BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39080.1 Length=1504 Score E Sequences producing significant alignments: (Bits) Value Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823 1125 0.0 Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1 989 0.0 Ahg947925 jgi|Araly1|947925|scaffold_704154.1 776 0.0 > Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823 Length=1254 Score = 1125 bits (609), Expect = 0.0 Identities = 797/887 (90%), Gaps = 15/887 (2%) Strand=Plus/Plus Query 526 ATGGAAAAACGACAACCATGTTTCTCAAATCCTGGGCTCACAT-ATG-TAAACATCAAGA 583 ||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||| Sbjct 370 ATGGAAAAACGACAACCATGTTTCTCAAATCTTGGGCACAC-TCATGTTAAACATCAAGA 428 Query 584 TTTTTCTCTACCGCAGGATTTAATCCCAACTTACGATCGTACGGTCATTAAAAGTCCAAC 643 || |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct 429 TTCTTCTCTACCGCAGGATTTAATCCCAAATTACAATCGTACGGTCATAAAAAGTCCAAC 488 Query 644 GGATAGTGAAAACAAAGTTTTGAATGAGTGGCGCTCTTTCA-CCAAAATATTAGCTGGTG 702 |||||||||||||||||| ||||||||||||| |||||| | ||||||| ||||| |||| Sbjct 489 GGATAGTGAAAACAAAGTGTTGAATGAGTGGCACTCTTT-AGCCAAAATGTTAGCGGGTG 547 Query 703 GTAAAGAACCTGCCAACCCCAAGAGTTTAAAGCTTAATCCATCATTTGAGATTGGTCCTG 762 |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 548 GTAAAGAACCTGAGAACCCCAAGAGTTTAAAGCTTAAACCGTCATTTGAGATTGGTCCTG 607 Query 763 ACGTTGTCCGATACACTCTCCAGCTCACGCGTGAAGATATCCAAACGCTTCGCGAGAGAC 822 |||||||||| ||||||||| ||||||| |||||||||||||||||| ||| |||||||| Sbjct 608 ACGTTGTCCGGTACACTCTCGAGCTCACTCGTGAAGATATCCAAACGTTTCACGAGAGAC 667 Query 823 TTAAGAGAGAAGTTtcctcctcctcctcctcaacctcatcctcAAAAGAGCTTCGCTTGT 882 ||||||||||| ||| | || ||||||||| ||||| ||||||| || |||||||||| Sbjct 668 TTAAGAGAGAA-TTT--T-CT--TCCTCCTCACCCTCACCCTCAAAGGACCTTCGCTTGT 721 Query 883 CTACATTTGTTATTGTTTACTCGTATGTATTAGTATGCATAATAAGAGCTCGAGGCGGGG 942 |||||||||||||||||||||| || | ||||| ||| ||||||||||||||||||| | Sbjct 722 CTACATTTGTTATTGTTTACTCATACGCGTTAGTGTGCTTAATAAGAGCTCGAGGCGGAG 781 Query 943 AACC-ACATAGACCGGTTGGATATGCGTTTTCGGTGGATTGTCGAAGCCTCATGAATCCG 1001 |||| | ||||||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 782 AACCGA-ATAGACCGGTTGGATATGCATTTTCGGTAGATTGTCGAAGCCTCATCAATCCA 840 Query 1002 CCGACTCCAAATTATTTTGGAAATTGCATCGCTGGTTGCTCT-AGAATGATGCTGACGGC 1060 || || |||| ||||||||||||||| ||| ||||||||| | ||||||||| ||| ||| Sbjct 841 CCCACCCCAAGTTATTTTGGAAATTGTATCTCTGGTTGCT-TGAGAATGATGTTGAAGGC 899 Query 1061 AAAAATGTTTATGGGTGAAGAAGGACTTTTGGCTGCTGCGACAATGGTCAGCGATTCGAT 1120 ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 900 AAAAACGTTTATGGGTGAAGAAGGGCTTTTGGCTGCTGCGAAAATGGTCAGCGATTCGAT 959 Query 1121 CGAAGAATGGGACGAGAGTTTTGCGTGGAAGATTCCGGATTTTGTAGCATATGCAACTCT 1180 ||| ||||||||||||||||| || ||||||||| ||||||| |||||| ||||||||| Sbjct 960 CGAGGAATGGGACGAGAGTTTGGCATGGAAGATTTCGGATTTCCTAGCATTTGCAACTCT 1019 Query 1181 TCCACCAGAGACACAACTTATTTTAGTTTCAGGGTCTAACCGATTTGGAGTATACGAGTT 1240 |||||||| ||||||| ||||||||| ||| |||||| ||||||||||||||||| ||| Sbjct 1020 TCCACCAGGGACACAAATTATTTTAGCTTCCTGGTCTACCCGATTTGGAGTATACGGGTT 1079 Query 1241 GGATTTTGGGTGGGGTAGACCTGATAAAGTGATGGTTGTGTCGATCAGTCCAGGCAATGG 1300 ||||||||| ||||| ||||| ||||||||| || ||||||||||||||| ||||||||| Sbjct 1080 GGATTTTGGATGGGGCAGACCGGATAAAGTGGTGATTGTGTCGATCAGTCAAGGCAATGG 1139 Query 1301 GATTTCCATGGCGGAAAGTAGAGACCAAAACGGCAGTGTGGAGATTGGCTTCTCACTCAA 1360 |||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1140 GATTTCCATGGCTGATAGTAGAGACCAAATCGGCGGTGTGGAGATTGGCTTCTCACTCAA 1199 Query 1361 GAAGCACGAAATGGACACATTGATTGATTTGCTTCATTGTGAACTAA 1407 ||| || |||||||||||| ||||||||||||| || | ||| |||| Sbjct 1200 GAAACAAGAAATGGACACACTGATTGATTTGCTCCAATATGATCTAA 1246 > Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1 Length=1452 Score = 989 bits (535), Expect = 0.0 Identities = 1131/1412 (80%), Gaps = 68/1412 (5%) Strand=Plus/Plus Query 20 AGAAATGGTTTCATCACTTAACATCATCGAAGTGGCACGAGTCACC-CCTTCAAACTCTG 78 |||||||| |||||||||||| |||||||| ||||||| |||| || || |||||||||| Sbjct 20 AGAAATGGATTCATCACTTAAAATCATCGACGTGGCACAAGTC-CCTCCATCAAACTCTG 78 Query 79 ACTCGGCCGAGTCACTCAGTCTCCCACTCA-CTTATTTCGACCTTATCTATTATAAACTT 137 ||||| |||||||||||| ||||||||||| ||| |||||||| ||| ||||||||| Sbjct 79 ACTCGTCCGAGTCACTCACTCTCCCACTCACCTT-CTTCGACCTCCTCTGGTATAAACTT 137 Query 138 CGCGCCGTCGAACGAGTCATCTTCTACCGAA-TCACCAACGTAACTCGCCCTTTCTTTGA 196 | |||||||||||||||||||||||| | || |||| ||| |||||| |||||||| || Sbjct 138 CACGCCGTCGAACGAGTCATCTTCTA-CAAACTCACTGACGCAACTCGTCCTTTCTTCGA 196 Query 197 CTCAGTCATCGTCCCAAATCTCAAAACCTCTCTATCCTCATGCCTCTCTCACTATCTCCC 256 ||||||||||||||| || |||||||||||||| ||||| | |||||||||||| ||||| Sbjct 197 CTCAGTCATCGTCCCCAACCTCAAAACCTCTCTCTCCTCCTCCCTCTCTCACTACCTCCC 256 Query 257 ACTCGCTGGCAAACTTATATGGGAACCACTTGATCACAAACCAACCATTGTCTACTCCCA 316 |||||| || ||||| | |||||||||||||||| |||||||| || ||||| ||| Sbjct 257 ACTCGCCGGAAAACTCGTCTGGGAACCACTTGATCCCAAACCAAAAATCATCTACACCCC 316 Query 317 AAACGACGACGTTTCATTCAGCGTCGCCGAAACAAACGCTGATTTCTCTA-GTTTATCCG 375 |||||||| ||||||||||| ||||||||| ||||||| || ||||| | ||||||||| Sbjct 317 AAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGACTTCTC-ACGTTTATCCG 375 Query 376 GCAATGAACCATTCCCCTCCACCGAGTTGTACCCGTTAGTCCCCGCGTTACAAAG-CTCC 434 |||| ||||||| |||| || ||||||| |||||||||||||||| ||||| ||| ||| Sbjct 376 GCAACGAACCATACCCCACCGCCGAGTTATACCCGTTAGTCCCCGAGTTAC-AAGTTTCC 434 Query 435 GACGACTCGGCCTCCATTGTGTCGTTCCAAGTCACGTTATTTCCAAACCAAGGATTTTGC 494 || ||||| |||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct 435 GATGACTCAGCCTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGC 494 Query 495 ATCGGCG-TAAGTGCACATCATGCCGTTTTAGATGGAAAAACGACAACCATGTTTCTCAA 553 ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 ATCTGCGTTAA-CGCACATCATGCCGTTTTAGATGGAAAAACGACAACCATGTTTCTCAA 553 Query 554 ATCCTGGGCTCACATATGTAAACATCAAGATTTTTCTCTACCGCAGGAT-TTAATCCCAA 612 ||| ||||| |||| ||||||| ||||||||| |||||||||| | ||| ||| |||||| Sbjct 554 ATCTTGGGCACACACATGTAAAAATCAAGATTCTTCTCTACCGGACGATCTTA-TCCCAA 612 Query 613 CTTACGATCGTACGGTCATTAAAAG-TCCAACGGATAGT-GAAAACAAA-GTTTTGAATG 669 |||||||||||||||||| ||||| |||||||||| | || | |||| || || || | Sbjct 613 TTTACGATCGTACGGTCAT-AAAAGATCCAACGGATT-TAGATA-CAAAAGTCTTAAACG 669 Query 670 AGTGGCGCTCTTTCAC-CAAAATATT-AGCTGGTGGTAAAGAACCTGCCAACCCCAAGAG 727 |||| | | | |||| | || | | |||||||||||||| | ||||| || || Sbjct 670 CTTGGCACAAAGT-AGGCAAAGTCTTCACC-GGTGGTAAAGAACCAGAAAACCCTAAAAG 727 Query 728 TTTAAAGCTTA-ATCCATCATTTGA-GATTGGTCCTGACGTTGTCCGATACACTCTCCAG 785 |||||||||| || || || | ||||||| |||||| |||||||||||||| | Sbjct 728 TTTAAAGCTTTTATGG-TCGCCGGAAG-TTGGTCCCGACGTTTTCCGATACACTCTCAAT 785 Query 786 CTCACGCGTGAAGATATCCAAACGCTTCGCGAGAGACTTAAGAGAGAAGT-Ttcctcctc 844 || || ||| ||||||||| |||| | || ||||| |||| ||| || ||||||||| Sbjct 786 CTTACTAAAGAAAATATCCAAAAGCTTAGAGAAAGACTCAAGAAAGA-GTCTTCCTCCTC 844 Query 845 ctcctcctcaacctcatcctcAAAAGAGCTTCGCTTGTCTACATTTGTTATTGTTTACTC 904 | | ||| | ||| || |||||||||||| || || || ||||| ||||||||||| Sbjct 845 -TGTT--TCATCATCA-CC--AAAAGAGCTTCGTTTATCAACGTTTGTGATTGTTTACTC 898 Query 905 GTATG-TATTAGTATGCATAAT-AAGAGCTCGAGGCGGGGAACC-ACATAGACCGGTTGG 961 |||| | ||| || |||| || |||||||||||| || || | ||||||| || || Sbjct 899 TTATGCT-TTAACGTGTTTAATCAA-AGCTCGAGGCGGTGATCCGA-ATAGACCAGTCGG 955 Query 962 ATATGCGTTTT-CGGTGGATTGTCGAAGCCTCATGAATCCGCC-GA-C-TCCAAATTATT 1017 || | | || ||||||||||||||||||| ||| ||| || | | | | | ||||| Sbjct 956 GTACG-GATTCGCGGTGGATTGTCGAAGCCTTATGGTTCCACCAGTTCCTTCTAGTTATT 1014 Query 1018 TTGGAAATTGCATCGCTGGTTGCTCTAGAATGA-TGCTGACGGCAAAAATGTTT-ATGGG 1075 |||| ||||| || ||| ||| | || |||| | | | |||| | | |||| ||| | Sbjct 1015 TTGGTAATTGTGTCTCTGCTTGTTTTAAAATGCCTA-TAAAGGCAGAGA-GTTTTATGAG 1072 Query 1076 TGAAGAAGGACTTTTGGCTGCTGCGACAATGGTCAGCGATTCGATCGAAGAATGGGACGA 1135 |||||||||| |||| |||||||| | | |||| || |||||| | || | || ||| || Sbjct 1073 TGAAGAAGGATTTTTAGCTGCTGCAAGATTGGTTAGTGATTCGGTTGAGGCATTGGATGA 1132 Query 1136 GAGTTTTGCGTGGAAGATTCCGGA--TTTTGTA-GCATATGCAACTCTTCCACCAG-AGA 1191 || | | || ||||||||||| || ||||| | | | | | ||||||||||||| || Sbjct 1133 GAATGTAGCATGGAAGATTCCAGAGCTTTTGGAAGGGTTTACGACTCTTCCACCAGGAG- 1191 Query 1192 CACAACTTATT-T-TAGTTTCAGGGTCTAACCGATTTGGAGTATACGAGTTGGATTTTGG 1249 ||||| || || | | ||| | ||||| | ||| ||||||||||||| ||||||||| || Sbjct 1192 CACAAGTT-TTGTCT-GTTGCCGGGTCGACCCGGTTTGGAGTATACGGGTTGGATTTCGG 1249 Query 1250 GTGGGGTAGACCTGATAAAGTGATGGTTGTGTCGATC-AGTCCAGGC-AATGGGATTTCC 1307 |||||||||||| || |||||| ||||||||||||| | || ||| || | |||||| Sbjct 1250 GTGGGGTAGACCGGAGAAAGTGGTGGTTGTGTCGATTGA-TCAAGGTGAA-GCGATTTCT 1307 Query 1308 ATGGCGGAAAGTAGAGACCAAAACGGCAGTGTGGAGATTGGCTTCTCACTCAAGAAGCAC 1367 || ||||| |||||||| || || |||| |||||||||||||| |||||||| || Sbjct 1308 ATTGCGGAGAGTAGAGATGGGAATGGTGGTGTAGAGATTGGCTTCTCGCTCAAGAAACAT 1367 Query 1368 GAAATGGACA--CATTGATTGATTTGCTTCAT 1397 |||||||| | ||| |||| ||||||||| Sbjct 1368 GAAATGGATGTTC-TTG-TTGAGTTGCTTCAT 1397 > Ahg947925 jgi|Araly1|947925|scaffold_704154.1 Length=1411 Score = 776 bits (420), Expect = 0.0 Identities = 693/824 (84%), Gaps = 22/824 (3%) Strand=Plus/Plus Query 20 AGAAATGGTTTCATCACTTAACATCATCGAAGTGGCACGAGTCACCCCTTCAAACTCTGA 79 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 17 AGAAATGGTTTCATCACTTAACATCATCGACGTTGCACGAGTCACCCCTTCAAACTCTGA 76 Query 80 CTCGGCCGAGTCACTCAGTCTCCCACTCAC-TTATTTCGACCTTATCTA-TTATAA-ACT 136 ||| |||| ||||||| ||||||||| || || || |||||| ||| || || | | Sbjct 77 ATCGACCGACTCACTCACTCTCCCACTAACCTTCTT-CGACCTCCTCTGGTTC-AAGA-T 133 Query 137 TCGCGCCGTCGAACGAGTCATCTTCTACCGAATCACCAACGTAACTCGCCCTTTCTTTGA 196 || |||||| |||||||||||||||||| || ||| | ||| |||| || |||||||||| Sbjct 134 TCACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTGCTCTTTCTTTGA 193 Query 197 CTCAGTCATCGTCCCAAATCTCAAAACCTCTCTATCCTCATGCCTCTCTCACTATCTCCC 256 ||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||| Sbjct 194 CTCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCACTATCTCCC 253 Query 257 ACTCGCTGGCAAACTTATATGGGAACCACTTGATCACAAACCAACCATTGTCTACTCCCA 316 |||||| || ||||| | ||| ||||| |||| | |||||||| |||||| ||| ||| Sbjct 254 ACTCGCCGGAAAACTCGTCTGGAAACCATTTGAACCCAAACCAAGCATTGTATACACCCC 313 Query 317 AAACGACGACGTTTCATTCAGCGTCGCCGAAACAAACGCTGATTTCTCTAGTTTATCCGG 376 |||||||| ||||||||||| ||||||||| ||||||| |||||||| | ||| |||| Sbjct 314 AAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCCGCTTAACCGG 373 Query 377 CAAT-GAACCATTCCCCTCCACCGAGTTGTACCCGTTAGTCCCCGCGTTACAAAGCTCCG 435 ||| ||||||||| |||||| ||||||| |||| |||||||||| |||||||| ||||| Sbjct 374 -AATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCG 432 Query 436 ACGACTCGGCCTCCATTGTGTCGTTCCAAGTCACGTTATTTCCAAACCAAGGATTTTGCA 495 |||||||||| ||| | |||| || |||||||||||||||||||||||||| ||||||| Sbjct 433 ACGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCA 492 Query 496 TCGGCGTAAGTGCACATCATGCCGTTT-TAGATGGAAAAACGACAACCA-TGTTTCTCAA 553 ||||||||| ||||| |||||||||| | ||||| ||||||||||||| | |||||||| Sbjct 493 TCGGCGTAACCGCACACCATGCCGTTTCT-GATGGGAAAACGACAACCACT-TTTCTCAA 550 Query 554 ATCCTGGGCTCACATATGTAAACATCAAGATTTTTCTCTACCGCAGGATTTAATCCCAAC 613 ||| ||||||||| | |||||||| ||||||| |||||||||| ||||| | || || Sbjct 551 ATCTTGGGCTCACTTCTGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGATTCCGTT 610 Query 614 TTACGATCGTACGGTCATTAAAAGTCCAACGGATAGTGAAA-ACAAAGTTTTGAA-TGAG 671 |||||||||||||||||| |||| |||| || ||||||| | | ||| ||||||| | | Sbjct 611 TTACGATCGTACGGTCATAAAAAATCCACCGAATAGTGATATA-AAACTTTTGAACTCA- 668 Query 672 TGGCGCTCTTTCA-CCAAAATATTAGCTGGTGGTAAAGAACCTGCCAA-CCCCAAGAGTT 729 |||| |||||| | ||||||| || | || ||||||||||| | || ||||||||||| Sbjct 669 TGGCACTCTTT-AGCCAAAATGTTCTCCGGCGGTAAAGAACCA-CAAAACCCCAAGAGTT 726 Query 730 TAAAGCTTAATCCATCATTTGAGATTGGTCCTGACGT-TGTCCGATACACTCTCCAGCTC 788 | |||||| |||||| | ||||| ||||||||| | | ||||||||||| |||| Sbjct 727 TGAAGCTTCCTCCATCGCCGGTGATTGATCCTGACGTCT-TACGATACACTCTTGAGCTA 785 Query 789 ACGCGTGAAGATATCCAAACGCTTCGCGAGAGACTTAAGAGAGA 832 || || ||||||||||||| |||||| |||||||| |||||||| Sbjct 786 ACTCGCGAAGATATCCAAATGCTTCGAGAGAGACTCAAGAGAGA 829 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56297382110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5