BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39080.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823 1125 0.0
Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1 989 0.0
Ahg947925 jgi|Araly1|947925|scaffold_704154.1 776 0.0
> Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823
Length=1254
Score = 1125 bits (609), Expect = 0.0
Identities = 797/887 (90%), Gaps = 15/887 (2%)
Strand=Plus/Plus
Query 526 ATGGAAAAACGACAACCATGTTTCTCAAATCCTGGGCTCACAT-ATG-TAAACATCAAGA 583
||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||||
Sbjct 370 ATGGAAAAACGACAACCATGTTTCTCAAATCTTGGGCACAC-TCATGTTAAACATCAAGA 428
Query 584 TTTTTCTCTACCGCAGGATTTAATCCCAACTTACGATCGTACGGTCATTAAAAGTCCAAC 643
|| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct 429 TTCTTCTCTACCGCAGGATTTAATCCCAAATTACAATCGTACGGTCATAAAAAGTCCAAC 488
Query 644 GGATAGTGAAAACAAAGTTTTGAATGAGTGGCGCTCTTTCA-CCAAAATATTAGCTGGTG 702
|||||||||||||||||| ||||||||||||| |||||| | ||||||| ||||| ||||
Sbjct 489 GGATAGTGAAAACAAAGTGTTGAATGAGTGGCACTCTTT-AGCCAAAATGTTAGCGGGTG 547
Query 703 GTAAAGAACCTGCCAACCCCAAGAGTTTAAAGCTTAATCCATCATTTGAGATTGGTCCTG 762
|||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 548 GTAAAGAACCTGAGAACCCCAAGAGTTTAAAGCTTAAACCGTCATTTGAGATTGGTCCTG 607
Query 763 ACGTTGTCCGATACACTCTCCAGCTCACGCGTGAAGATATCCAAACGCTTCGCGAGAGAC 822
|||||||||| ||||||||| ||||||| |||||||||||||||||| ||| ||||||||
Sbjct 608 ACGTTGTCCGGTACACTCTCGAGCTCACTCGTGAAGATATCCAAACGTTTCACGAGAGAC 667
Query 823 TTAAGAGAGAAGTTtcctcctcctcctcctcaacctcatcctcAAAAGAGCTTCGCTTGT 882
||||||||||| ||| | || ||||||||| ||||| ||||||| || ||||||||||
Sbjct 668 TTAAGAGAGAA-TTT--T-CT--TCCTCCTCACCCTCACCCTCAAAGGACCTTCGCTTGT 721
Query 883 CTACATTTGTTATTGTTTACTCGTATGTATTAGTATGCATAATAAGAGCTCGAGGCGGGG 942
|||||||||||||||||||||| || | ||||| ||| ||||||||||||||||||| |
Sbjct 722 CTACATTTGTTATTGTTTACTCATACGCGTTAGTGTGCTTAATAAGAGCTCGAGGCGGAG 781
Query 943 AACC-ACATAGACCGGTTGGATATGCGTTTTCGGTGGATTGTCGAAGCCTCATGAATCCG 1001
|||| | ||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 782 AACCGA-ATAGACCGGTTGGATATGCATTTTCGGTAGATTGTCGAAGCCTCATCAATCCA 840
Query 1002 CCGACTCCAAATTATTTTGGAAATTGCATCGCTGGTTGCTCT-AGAATGATGCTGACGGC 1060
|| || |||| ||||||||||||||| ||| ||||||||| | ||||||||| ||| |||
Sbjct 841 CCCACCCCAAGTTATTTTGGAAATTGTATCTCTGGTTGCT-TGAGAATGATGTTGAAGGC 899
Query 1061 AAAAATGTTTATGGGTGAAGAAGGACTTTTGGCTGCTGCGACAATGGTCAGCGATTCGAT 1120
||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 900 AAAAACGTTTATGGGTGAAGAAGGGCTTTTGGCTGCTGCGAAAATGGTCAGCGATTCGAT 959
Query 1121 CGAAGAATGGGACGAGAGTTTTGCGTGGAAGATTCCGGATTTTGTAGCATATGCAACTCT 1180
||| ||||||||||||||||| || ||||||||| ||||||| |||||| |||||||||
Sbjct 960 CGAGGAATGGGACGAGAGTTTGGCATGGAAGATTTCGGATTTCCTAGCATTTGCAACTCT 1019
Query 1181 TCCACCAGAGACACAACTTATTTTAGTTTCAGGGTCTAACCGATTTGGAGTATACGAGTT 1240
|||||||| ||||||| ||||||||| ||| |||||| ||||||||||||||||| |||
Sbjct 1020 TCCACCAGGGACACAAATTATTTTAGCTTCCTGGTCTACCCGATTTGGAGTATACGGGTT 1079
Query 1241 GGATTTTGGGTGGGGTAGACCTGATAAAGTGATGGTTGTGTCGATCAGTCCAGGCAATGG 1300
||||||||| ||||| ||||| ||||||||| || ||||||||||||||| |||||||||
Sbjct 1080 GGATTTTGGATGGGGCAGACCGGATAAAGTGGTGATTGTGTCGATCAGTCAAGGCAATGG 1139
Query 1301 GATTTCCATGGCGGAAAGTAGAGACCAAAACGGCAGTGTGGAGATTGGCTTCTCACTCAA 1360
|||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1140 GATTTCCATGGCTGATAGTAGAGACCAAATCGGCGGTGTGGAGATTGGCTTCTCACTCAA 1199
Query 1361 GAAGCACGAAATGGACACATTGATTGATTTGCTTCATTGTGAACTAA 1407
||| || |||||||||||| ||||||||||||| || | ||| ||||
Sbjct 1200 GAAACAAGAAATGGACACACTGATTGATTTGCTCCAATATGATCTAA 1246
> Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1
Length=1452
Score = 989 bits (535), Expect = 0.0
Identities = 1131/1412 (80%), Gaps = 68/1412 (5%)
Strand=Plus/Plus
Query 20 AGAAATGGTTTCATCACTTAACATCATCGAAGTGGCACGAGTCACC-CCTTCAAACTCTG 78
|||||||| |||||||||||| |||||||| ||||||| |||| || || ||||||||||
Sbjct 20 AGAAATGGATTCATCACTTAAAATCATCGACGTGGCACAAGTC-CCTCCATCAAACTCTG 78
Query 79 ACTCGGCCGAGTCACTCAGTCTCCCACTCA-CTTATTTCGACCTTATCTATTATAAACTT 137
||||| |||||||||||| ||||||||||| ||| |||||||| ||| |||||||||
Sbjct 79 ACTCGTCCGAGTCACTCACTCTCCCACTCACCTT-CTTCGACCTCCTCTGGTATAAACTT 137
Query 138 CGCGCCGTCGAACGAGTCATCTTCTACCGAA-TCACCAACGTAACTCGCCCTTTCTTTGA 196
| |||||||||||||||||||||||| | || |||| ||| |||||| |||||||| ||
Sbjct 138 CACGCCGTCGAACGAGTCATCTTCTA-CAAACTCACTGACGCAACTCGTCCTTTCTTCGA 196
Query 197 CTCAGTCATCGTCCCAAATCTCAAAACCTCTCTATCCTCATGCCTCTCTCACTATCTCCC 256
||||||||||||||| || |||||||||||||| ||||| | |||||||||||| |||||
Sbjct 197 CTCAGTCATCGTCCCCAACCTCAAAACCTCTCTCTCCTCCTCCCTCTCTCACTACCTCCC 256
Query 257 ACTCGCTGGCAAACTTATATGGGAACCACTTGATCACAAACCAACCATTGTCTACTCCCA 316
|||||| || ||||| | |||||||||||||||| |||||||| || ||||| |||
Sbjct 257 ACTCGCCGGAAAACTCGTCTGGGAACCACTTGATCCCAAACCAAAAATCATCTACACCCC 316
Query 317 AAACGACGACGTTTCATTCAGCGTCGCCGAAACAAACGCTGATTTCTCTA-GTTTATCCG 375
|||||||| ||||||||||| ||||||||| ||||||| || ||||| | |||||||||
Sbjct 317 AAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGACTTCTC-ACGTTTATCCG 375
Query 376 GCAATGAACCATTCCCCTCCACCGAGTTGTACCCGTTAGTCCCCGCGTTACAAAG-CTCC 434
|||| ||||||| |||| || ||||||| |||||||||||||||| ||||| ||| |||
Sbjct 376 GCAACGAACCATACCCCACCGCCGAGTTATACCCGTTAGTCCCCGAGTTAC-AAGTTTCC 434
Query 435 GACGACTCGGCCTCCATTGTGTCGTTCCAAGTCACGTTATTTCCAAACCAAGGATTTTGC 494
|| ||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 435 GATGACTCAGCCTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGC 494
Query 495 ATCGGCG-TAAGTGCACATCATGCCGTTTTAGATGGAAAAACGACAACCATGTTTCTCAA 553
||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ATCTGCGTTAA-CGCACATCATGCCGTTTTAGATGGAAAAACGACAACCATGTTTCTCAA 553
Query 554 ATCCTGGGCTCACATATGTAAACATCAAGATTTTTCTCTACCGCAGGAT-TTAATCCCAA 612
||| ||||| |||| ||||||| ||||||||| |||||||||| | ||| ||| ||||||
Sbjct 554 ATCTTGGGCACACACATGTAAAAATCAAGATTCTTCTCTACCGGACGATCTTA-TCCCAA 612
Query 613 CTTACGATCGTACGGTCATTAAAAG-TCCAACGGATAGT-GAAAACAAA-GTTTTGAATG 669
|||||||||||||||||| ||||| |||||||||| | || | |||| || || || |
Sbjct 613 TTTACGATCGTACGGTCAT-AAAAGATCCAACGGATT-TAGATA-CAAAAGTCTTAAACG 669
Query 670 AGTGGCGCTCTTTCAC-CAAAATATT-AGCTGGTGGTAAAGAACCTGCCAACCCCAAGAG 727
|||| | | | |||| | || | | |||||||||||||| | ||||| || ||
Sbjct 670 CTTGGCACAAAGT-AGGCAAAGTCTTCACC-GGTGGTAAAGAACCAGAAAACCCTAAAAG 727
Query 728 TTTAAAGCTTA-ATCCATCATTTGA-GATTGGTCCTGACGTTGTCCGATACACTCTCCAG 785
|||||||||| || || || | ||||||| |||||| |||||||||||||| |
Sbjct 728 TTTAAAGCTTTTATGG-TCGCCGGAAG-TTGGTCCCGACGTTTTCCGATACACTCTCAAT 785
Query 786 CTCACGCGTGAAGATATCCAAACGCTTCGCGAGAGACTTAAGAGAGAAGT-Ttcctcctc 844
|| || ||| ||||||||| |||| | || ||||| |||| ||| || |||||||||
Sbjct 786 CTTACTAAAGAAAATATCCAAAAGCTTAGAGAAAGACTCAAGAAAGA-GTCTTCCTCCTC 844
Query 845 ctcctcctcaacctcatcctcAAAAGAGCTTCGCTTGTCTACATTTGTTATTGTTTACTC 904
| | ||| | ||| || |||||||||||| || || || ||||| |||||||||||
Sbjct 845 -TGTT--TCATCATCA-CC--AAAAGAGCTTCGTTTATCAACGTTTGTGATTGTTTACTC 898
Query 905 GTATG-TATTAGTATGCATAAT-AAGAGCTCGAGGCGGGGAACC-ACATAGACCGGTTGG 961
|||| | ||| || |||| || |||||||||||| || || | ||||||| || ||
Sbjct 899 TTATGCT-TTAACGTGTTTAATCAA-AGCTCGAGGCGGTGATCCGA-ATAGACCAGTCGG 955
Query 962 ATATGCGTTTT-CGGTGGATTGTCGAAGCCTCATGAATCCGCC-GA-C-TCCAAATTATT 1017
|| | | || ||||||||||||||||||| ||| ||| || | | | | | |||||
Sbjct 956 GTACG-GATTCGCGGTGGATTGTCGAAGCCTTATGGTTCCACCAGTTCCTTCTAGTTATT 1014
Query 1018 TTGGAAATTGCATCGCTGGTTGCTCTAGAATGA-TGCTGACGGCAAAAATGTTT-ATGGG 1075
|||| ||||| || ||| ||| | || |||| | | | |||| | | |||| ||| |
Sbjct 1015 TTGGTAATTGTGTCTCTGCTTGTTTTAAAATGCCTA-TAAAGGCAGAGA-GTTTTATGAG 1072
Query 1076 TGAAGAAGGACTTTTGGCTGCTGCGACAATGGTCAGCGATTCGATCGAAGAATGGGACGA 1135
|||||||||| |||| |||||||| | | |||| || |||||| | || | || ||| ||
Sbjct 1073 TGAAGAAGGATTTTTAGCTGCTGCAAGATTGGTTAGTGATTCGGTTGAGGCATTGGATGA 1132
Query 1136 GAGTTTTGCGTGGAAGATTCCGGA--TTTTGTA-GCATATGCAACTCTTCCACCAG-AGA 1191
|| | | || ||||||||||| || ||||| | | | | | ||||||||||||| ||
Sbjct 1133 GAATGTAGCATGGAAGATTCCAGAGCTTTTGGAAGGGTTTACGACTCTTCCACCAGGAG- 1191
Query 1192 CACAACTTATT-T-TAGTTTCAGGGTCTAACCGATTTGGAGTATACGAGTTGGATTTTGG 1249
||||| || || | | ||| | ||||| | ||| ||||||||||||| ||||||||| ||
Sbjct 1192 CACAAGTT-TTGTCT-GTTGCCGGGTCGACCCGGTTTGGAGTATACGGGTTGGATTTCGG 1249
Query 1250 GTGGGGTAGACCTGATAAAGTGATGGTTGTGTCGATC-AGTCCAGGC-AATGGGATTTCC 1307
|||||||||||| || |||||| ||||||||||||| | || ||| || | ||||||
Sbjct 1250 GTGGGGTAGACCGGAGAAAGTGGTGGTTGTGTCGATTGA-TCAAGGTGAA-GCGATTTCT 1307
Query 1308 ATGGCGGAAAGTAGAGACCAAAACGGCAGTGTGGAGATTGGCTTCTCACTCAAGAAGCAC 1367
|| ||||| |||||||| || || |||| |||||||||||||| |||||||| ||
Sbjct 1308 ATTGCGGAGAGTAGAGATGGGAATGGTGGTGTAGAGATTGGCTTCTCGCTCAAGAAACAT 1367
Query 1368 GAAATGGACA--CATTGATTGATTTGCTTCAT 1397
|||||||| | ||| |||| |||||||||
Sbjct 1368 GAAATGGATGTTC-TTG-TTGAGTTGCTTCAT 1397
> Ahg947925 jgi|Araly1|947925|scaffold_704154.1
Length=1411
Score = 776 bits (420), Expect = 0.0
Identities = 693/824 (84%), Gaps = 22/824 (3%)
Strand=Plus/Plus
Query 20 AGAAATGGTTTCATCACTTAACATCATCGAAGTGGCACGAGTCACCCCTTCAAACTCTGA 79
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 17 AGAAATGGTTTCATCACTTAACATCATCGACGTTGCACGAGTCACCCCTTCAAACTCTGA 76
Query 80 CTCGGCCGAGTCACTCAGTCTCCCACTCAC-TTATTTCGACCTTATCTA-TTATAA-ACT 136
||| |||| ||||||| ||||||||| || || || |||||| ||| || || | |
Sbjct 77 ATCGACCGACTCACTCACTCTCCCACTAACCTTCTT-CGACCTCCTCTGGTTC-AAGA-T 133
Query 137 TCGCGCCGTCGAACGAGTCATCTTCTACCGAATCACCAACGTAACTCGCCCTTTCTTTGA 196
|| |||||| |||||||||||||||||| || ||| | ||| |||| || ||||||||||
Sbjct 134 TCACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTGCTCTTTCTTTGA 193
Query 197 CTCAGTCATCGTCCCAAATCTCAAAACCTCTCTATCCTCATGCCTCTCTCACTATCTCCC 256
||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 194 CTCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCACTATCTCCC 253
Query 257 ACTCGCTGGCAAACTTATATGGGAACCACTTGATCACAAACCAACCATTGTCTACTCCCA 316
|||||| || ||||| | ||| ||||| |||| | |||||||| |||||| ||| |||
Sbjct 254 ACTCGCCGGAAAACTCGTCTGGAAACCATTTGAACCCAAACCAAGCATTGTATACACCCC 313
Query 317 AAACGACGACGTTTCATTCAGCGTCGCCGAAACAAACGCTGATTTCTCTAGTTTATCCGG 376
|||||||| ||||||||||| ||||||||| ||||||| |||||||| | ||| ||||
Sbjct 314 AAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCCGCTTAACCGG 373
Query 377 CAAT-GAACCATTCCCCTCCACCGAGTTGTACCCGTTAGTCCCCGCGTTACAAAGCTCCG 435
||| ||||||||| |||||| ||||||| |||| |||||||||| |||||||| |||||
Sbjct 374 -AATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCG 432
Query 436 ACGACTCGGCCTCCATTGTGTCGTTCCAAGTCACGTTATTTCCAAACCAAGGATTTTGCA 495
|||||||||| ||| | |||| || |||||||||||||||||||||||||| |||||||
Sbjct 433 ACGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCA 492
Query 496 TCGGCGTAAGTGCACATCATGCCGTTT-TAGATGGAAAAACGACAACCA-TGTTTCTCAA 553
||||||||| ||||| |||||||||| | ||||| ||||||||||||| | ||||||||
Sbjct 493 TCGGCGTAACCGCACACCATGCCGTTTCT-GATGGGAAAACGACAACCACT-TTTCTCAA 550
Query 554 ATCCTGGGCTCACATATGTAAACATCAAGATTTTTCTCTACCGCAGGATTTAATCCCAAC 613
||| ||||||||| | |||||||| ||||||| |||||||||| ||||| | || ||
Sbjct 551 ATCTTGGGCTCACTTCTGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGATTCCGTT 610
Query 614 TTACGATCGTACGGTCATTAAAAGTCCAACGGATAGTGAAA-ACAAAGTTTTGAA-TGAG 671
|||||||||||||||||| |||| |||| || ||||||| | | ||| ||||||| | |
Sbjct 611 TTACGATCGTACGGTCATAAAAAATCCACCGAATAGTGATATA-AAACTTTTGAACTCA- 668
Query 672 TGGCGCTCTTTCA-CCAAAATATTAGCTGGTGGTAAAGAACCTGCCAA-CCCCAAGAGTT 729
|||| |||||| | ||||||| || | || ||||||||||| | || |||||||||||
Sbjct 669 TGGCACTCTTT-AGCCAAAATGTTCTCCGGCGGTAAAGAACCA-CAAAACCCCAAGAGTT 726
Query 730 TAAAGCTTAATCCATCATTTGAGATTGGTCCTGACGT-TGTCCGATACACTCTCCAGCTC 788
| |||||| |||||| | ||||| ||||||||| | | ||||||||||| ||||
Sbjct 727 TGAAGCTTCCTCCATCGCCGGTGATTGATCCTGACGTCT-TACGATACACTCTTGAGCTA 785
Query 789 ACGCGTGAAGATATCCAAACGCTTCGCGAGAGACTTAAGAGAGA 832
|| || ||||||||||||| |||||| |||||||| ||||||||
Sbjct 786 ACTCGCGAAGATATCCAAATGCTTCGAGAGAGACTCAAGAGAGA 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5