BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39020.1
Length=2442
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891841 jgi|Araly1|891841|Al_scaffold_0007_3827 937 0.0
Ahg947934 jgi|Araly1|947934|scaffold_704163.1 826 0.0
> Ahg891841 jgi|Araly1|891841|Al_scaffold_0007_3827
Length=1437
Score = 937 bits (507), Expect = 0.0
Identities = 660/734 (90%), Gaps = 10/734 (1%)
Strand=Plus/Plus
Query 668 TAAACGTCGGCGGACAAATAGTCAACGAGGTCGACGATTCAGGAATGTTCCGGCGGTGGC 727
||||||| |||||| |||| ||||| | || || ||||||||||||||||| ||||||
Sbjct 614 TAAACGTTGGCGGAAAAATGGTCAATAATGTGGATGATTCAGGAATGTTCCGAAGGTGGC 673
Query 728 TTTCTGATGATTCTTTTGGAAACTCTGGATCCATTGTGAATGTTCCGGGTGTAAAGATCA 787
|| | ||||||||||| ||||| || |||||||||||||||||||||| ||||||||||
Sbjct 674 TTCCGGATGATTCTTTCGGAAATTCAGGATCCATTGTGAATGTTCCGGATGTAAAGATC- 732
Query 788 AC-TACACGGAGAAGACTCCGGCGTATGTTGCGCCGTATGATGTGTATGCTACTAGTCGC 846
|| || |||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 733 ACATATACGGAGAAAACTCCGGCGTATGTTGCCCCATATGATGTGTACGCTACTAGTCGC 792
Query 847 TTAATGGGGAACTCCAGCAACTTGATGTTCAATCTAACGGGTATGTTCCTCACAGTTGAT 906
| |||||| |||||| ||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 793 TCAATGGGCTACTCCACCAATTTGATTTTCAACCTGACGGGTATGTTCCTCACAGTTGAT 852
Query 907 GCTGGGTATAACTACCTTGTGAGGCTACATTTCTGTGAGACTCTTCCACAAGTTACCAAA 966
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 853 GCCGGGTATAACTACCTCGTGAGGCTACATTTCTGTGAGACTCTTCCACAAGTGACTAAA 912
Query 967 GCAGGCCAACGTGTCTTCTCCATATTCGTCGAAGATAAGATGGCTAAGAAAGAGACGGAC 1026
|||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 913 CCAGGCCAACGCGTCTTCTCCATCTTCGTCAAAGATAAGATGGCTAAGAAAGAGACGGAC 972
Query 1027 GTGATTCGGTTGAGCGGTGGTCCTCGGATTCCAATGTATTTAGATTTCAGTGTGTATGTT 1086
||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 973 GTGGTACGGTTGAGTGGTGGTCCTCGGATTCCAATGTATTTAGATTTTAGTGTGTATGTT 1032
Query 1087 GGTTTCGAAAGTGGGATGATACAACCTGAGCTACGACTTGACTTGGTTCCTCTCAAGGAC 1146
||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||
Sbjct 1033 GGTTTCGAAAGTGGGATGAGGCAACCTGATCTACGACTTGACTTGCATGCTTTCAAGGAT 1092
Query 1147 ACTAATCAAACGTATTACGACGCTATTCTGAGTGGTGTGGAGATTCTCAAGCTGAATGAT 1206
||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1093 ACTAATCTAAC------CGACGCTATTCTGAGTGGTGTAGAGATTCTCAAGCTGAATGAT 1146
Query 1207 TCTGATGGTAATCTTGCAAGACCAAATCCAGAACTTCTAGTATCTACGGACTCAACACCA 1266
||||| ||||||||||| |||||||||||| ||||| ||| ||||| |||||||| ||||
Sbjct 1147 TCTGAAGGTAATCTTGCCAGACCAAATCCAAAACTTATAGAATCTAAGGACTCAAGACCA 1206
Query 1267 GATGATTCTAATGT-TACACCACCAATAAAAGGTAAGCCACATGTTTTGGTGATAATCCT 1325
| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 AACGATTCTGATGTAT-CACCACCAATAAAAGGTAAGCCACATGTTTTGGTGATAATCCT 1265
Query 1326 CATAGTCGTTGGTTCTGTAATTGGGCTAGCGACTTTCATTGTTATCATCATGTTGTTGAT 1385
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 CATAGCCGTTGGTTCTGTAATTGGGCTAGCGACTTTCATTGTTATCATCATGTTGTTGAT 1325
Query 1386 CCGTCAGATGAAGA 1399
||||| || |||||
Sbjct 1326 CCGTCGGAAGAAGA 1339
Score = 745 bits (403), Expect = 0.0
Identities = 548/618 (89%), Gaps = 10/618 (2%)
Strand=Plus/Plus
Query 1 ATGAACTGTAACGTTTTGTTTC-TTCTCTCTGTTCTCGTCTCTGTTACGGCTGGAGTTAC 59
|||| |||| |||||||||||| ||| |||||||||||| |||||||| | ||||||||
Sbjct 1 ATGATCTGTTACGTTTTGTTTCTTTC-CTCTGTTCTCGTTTCTGTTACCGATGGAGTTAT 59
Query 60 GGCGGCGTACCAT-CCTACCGATGTCTTTCTCTTCAACTGCGGCGATACTTCCAACAACG 118
|||||||| | | || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 60 GGCGGCGT-TCGTGCCCACCGATGTTTTTCTCTTCAACTGCGGTGATACTTCCAACAACG 118
Query 119 TCGACAACAGTGGCCGGAACTGGACGGTGGAAAG-TCGTCAAATTCTGTCGTCGAATTTA 177
||||||||| ||||||||| ||||| | | ||| ||| ||||||||||||| ||||||
Sbjct 119 TCGACAACAATGGCCGGAATTGGACAGCAG-AAGATCGGAAAATTCTGTCGTCAAATTTA 177
Query 178 GTCAACGCTTCATTCACTTCAGAAGCGTCATACCAAAAAGCAGGGGTCTCTCGGATTCCG 237
||||||||||| | |||||||||||| |||||||||||| |||| || |||||||| |||
Sbjct 178 GTCAACGCTTCGTACACTTCAGAAGCATCATACCAAAAAACAGGAGTTTCTCGGATCCCG 237
Query 238 TACATGAAAGCTCGAATATTCCGATCTGAGTTCACCTACAGTTTCCCAGTCACTCCCGGT 297
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 238 TACATGAAAGCTCGAATATTCCGATCTGAGTTCACTTACAGTTTTCCAGTCACTCCTGGC 297
Query 298 TCGATATTTCTCCGGTTATACTTTTACCCGACTCAGTACAAATCCGGTTTTGACGCGGTT 357
| || ||| ||||| ||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 298 TGGAAATTCCTCCGTTTATATTTTTACCCGACTCAATACAAATCCGGTTTTGACGCTGTT 357
Query 358 AACTCCTTCTTCTCCGTCAAAGTCAACGGTTTCACTCTCTTGCGAAACTTCAACGCTGAC 417
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 AACTCTTTCGTCTCCGTCAAAGTCAGCGGTTTCACTCTCTTGCGAAACTTCAACGCTGA- 416
Query 418 T-CAACGGTACAAGCTTCAAT-ACCGTTGTCAAATTCTCTAATCAAAGAGTTTATCATTC 475
| |||||||||||| || || || | ||||| ||||||||||||||||||||||||||
Sbjct 417 TATAACGGTACAAGCATCCATAACAG-AGTCAAGTTCTCTAATCAAAGAGTTTATCATTC 475
Query 476 CGGTTCACCAGACTCTGAATCTCACCTTCACTCCCTCCAAGAATTTGTTAGCTTTCGTTA 535
||||| |||||||| |||||||||||||||| || || |||||| ||||||||||||||
Sbjct 476 CGGTTTACCAGACTTTGAATCTCACCTTCACACCGTCTGAGAATTCGTTAGCTTTCGTTA 535
Query 536 ACGGAATCGAAATCGTCTCCATGCCTGACCGGTTTTACTCAAAGGGAGGATTTGACAACG 595
|| || |||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 536 ACAGAGTCGAGATTGTCTCCATGCCTGACCGGTTTTACTCAAAGGGAGGATTTGACGACG 595
Query 596 TTTTAAGAAACGTTAGTA 613
|| |||||||||| ||||
Sbjct 596 TTGTAAGAAACGTCAGTA 613
> Ahg947934 jgi|Araly1|947934|scaffold_704163.1
Length=2700
Score = 826 bits (447), Expect = 0.0
Identities = 984/1239 (79%), Gaps = 54/1239 (4%)
Strand=Plus/Plus
Query 58 ACGGCGGCGTACCATCCTACCGATGTCTTTCTCTTCAACTGCGGCGATACTTCCA-ACAA 116
|||||||||| | | || ||||||||||||||| ||||||||||||||| || || ||
Sbjct 92 ACGGCGGCGTTCGAGCCCACCGATGTCTTTCTCATCAACTGCGGCGATAATT-CAGCCAC 150
Query 117 CGTCGA-CAACAGTGGCCGGAAC-TGGACGGTGGAAAGTCGTCAAA-TTCTGTCGTCGAA 173
| || ||| || |||| |||| |||||| | | | || ||| |||| |||| ||
Sbjct 151 CAAAGACCAA-AGCGGCC-GAACATGGACGCCCG-AGGAGGTAAAAGCTCTGCCGTCAAA 207
Query 174 TTTAGTCAACGCTTCATTCACTTCAGAAGCGTCATACCAAAAAGCAGGGGTCT-CTCGGA 232
|| || | || || ||||||||||| |||| ||||||| | ||||| | | ||| |
Sbjct 208 TTCAGACTTTGCGTCCTTCACTTCAGACGCGTTATACCAAGACTCAGGGAT-TGCTC-AA 265
Query 233 -TTCCGTACATGAAAGCTCGAATATTCCGATCTGAGTTCACCTACAGTTTCCCAGTCACT 291
| ||||||||||||||||| || ||||||||| | || || |||||||| | |||| ||
Sbjct 266 GTGCCGTACATGAAAGCTCGGATTTTCCGATCTAACTTTACGTACAGTTTTCTAGTCTCT 325
Query 292 CCCGGTTCGATATTTCTCCGGTTATACTTTTACCCGACTCAG-TACAAATCCGGTTTTGA 350
||||| | || ||| ||||||||||||||||| ||||| | | ||| |||||||| ||
Sbjct 326 CCCGGCTGGAAATTCCTCCGGTTATACTTTTATCCGAC-CCGTTACGGTTCCGGTTTCGA 384
Query 351 CGCGGTTAACTCCTTCTT-CTCCGTCAAAGTCAACGGTTTCACTCTCTTGCGAAACTTCA 409
||| | || |||||||| || |||||| ||||| ||| |||||||||| |||||||||
Sbjct 385 CGCTGCTAGTTCCTTCTTCCT-CGTCAACGTCAATGGTATCACTCTCTTAAGAAACTTCA 443
Query 410 ACGCTGACTCAACGGTACAAGCTTCAATACCGTTGTCAAATTCTCTAATCAAAGAGTTTA 469
|||||| | ||||| | ||||||| ||||| |||||| ||||| |||||||| || |
Sbjct 444 GCGCTGATTTAACGGCAAAAGCTTCCTTACCGGAGTCAAAGTCTCTTATCAAAGAATTCA 503
Query 470 TCATTCCGGTTCACCAGACTCTGAATCTCACCTTCACTCCCTC-CAAGAATTTGTTAGCT 528
|| ||||||||||||||||||| |||||||| ||||| || || | | ||| ||| |||
Sbjct 504 TCGTTCCGGTTCACCAGACTCTCAATCTCACGTTCACACCGTCTC-GGGATTCGTTTGCT 562
Query 529 TTCGTTAACGGAATCGAAATCGTCTCCATGCCTGACCGGTTTTACTCAAAGGGAGGATTT 588
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 563 TTCGTTAACGGAATCGAGATTGTCTCCATGCCTGACCGGTTTTACTCAAAGGGAGGATTT 622
Query 589 GACAACGTTTTAAGAAACGTTAGTAGCGACGTTGACTTCCAGATAGACAACTCGACGGCT 648
|||||| | ||| |||||| | ||| | ||||||||| ||||||| ||||| ||||||
Sbjct 623 GACAACATGATAACAAACGTCGGCAGCAATGTTGACTTCGAGATAGATAACTCCACGGCT 682
Query 649 TTCGAGTCCGTTCACCGGTTAAACGTCGGCGGACAAATAGTCAACGAGGTCGACGATTCA 708
|||||| ||||| | ||| ||||||| || ||| || |||||| || |||| |||||||
Sbjct 683 TTCGAGACCGTTTATCGGGTAAACGTAGGTGGAGGAACAGTCAATGACGTCGGCGATTCA 742
Query 709 GGAATGTTCCGGCGGTGGCTTTCTGATGATTCTTTTGGA-AACTCTGGA-TCCATTGTGA 766
||||||||| |||||||||||||||||||| ||| ||| || || ||| || |||||||
Sbjct 743 GGAATGTTCAGGCGGTGGCTTTCTGATGATGATTT-GGATAATTCGGGAATC-ATTGTGA 800
Query 767 ATGTTCCGGGTGTAAAGATCAACTACACGGAGAAGACTCCGGCGTATGTTGCGCCGTATG 826
| |||| || || |||||||||||||| ||||| ||||||| ||||||||| ||| | |
Sbjct 801 ACATTCCAGGAGTCAAGATCAACTACACTGAGAAAACTCCGGGGTATGTTGCCCCGGAAG 860
Query 827 ATGTGTATGCTAC-TAGTCGCTTAATGGGGAAC-TCCA-G-C---AA-CTTGA---TG-- 873
||||||| || || | |||| |||||||||| | || | | || || || |
Sbjct 861 ATGTGTACGCCACGTC-TCGCCAAATGGGGAACCTACAAGACCCTAAACT-GAACCTTAA 918
Query 874 TT-CAATCTAACGGGTATGTTCCTCACAGTTGATGCTGGGTATAACTACCTTGTGAGGCT 932
|| |||||| ||| | | ||||| ||||| || || |||| ||||||||| ||||||||
Sbjct 919 TTTCAATCTGACGT-T-T-TTCCTTACAGTCGACGCCGGGTTTAACTACCTCGTGAGGCT 975
Query 933 ACATTTCTGTGAGACTCTTCCACAAGTTACCAA-AGCAGGCCAACGTGTCTTCTCCATAT 991
|||||||||||||||||| || ||||| | ||| | || |||||| ||||||||||| |
Sbjct 976 ACATTTCTGTGAGACTCTCCCGCAAGTGAACAATACCAA-CCAACGCGTCTTCTCCATCT 1034
Query 992 TCGTCGAAGATAAGATGGCTA--AGAAAGAGACGGACGTGATTCGGTTGAGCGGTGGTCC 1049
| || | | || ||||||||| ||| | | ||||||||||| | |||||||||||||
Sbjct 1035 TTGTGGGATATCAGATGGCTACCAGATAT-GT-GGACGTGATTCTGATGAGCGGTGGTCC 1092
Query 1050 TCGGATTCCAATGTATTTAGATTTCAGTGTGTATGTTGGTTTCGAAAGTGGGATGATACA 1109
||||| ||| |||||| ||||||||| |||| |||||||||| |||| |||| || ||
Sbjct 1093 TCGGAATCCCATGTATCTAGATTTCAATGTGAATGTTGGTTTTGAAAATGGGCCGAGAC- 1151
Query 1110 ACCTGAGCTACGACTTGACTTGGTTCCTCTCAAGGACACTAAT-CAAACGTATTACGACG 1168
| ||| ||||||||||| || |||| | | ||| ||| || || | ||||| ||
Sbjct 1152 -C-TGATCTACGACTTGATTTTCATCCTATGATGGATACTGATGCATCC-TATTATGAAA 1208
Query 1169 CTATTCTGAGTGGTGTGGAGATTCTCAAGCTGAATGATTCTGATGGTAATCTTGCAAGAC 1228
|| |||| | ||||||||||||||||||||||||||||||| | |||| ||| ||| |||
Sbjct 1209 CTCTTCTAAATGGTGTGGAGATTCTCAAGCTGAATGATTCTCAAGGTATTCTCGCAGGAC 1268
Query 1229 CAAATCCAGAA-CTTCTAGTATCTACGGACTCAACACCA 1266
| |||||| || | || | || | |||||||||||||||
Sbjct 1269 CTAATCCA-AATCCTCAATTACCAACGGACTCAACACCA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92026031920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5