BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G39010.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947933 jgi|Araly1|947933|scaffold_704162.1                        534    2e-151


> Ahg947933 jgi|Araly1|947933|scaffold_704162.1
Length=550

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 450/521 (86%), Gaps = 37/521 (7%)
 Strand=Plus/Plus

Query  1    ATGATAAACTTGGAGAAAGAAGCCAAAGAGAAGCAGATCTTGATTCGTGACGGAAAAAGA  60
            ||||||||||||||| ||||||||||| ||||  ||  |  ||||||||| || ||||||
Sbjct  22   ATGATAAACTTGGAGCAAGAAGCCAAA-AGAA--AG--C-AGATTCGTGATGGCAAAAGA  75

Query  61   AAAATCGTTCATCACGTAAATACAACGCTACTCGTGAAGATTTATGAAGCATCCGCAATC  120
            ||||| | ||||||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct  76   AAAATTGATCATCACGTAAATACAACGTTACTCGTGAAGATTTTTGAAGCATTCGCAATC  135

Query  121  GATGACAGACATCTTTTTCTGAAACCTTACTATGGCCCACCTAACTACTATTTCATCAAG  180
            ||||||||| |||  | | ||||||||||||||||  ||  |||||||||||| ||||||
Sbjct  136  GATGACAGAGATC--TCT-TGAAACCTTACTATGG--CA-GTAACTACTATTTTATCAAG  189

Query  181  GCATGGTTAGACGACACCAAAGAATACGGAACATATGTGGT---A------AAAG---AC  228
            |||||||||||||| |||||| |||||||||||||||||||   |      ||||   ||
Sbjct  190  GCATGGTTAGACGATACCAAACAATACGGAACATATGTGGTAAAAGGTTTCAAAGACTAC  249

Query  229  TCTTTTAAGGTTAATCAACCACCACTGAAGATTCCTTTAAATTTTCCTGCACAATATCTT  288
            ||||||  ||||||||||  |  | |||||||||||||| ||||||||||||| ||||||
Sbjct  250  TCTTTTGCGGTTAATCAA-GA--AATGAAGATTCCTTTAGATTTTCCTGCACAGTATCTT  306

Query  289  TACGTAGAATTGCTTAAAGGAATGTCGTATAGAGATCCTGGAACATCCAACAGAACTGTT  348
            ||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct  307  TACATAGAATTGCTTAAAGGATTCTCGTATAGAGATCCTGGAACATCCAACGGAACTGTT  366

Query  349  GTGATGGGTCGTGCAAAGATTCGATTGTCTCCTCTGATGACCAGCTATAAGGAGAGACCG  408
            ||||||||||||||||||||||||||| |||||||  | ||||||||||| | | |   |
Sbjct  367  GTGATGGGTCGTGCAAAGATTCGATTGCCTCCTCT--T-ACCAGCTATAA-G-GTG---G  418

Query  409  ATCTCCGGTGGCATCGATCTCGTCGGTTTGAATAGTGATCAATGTGTCGTGAAAAAGGGT  468
             ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  419  -TCTCCGGTGACATCGATCTCGTCGGTTTGAATAGTGATCAATGTGTCGTGAAAAAGGGA  477

Query  469  TACCTAACATATGCTATGAAACTTCATAGGTCTG-CGGATT  508
             |||||| ||||||||||||| ||||||||| || || |||
Sbjct  478  AACCTAAAATATGCTATGAAAATTCATAGGTATGTCGCATT  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5