BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39050.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1 2141 0.0
Ahg947925 jgi|Araly1|947925|scaffold_704154.1 845 0.0
Ahg494079 jgi|Araly1|494079|fgenesh2_kg.7__3512__AT5G39090.1 664 0.0
Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823 219 6e-56
> Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1
Length=1452
Score = 2141 bits (1159), Expect = 0.0
Identities = 1360/1458 (93%), Gaps = 10/1458 (1%)
Strand=Plus/Plus
Query 3 AACACATCATGGTGAACGAAGAAATGGAGTCATCACTTAAAGTCATCGACGTGGCACGAG 62
|||||||||| ||| | |||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 1 AACACATCATAATGACCAAAGAAATGGATTCATCACTTAAAATCATCGACGTGGCACAAG 60
Query 63 TCACACCATCAAACTCCGACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACC 122
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCTCCATCAAACTCTGACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACC 120
Query 123 TCCTCTGGTACAAACTTCACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAA 182
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TCCTCTGGTATAAACTTCACGCCGTCGAACGAGTCATCTTCTACAAACTCACTGACGCAA 180
Query 183 GTCGTCCTTTCTTTGACTCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCC 242
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 181 CTCGTCCTTTCTTCGACTCAGTCATCGTCCCCAACCTCAAAACCTCTCTCTCCTCCTCCC 240
Query 243 TCTCTCACTACCTCCCACTCGCCGGAAAACTCGTGTGGGAACCACTTGATCCCAAACCGA 302
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 241 TCTCTCACTACCTCCCACTCGCCGGAAAACTCGTCTGGGAACCACTTGATCCCAAACCAA 300
Query 303 AAATCGTCTACACCCCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACT 362
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 AAATCATCTACACCCCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGACT 360
Query 363 TCTCACGTTTAACCGGCAAAGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCG 422
||||||||||| ||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct 361 TCTCACGTTTATCCGGCAACGAACCATACCCCACCGCCGAGTTATACCCGTTAGTCCCCG 420
Query 423 AGTTACATGTCTCCGACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAA 482
||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 AGTTACAAGTTTCCGATGACTCAGCCTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAA 480
Query 483 ACCAAGGGTTTTGCATCAGCGTTAATGCACATCATGCCGTTTTAGATGGAAAAACGACAA 542
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 ACCAAGGGTTTTGCATCTGCGTTAACGCACATCATGCCGTTTTAGATGGAAAAACGACAA 540
Query 543 CCAACTTTCTCAAATCTTGGGCACGCACATGTAAAAACCAAGATTCTTTTCTACCGCAGG 602
||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||| | |
Sbjct 541 CCATGTTTCTCAAATCTTGGGCACACACATGTAAAAATCAAGATTCTTCTCTACCGGACG 600
Query 603 ATCTAATCCCAGTTTACGATCGTACGGTCATAAAAGATCCAATGGATTTAGATAC-AAAG 661
|||| |||||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 601 ATCTTATCCCAATTTACGATCGTACGGTCATAAAAGATCCAACGGATTTAGATACAAAAG 660
Query 662 ATCTTAAACGCTTGGCACAGAGTAGCCAAAGTGTTCACCGGTGGTAAAGAACCAGAAAAC 721
|||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 661 -TCTTAAACGCTTGGCACAAAGTAGGCAAAGTCTTCACCGGTGGTAAAGAACCAGAAAAC 719
Query 722 CCCAAGAGTTTAAAGCTTTTATGGTCGCCGG-AGATTGGTCCTGACGTTTTCCGATACAC 780
|| || ||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 720 CCTAAAAGTTTAAAGCTTTTATGGTCGCCGGAAG-TTGGTCCCGACGTTTTCCGATACAC 778
Query 781 TCTCAATCTCACTAGAGAAGATATCCAAAAGCTTCGAGAGAGACTCAAGAAAGAGTCTTC 840
||||||||| |||| |||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 779 TCTCAATCTTACTAAAGAAAATATCCAAAAGCTTAGAGAAAGACTCAAGAAAGAGTCTTC 838
Query 841 TTCTTCCTCTGTTTCCTCATCACCCAAAGAGCTTCGTTTATCAACGTTTGTGATTGTTTA 900
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 --C-TCCTCTGTTTCATCATCACCAAAAGAGCTTCGTTTATCAACGTTTGTGATTGTTTA 895
Query 901 CTCTTATGCTTTAACGTGTTTAATCAAAGCTCGAGGCGGTGATCCGAGTAGACCAGTCGG 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 896 CTCTTATGCTTTAACGTGTTTAATCAAAGCTCGAGGCGGTGATCCGAATAGACCAGTCGG 955
Query 961 GTACGGATTCGCTGTGGATTGTCGAAGCCTTATGGTTCCACCGGTTCCATCGAGTTATTT 1020
|||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 956 GTACGGATTCGCGGTGGATTGTCGAAGCCTTATGGTTCCACCAGTTCCTTCTAGTTATTT 1015
Query 1021 TGGTAATTGTGTATCTGCTTGTTTTAAAATGTCGT-TAACGGCAGAGACTTTTATGAGTG 1079
|||||||||||| |||||||||||||||||| | | ||| |||||||| |||||||||||
Sbjct 1016 TGGTAATTGTGTCTCTGCTTGTTTTAAAATGCC-TATAAAGGCAGAGAGTTTTATGAGTG 1074
Query 1080 AAGAAGGGTTTTTAGCTGCTGCGAGAATGGTTAGTGATTCTGTTGAGGCATTGGATGAGA 1139
||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 1075 AAGAAGGATTTTTAGCTGCTGCAAGATTGGTTAGTGATTCGGTTGAGGCATTGGATGAGA 1134
Query 1140 ATGTTGCATTGAAGATTCCAGAGATTTTGGAAGGGTTTACGACTCTTTCACCAGGAACAC 1199
|||| |||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1135 ATGTAGCATGGAAGATTCCAGAGCTTTTGGAAGGGTTTACGACTCTTCCACCAGGAGCAC 1194
Query 1200 AGGTTTTGTCTGTTGCCGGGTCGACCCGGTTCGGAGTTTACGGGTTGGATTTTGGGTGGG 1259
| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 1195 AAGTTTTGTCTGTTGCCGGGTCGACCCGGTTTGGAGTATACGGGTTGGATTTCGGGTGGG 1254
Query 1260 GTAGACCGGAGAAAGTGGTGGTTGTGTCAATTGACCAAGGTGAAGCGATTTCTTTTGCGG 1319
|||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 1255 GTAGACCGGAGAAAGTGGTGGTTGTGTCGATTGATCAAGGTGAAGCGATTTCTATTGCGG 1314
Query 1320 AGAGTAGAGATGGGAGTGGTGGTGTAGAGCTTGGCTTCTCCCTCAAGAAACATGAAATGG 1379
||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1315 AGAGTAGAGATGGGAATGGTGGTGTAGAGATTGGCTTCTCGCTCAAGAAACATGAAATGG 1374
Query 1380 ATGTTCTTGTTGATTTGCTTCACAAGGGACTAGAAAATTAAATCAt-ttttttCTTTCTT 1438
||||||||||||| |||||||| || |||||||||||||||||||| ||||||| |||||
Sbjct 1375 ATGTTCTTGTTGAGTTGCTTCATAAAGGACTAGAAAATTAAATCATATTTTTTCCTTCTT 1434
Query 1439 CAGAAGAGTAAAATAATA 1456
|| |||||||||||||||
Sbjct 1435 CATAAGAGTAAAATAATA 1452
> Ahg947925 jgi|Araly1|947925|scaffold_704154.1
Length=1411
Score = 845 bits (457), Expect = 0.0
Identities = 708/827 (86%), Gaps = 26/827 (3%)
Strand=Plus/Plus
Query 21 AAGAAATGGAGTCATCACTTAA-AGTCATCGACGTGGCACGAGTCACACCATCAAACTCC 79
||||||||| ||||||||||| | |||||||||| ||||||||||| || ||||||||
Sbjct 16 AAGAAATGGTTTCATCACTTAACA-TCATCGACGTTGCACGAGTCACCCCTTCAAACTCT 74
Query 80 GACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGGTACAA-ACT 138
|| ||| |||| ||||||||||||||||| |||||||||||||||||||||| ||| | |
Sbjct 75 GAATCGACCGACTCACTCACTCTCCCACTAACCTTCTTCGACCTCCTCTGGTTCAAGA-T 133
Query 139 TCACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTC-CTTTCTTTG 197
||||||||| ||||||||||||||||||| ||||| |||||||| | | | |||||||||
Sbjct 134 TCACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTG-CTCTTTCTTTG 192
Query 198 ACTCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCCTCTCTCACTACCTCC 257
|||||||||||||||| || |||||||| |||||||||| ||||||||||||||| ||||
Sbjct 193 ACTCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCACTATCTCC 252
Query 258 CACTCGCCGGAAAACTCGTGTGGGAACCACTTGATCCCAAACCGAA-AATCGTCTACACC 316
||||||||||||||||||| ||| ||||| |||| |||||||| || || || ||||||
Sbjct 253 CACTCGCCGGAAAACTCGTCTGGAAACCATTTGAACCCAAACC-AAGCATTGTATACACC 311
Query 317 CCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACC 376
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 312 CCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCCGCTTAACC 371
Query 377 GGCAA-AGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCGAGTTACATGTCTC 435
|| || |||||| ||| || ||| |||||| |||| ||||||||||||||||| |||
Sbjct 372 GG-AATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTC 430
Query 436 CGACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTG 495
||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 431 CGACGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTG 490
Query 496 CATCAGCGTTAAT-GCACATCATGCCGTTT-TAGATGGAAAAACGACAACCAACTTT-CT 552
|||| |||| || ||||| |||||||||| | ||||| ||||||||||||| |||| ||
Sbjct 491 CATCGGCGT-AACCGCACACCATGCCGTTTCT-GATGGGAAAACGACAACCA-CTTTTCT 547
Query 553 CAAATCTTGGGCACGCA-CATGTAAAAACCAAGATTCTTTTCTACCGCAGGATCTAATCC 611
|||||||||||| | | | |||||| |||||||||||| ||||||| ||||||| || |
Sbjct 548 CAAATCTTGGGCTCACTTC-TGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGATTC 606
Query 612 CAGTTT-ACGATCGTACGGTCATAAAAGATCCAATGGATT-TAGATACAAAGA-TCTTAA 668
| |||| |||||||||||||||||||| ||||| | || | |||| ||| | | || |
Sbjct 607 C-GTTTTACGATCGTACGGTCATAAAAAATCCACCGAATAGT-GATATAAA-ACTTTTGA 663
Query 669 ACGCTTGGCACAGAGTAGCCAAAGTGTTCACCGGTGGTAAAGAACCAGAAAACCCCAAGA 728
|| | |||||| |||||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct 664 ACTCATGGCACTCTTTAGCCAAAATGTTCTCCGGCGGTAAAGAACCACAAAACCCCAAGA 723
Query 729 GTTTAAAGCTTT-TATGGTCGCCGGAGATTGGTCCTGACGTTTTCCGATACACTCTCAAT 787
|||| |||||| | ||||||| ||||| ||||||||| || ||||||||||| |
Sbjct 724 GTTTGAAGCTTCCTCCA-TCGCCGGTGATTGATCCTGACGTCTTACGATACACTCTTGAG 782
Query 788 CTCACTAGAGAAGATATCCAAAAGCTTCGAGAGAGACTCAAGAAAGA 834
|| ||| | ||||||||||||| |||||||||||||||||||| |||
Sbjct 783 CTAACTCGCGAAGATATCCAAATGCTTCGAGAGAGACTCAAGAGAGA 829
> Ahg494079 jgi|Araly1|494079|fgenesh2_kg.7__3512__AT5G39090.1
Length=1354
Score = 664 bits (359), Expect = 0.0
Identities = 568/667 (85%), Gaps = 22/667 (3%)
Strand=Plus/Plus
Query 24 AAATGGAGT-CATCACTTAAA-GTCATCGACGTGGCACGAGTCACACCATCAAACTCCGA 81
|||| |||| |||||| |||| | ||| ||||| ||||||||||||| || ||||| |
Sbjct 5 AAAT-GAGTCCATCAC-TAAACATGATCCACGTGTCACGAGTCACACCTTCCAACTCTAA 62
Query 82 CTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGG-TACAAACTTC 140
||||||||||||||| |||||||| ||||||||||| ||||| || ||| | ||||| |
Sbjct 63 CTCGTCCGAGTCACTTACTCTCCCGCTCACCTTCTTTGACCTTCTATGGCT-CAAAC-AC 120
Query 141 -ACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTCCTTTCTTTGAC 199
| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 121 AAAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAACTCGTCCTTTCTTCGAA 180
Query 200 TCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCCTCTCTCACTACCTCCCA 259
| |||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 181 TTAGTCATCGTCCCCAACCTCAAATCCTCTCTCTCCTCATCCCTCTCTCACTATCTCCCA 240
Query 260 CTCGCCGGA-AAACTCGTGTGGGAACCACTTGATCCCAAACCGAAA-ATCGTCTACACCC 317
|||||||| ||| || | ||||| |||||||||| ||||| ||| ||||||||| | |
Sbjct 241 CTCGCCGGCCAAA-TCCTCTGGGAGTCACTTGATCCAAAACC-AAACATCGTCTACTCAC 298
Query 318 CAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACCG 377
||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||||| |
Sbjct 299 CAAACGATACCGTTTCATTCACCGTCGCCGAGTCCAACGCCGATTTCTCTCGTTTAACAG 358
Query 378 GCAAAGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCGAGTTACATGTCTCCG 437
|||||||||| ||| || ||| |||||| |||| ||||||||||||||||| |||||
Sbjct 359 GCAAAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCG 418
Query 438 ACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCA 497
||||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 ACGACTCGGCTTCCGTCATGTCGTTTCAAGTCACATTATTTCCAAACCAAGGGTTTTGCA 478
Query 498 TCAGCGTTAATGCACATCATGCCGTTTTAGATGGAAAAACGACAACCAACTTT-CTCAAA 556
|| | || | ||||| |||||||||| |||||||||||||| |||| |||| ||||||
Sbjct 479 TCGGTGTCACCGCACACCATGCCGTTTCCGATGGAAAAACGACGACCA-CTTTTCTCAAA 537
Query 557 TCTTGGGCACGCACATGTAAAAACCAAGATTCTTTTCTACCGCAGGATCTAATCCCAGTT 616
|||||||| | | ||||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 538 TCTTGGGCTCACTTATGTAAACATCAAGATTCTTCTCTACCGGAGGATCTAATCCC-GTT 596
Query 617 -TACGATCGTACGGTCATAAAAGATCCAATGGAT-TTAGATAC-AAAGATCTT-AAACGC 672
||||||||||||||||| |||| |||| ||| || ||||| |||| |||| |||
Sbjct 597 CTACGATCGTACGGTCATTAAAGGTCCACCGGAGATT-GATACTAAAG-TCTTGAAAAT- 653
Query 673 TTGGCAC 679
|||||||
Sbjct 654 TTGGCAC 660
> Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823
Length=1254
Score = 219 bits (118), Expect = 6e-56
Identities = 163/185 (88%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 26 ATGGAGTCATCACTTAA-AGTCATCGACGTGGCACGAGTCACACCATCAAACTCCGACTC 84
||||| ||||||||||| | ||||||||||||||| |||||| || |||||||| |||||
Sbjct 1 ATGGATTCATCACTTAACA-TCATCGACGTGGCACAAGTCACTCCTTCAAACTCTGACTC 59
Query 85 GTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGGTACAAACTTCACGC 144
| | ||||||||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct 60 GGCGGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTTATTTATTTCAAACTTCGCGC 119
Query 145 CGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTCCTTTCTTTGACTCAGT 204
|||||||||||||||||||||| |||||| ||||||| ||| |||||||| ||||||||
Sbjct 120 TGTCGAACGAGTCATCTTCTACAGACTCACTGACGCAACTCGCCCTTTCTTCGACTCAGT 179
Query 205 CATCG 209
|||||
Sbjct 180 CATCG 184
Score = 200 bits (108), Expect = 2e-50
Identities = 164/190 (86%), Gaps = 8/190 (4%)
Strand=Plus/Plus
Query 281 GAACCACTTGATCCCAAACCGAA-AATCGTCTACACCCCAAACGACGCCGTTTCATTCAC 339
||||| ||||||| |||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 184 GAACCTCTTGATCTCAAACC-AAGCATCGTCTATTCCCAAAACGACGCCGTTTCATTCAC 242
Query 340 CGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACCGGCAA-AGAACCGTTCCCCACCA 398
||||||||| ||||||| || ||||| |||||| ||||||| | |||| |||||| |||
Sbjct 243 TGTCGCCGAGACAAACGCTGAGTTCTCTCGTTTATCCGGCAACA-AACCATTCCCCTCCA 301
Query 399 CCGAGTTATACCCGTTAGTCCCCGAGTTAC--ATGTCTCCGACGACTCAGCTTCCGCCGT 456
|||||||||||||||||||||||||||||| | | ||||||||||||||| |||| ||
Sbjct 302 CCGAGTTATACCCGTTAGTCCCCGAGTTACTCA-G-CTCCGACGACTCAGCCTCCGTTGT 359
Query 457 GTCGTTTCAA 466
|||||| |||
Sbjct 360 GTCGTTCCAA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5