 AAACGATTTCGAGGAAAAACTAATCGTTGGAGTAGGCGGGTTTGGTTCTGTCTACAAAGG 1662
Query 1636 ACGAATAGACGGTGGAGCCAC-ACTTGTTGCGGTTAAACGGCTGGAAATTACATCGAACC 1694
||||||||||||||||||||| | |||| || ||||||||||||||||||||||| ||||
Sbjct 1663 ACGAATAGACGGTGGAGCCACTA-TTGTCGCTGTTAAACGGCTGGAAATTACATCAAACC 1721
Query 1695 AAGGTGCTAAAGAGTTCGATACAGAGCTCGAGATGCTTTCAAAGCTTCGACATGTACACC 1754
||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |
Sbjct 1722 AAGGTGCTAAAGAGTTCGAAACAGAGCTTGAGATGCTCTCAAAGCTCCGACATGTACATC 1781
Query 1755 TCGTCTCTCTAATCGGATATTGCGATGACGACAACGAGATGGTACTTGTCTATGAGTATA 1814
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1782 TCGTCTCTCTAATCGGATACTGCGACGATGACAACGAGATGGTACTTGTCTATGAGTATA 1841
Query 1815 TGCCACATGGTACACTTAAAGATCATCTTTTCAGGAGAGACAAGGCCTCTGATCCTCCAT 1874
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 1842 TGCCACATGGTACACTTAAAGATCATCTTTTCAAGAGGGACAAGGCCTCTGATCCTCCTT 1901
Query 1875 TGTCATGGAAACGAAGGCTAGAGATTTGCATTGGAGCAGCTCGTGGATTACAGTATCTTC 1934
|||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1902 TGTCGTGGAAACGGAGGCTAGAGATTTGCATTGGAGCAGCTCGTGGACTACAGTATCTCC 1961
Query 1935 ATACTGGAGCCAAGTACACGATCATACATAGAGACATCAAAACCACAAACATACTTCTCG 1994
||||||| || ||| ||| |||||||||| |||||||||||||||||||||||||||| |
Sbjct 1962 ATACTGGCGCGAAGCACAGGATCATACATCGAGACATCAAAACCACAAACATACTTCTTG 2021
Query 1995 ATGAGAACTTCGTCGCTAAAGTATCTGACTTTGGTTTATCAAGAGTTGGTCCTACTAGTG 2054
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2022 ATGAGAACTTCGTAGCTAAAGTATCTGACTTTGGTTTATCAAGACTTGGTCCTACTAGTG 2081
Query 2055 CTTCTCAAACGCATGTCTCCACCGTCGTTAAAGGAACGTTTGGTTACTTGGATCCCGAGT 2114
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2082 CTTCTCAAACGCATGTCTCCACAGTCGTTAAAGGAACGTTTGGTTACTTGGATCCCGAGT 2141
Query 2115 ACTATCGCCGTCAAATCTTGACCGAAAAATCCGACGTGTACTCTTTTGGAGTTGTTCTGT 2174
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 2142 ACTATCGCCGTCAAATCTTGACGGAAAAATCTGACGTGTACTCCTTTGGAGTTGTTCTGT 2201
Query 2175 TGGAGGTTTTGTGCTGTAGACCGATCAGAATGCAAAGTGTTCCACCGGAACAAGCAGATT 2234
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2202 TGGAGGTTTTGTGCTGTAGACCGATCAAAATGCAAAGTGTTCCACCAGAACAAGCAGATT 2261
Query 2235 TGATCCGATGGGTGAAGTCAAATTTCAATAAAAG-AACCGTTGATCAGATCATTGACTCA 2293
|||| |||||||||||| |||||| ||| || || |||||||||||||||||||||||||
Sbjct 2262 TGATACGATGGGTGAAGACAAATTACAA-AAGAGGAACCGTTGATCAGATCATTGACTCA 2320
Query 2294 GATTTAACCGCTGATATCACTTCGACCTCGATGGAGAAGTTTTGTGAGATAGCCATTAGA 2353
|||||||||| ||||||||||||||| |||||||| ||||||||||| |||||| | |||
Sbjct 2321 GATTTAACCGATGATATCACTTCGACATCGATGGAAAAGTTTTGTGAAATAGCCGTGAGA 2380
Query 2354 TGTGTTCAAGACCGTGGTATGGAACGGCCACCGATGAACGACGTTGTTTGGGCGCTTGAG 2413
||||||| ||| || ||||| ||||||||| ||||||||||||| ||||||||||||| |
Sbjct 2381 TGTGTTCTAGATCGCGGTATCGAACGGCCATCGATGAACGACGTCGTTTGGGCGCTTGCG 2440
Query 2414 TTTGCTCTTCAGCTTCACGAGACTGCTAAGAAGAAGAATGACAACGTGGAGTCTCTGGAT 2473
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2441 TTTGCTCTTCAGCTTCACGAGACCGCTAAGAAGAAGAGTGACAACGTGGAGTCTCTGGAT 2500
Query 2474 CTAATGCCAAGTGGTGAAGTTGGTACGACCACGGACGGAGAAGATGACTTGTTTAGTAGG 2533
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2501 CTAATGCCAAGTGGTGAAGTTGGTACGACGACGGACGGAGAAGATGACTTGTTTAGTAGG 2560
Query 2534 ACTACAGGACACGTTGG-GAAATCGACCACGACCGATGACTCTGTTCTAGTTGTTGGTGA 2592
||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2561 ACTACAGGAGACGT-GGCGAAATCGACCACGACCGATGACTCTGTTCCAGTTGTTGGTGA 2619
Query 2593 TGAGAGGAGTGGTTCGAGTTGGGGAGTATTTTCGGAGATCAATGAACCTAAAGCACGGTA 2652
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2620 TGAGAGGAGTGGTTCGAGCTGGGGAGTATTTTCGGAGATCAATGAACCAAAAGCACGGTA 2679
Query 2653 GATTTGATGGCTTGGTAAACA 2673
|||||||||||||||||||||
Sbjct 2680 GATTTGATGGCTTGGTAAACA 2700
> Ahg891841 jgi|Araly1|891841|Al_scaffold_0007_3827
Length=1437
Score = 444 bits (240), Expect = 2e-123
Identities = 499/620 (80%), Gaps = 33/620 (5%)
Strand=Plus/Plus
Query 11 ATGATCTGTCACGTTTTAG-TAATTTTCACTATTCTCGTTTCCGCCGTCG-TCGACGCAA 68
||||||||| ||||||| | | ||| | || |||||||||| | || | || | |
Sbjct 1 ATGATCTGTTACGTTTT-GTTTCTTTCCTCTGTTCTCGTTTCTGTTACCGATGGA-GTTA 58
Query 69 CGGCGTCGTAT-GAGCCCACTGATGTCTTTCTCATCAATTGCGGCGATACCTCCAACAAC 127
|||| ||| | | |||||| ||||| |||||| |||| ||||| ||||| |||||||||
Sbjct 59 TGGCGGCGT-TCGTGCCCACCGATGTTTTTCTCTTCAACTGCGGTGATACTTCCAACAAC 117
Query 128 ATGGACTACAGTGGCCGGAACTGGACGACGGAG-A-ATCCGAAATTTATGTCATCGAATG 185
| ||| ||| ||||||||| ||||| | | || | ||| |||| || |||| || |||
Sbjct 118 GTCGACAACAATGGCCGGAATTGGAC-A-GCAGAAGATCGGAAAATTCTGTCGTCAAATT 175
Query 186 CAGTTGACGACGCGTCGTTCACTTCATCTGCGTCATACCAAGAATCAGGGA-TTCCTCAA 244
|| | | |||| |||| ||||||| || ||||||||| || || ||| || |||
Sbjct 176 TAG-T--CAACGCTTCGTACACTTCAGAAGCATCATACCAAAAAACA-GGAGTTTCTC-G 230
Query 245 G-TGCCGTACTTGAAAGCTAGGATTTTCCGATATGATTTCACTTACAGTTTTCCAGTCTC 303
| | |||||| |||||||| | || ||||||| ||| ||||||||||||||||||||| |
Sbjct 231 GATCCCGTACATGAAAGCTCGAATATTCCGATCTGAGTTCACTTACAGTTTTCCAGTCAC 290
Query 304 TCCCGGCTGGAAATTCCTCCGGTTATACTTTTATCCGACCCGTTACGGATCCGATTTCGA 363
||| ||||||||||||||||| ||||| ||||| ||||| | ||| ||||| ||| ||
Sbjct 291 TCCTGGCTGGAAATTCCTCCGTTTATATTTTTACCCGACTCAATACAAATCCGGTTTTGA 350
Query 364 CGCCGTTAAATCCTTCTTCTCCGTCAACGTCAACCGTTTCACTCTCTTGC-ATAACTTC- 421
||| ||||| || ||| |||||||||| |||| | ||||||||||||||| | ||||||
Sbjct 351 CGCTGTTAACTCTTTCGTCTCCGTCAAAGTCAGCGGTTTCACTCTCTTGCGA-AACTTCA 409
Query 422 A-G-TG---T-A----A-AAGCTTCCATACCGGAGTCAAGTTCTCTAATCAAAGAGTTTA 470
| | || | | | |||| |||||| | ||||||||||||||||||||||||||||
Sbjct 410 ACGCTGATATAACGGTACAAGCATCCATAACAGAGTCAAGTTCTCTAATCAAAGAGTTTA 469
Query 471 TCGTTCCGGTTAACCAAACTCTTG-ATCTCACGTTCACGCCCTCTCCGAATTCATTAGCT 529
|| |||||||| |||| ||| ||| ||||||| ||||| || ||| |||||| ||||||
Sbjct 470 TCATTCCGGTTTACCAGACT-TTGAATCTCACCTTCACACCGTCTGAGAATTCGTTAGCT 528
Query 530 TTCGTTAACGGAATCGAGATTATCTCCATGCCTGACCGGTTTTACTCAAAGGGAGGATTT 589
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 529 TTCGTTAACAGAGTCGAGATTGTCTCCATGCCTGACCGGTTTTACTCAAAGGGAGGATTT 588
Query 590 GACGACGTTGTAAGAAACGT 609
||||||||||||||||||||
Sbjct 589 GACGACGTTGTAAGAAACGT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105090985955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5