BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39100.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494078 jgi|Araly1|494078|fgenesh2_kg.7__3511__AT5G39100.1 944 0.0
Ahg891829 jgi|Araly1|891829|Al_scaffold_0007_3815 909 0.0
Ahg891828 jgi|Araly1|891828|Al_scaffold_0007_3814 904 0.0
Ahg891952 jgi|Araly1|891952|Al_scaffold_0007_3938 881 0.0
Ahg891830 jgi|Araly1|891830|Al_scaffold_0007_3816 876 0.0
Ahg891827 jgi|Araly1|891827|Al_scaffold_0007_3813 662 0.0
Ahg891831 jgi|Araly1|891831|Al_scaffold_0007_3817 571 2e-162
> Ahg494078 jgi|Araly1|494078|fgenesh2_kg.7__3511__AT5G39100.1
Length=658
Score = 944 bits (511), Expect = 0.0
Identities = 612/661 (93%), Gaps = 5/661 (1%)
Strand=Plus/Plus
Query 177 TTTTTGTGAATGGAAAGTTCTGTAAGGATCCCAAGCAAGCGAAGGCAGAATAATTCTTCT 236
||||||||||||| ||||||||||||||||| |||||||| ||||||||| | |||||||
Sbjct 1 TTTTTGTGAATGGTAAGTTCTGTAAGGATCCGAAGCAAGCCAAGGCAGAAGATTTCTTCT 60
Query 237 TCTCAGGCCTCAACCAGGCAGGAAGCACTAATAATAAAGTCAGATCCAACGTGACAACAG 296
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct 61 TCTCAGGCCTCAACCAGGCAGGAAACACTGATAATAAAGTCAGATCCAACGTGACAACGG 120
Query 297 TCAATGTCGACCAGATTCCAGGGTTAAACACTATGGGAATATCCTTGGTCCGCATAGACT 356
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCAATGTCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACT 180
Query 357 ATGCACCATATGGACAAAACCCGCCTCACACGCACCCTCGTGCTACTGAGATCCTTGTCC 416
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 181 ATGCGCCGTATGGACAAAACCCGCCTCACACGCACCCGCGTGCTACTGAGATCCTTGTTC 240
Query 417 TTATCGAGGGAACGTTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACCGTCTAT 476
|| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 241 TTGTCGAGGGAACGTTATATGTCGGGTTTGTCTCTTCCAATCAAGACAATAACCGTTTAT 300
Query 477 TCGCCAAAGTTCTGTACCCGGGTGACGTGTTTGTGTTTCCCATAGGAATGATCCATTTTC 536
|||||||||| ||| |||| || |||||||| ||||| ||||||||||||||||||||||
Sbjct 301 TCGCCAAAGTGCTGAACCCCGGCGACGTGTTCGTGTTCCCCATAGGAATGATCCATTTTC 360
Query 537 AAGTGAATATCGGGAAAACGCCTGCGGTGGCCTTCGCTGGATTGAGTAGTCAGAATGCTG 596
|||||||||||||||| || || || ||||||| |||||||||||||||||||| ||||
Sbjct 361 AAGTGAATATCGGGAAGACCCCCGCAATGGCCTTTGCTGGATTGAGTAGTCAGAACGCTG 420
Query 597 GTGTTATCACGATCGCTGATACTGTGTTTGGGTCAACGCCTCCGATTAATCCAGATATTT 656
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GTGTTATCACGATCGCAGATACTGTGTTTGGGTCAACGCCTCCGATTAATCCATATATTC 480
Query 657 TAGCTCAAGCATTTCAATTAGATGTCAATATTGTCGAGGATCTTGAGGCCAAGTTTAGAA 716
||||||| |||||||| |||||||||||| ||||| |||| |||||||||||||||| ||
Sbjct 481 TAGCTCAGGCATTTCAGTTAGATGTCAATGTTGTCAAGGACCTTGAGGCCAAGTTTAAAA 540
Query 717 ACTAAATCTAGTCACCACAATACGAGTGTTTATGGTTGTAACACTTA-AGTAATGATGTA 775
||||||||||||||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct 541 ACTAAATCTAGTCACCATAATAT-AGTGTTTATCGTTGTAACACT-ACAGTAATGATGTA 598
Query 776 ACAAG-AGTTAAAGATTTATGCTCAATATAATAAAGAAAGGTGTTGTTCACCTAATTTGA 834
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 ACAAGTA-TTAAAGATTTATGCTGAATATAATAAAGAAAGGTGTTGTTCACCTAATTTGA 657
Query 835 T 835
|
Sbjct 658 T 658
> Ahg891829 jgi|Araly1|891829|Al_scaffold_0007_3815
Length=669
Score = 909 bits (492), Expect = 0.0
Identities = 612/671 (91%), Gaps = 4/671 (1%)
Strand=Plus/Plus
Query 53 ATGAGGGTTTCCAAGTCTCTCATCCTGATTACCTTATCGGCTTTGGTCATTTCCTTT-GC 111
||||||||| ||| ||||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 1 ATGAGGGTTCCCATGTCTCTCGTCTTGATTACCATATCGGCTTTGGTCATTTCCTTTGGC 60
Query 112 TGAAGCTTATGATCCAAGTCCACTTCAAGATTTCTGTGTGGCCATTGA-TGACCTCAAAA 170
||||||| ||||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 61 -GAAGCTTCTGATCCAAGTCCACTTCAAGACTTCTGTGTGGCCATT-AGTGACCTCAAAA 118
Query 171 ATGGTGTTTTTGTGAATGGAAAGTTCTGTAAGGATCCCAAGCAAGCGAAGGCAGAATAAT 230
||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| | |
Sbjct 119 ATGGTGTTTTTGTGAATGGTAAGTTCTGCAAGGATCCGAAGCAAGCGAAGGCAGAAGATT 178
Query 231 TCTTCTTCTCAGGCCTCAACCAGGCAGGAAGCACTAATAATAAAGTCAGATCCAACGTGA 290
|||||| ||||||||||||||||||||| | ||||||||||| ||||| |||||||||||
Sbjct 179 TCTTCTACTCAGGCCTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGA 238
Query 291 CAACAGTCAATGTCGACCAGATTCCAGGGTTAAACACTATGGGAATATCCTTGGTCCGCA 350
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 CAACGGTCAATGTCGACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCA 298
Query 351 TAGACTATGCACCATATGGACAAAACCCGCCTCACACGCACCCTCGTGCTACTGAGATCC 410
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 299 TAGACTATGCACCTTATGGACAAAACCCACCTCACACGCACCCTCGTGCCACTGAGATCC 358
Query 411 TTGTCCTTATCGAGGGAACGTTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACC 470
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGTTCTTGTCGAGGGAACATTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACC 418
Query 471 GTCTATTCGCCAAAGTTCTGTACCCGGGTGACGTGTTTGTGTTTCCCATAGGAATGATCC 530
|| ||||| ||||||| ||| |||| || |||||||| ||||| ||||||||||||||||
Sbjct 419 GTTTATTCACCAAAGTGCTGAACCCCGGCGACGTGTTCGTGTTCCCCATAGGAATGATCC 478
Query 531 ATTTTCAAGTGAATATCGGGAAAACGCCTGCGGTGGCCTTCGCTGGATTGAGTAGTCAGA 590
|||||||||||||||||||||| || || || ||||| || |||||| | ||||||||||
Sbjct 479 ATTTTCAAGTGAATATCGGGAAGACCCCAGCAGTGGCTTTTGCTGGACTAAGTAGTCAGA 538
Query 591 ATGCTGGTGTTATCACGATCGCTGATACTGTGTTTGGGTCAACGCCTCCGATTAATCCAG 650
| |||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 539 ACGCTGGTGTTATCACGATCGCAGACACTGTGTTCGGGTCAACGCCCCCGATTAATCCAG 598
Query 651 ATATTTTAGCTCAAGCATTTCAATTAGATGTCAATATTGTCGAGGATCTTGAGGCCAAGT 710
||||| | ||||| || ||||| |||||||||||| ||||| |||||||||| |||||||
Sbjct 599 ATATTCTCGCTCAGGCGTTTCAGTTAGATGTCAATGTTGTCAAGGATCTTGAAGCCAAGT 658
Query 711 TTAGAAACTAA 721
||| |||||||
Sbjct 659 TTAAAAACTAA 669
> Ahg891828 jgi|Araly1|891828|Al_scaffold_0007_3814
Length=669
Score = 904 bits (489), Expect = 0.0
Identities = 609/669 (91%), Gaps = 0/669 (0%)
Strand=Plus/Plus
Query 53 ATGAGGGTTTCCAAGTCTCTCATCCTGATTACCTTATCGGCTTTGGTCATTTCCTTTGCT 112
||||||||| ||| ||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 1 ATGAGGGTTCCCATGTCTCTCGTCTTGATTACAATATCGGCTTTGGTCATTTCCTTTGCC 60
Query 113 GAAGCTTATGATCCAAGTCCACTTCAAGATTTCTGTGTGGCCATTGATGACCTCAAAAAT 172
||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 61 GAAGCTTCTGATCCAAGTCCACTTCAAGACTTCTGCGTGGCCATTGGTGACCTCAAAAAT 120
Query 173 GGTGTTTTTGTGAATGGAAAGTTCTGTAAGGATCCCAAGCAAGCGAAGGCAGAATAATTC 232
||||||||||||||||| |||||||| |||||||| |||||||||||||||||| | |||
Sbjct 121 GGTGTTTTTGTGAATGGTAAGTTCTGCAAGGATCCGAAGCAAGCGAAGGCAGAAGATTTC 180
Query 233 TTCTTCTCAGGCCTCAACCAGGCAGGAAGCACTAATAATAAAGTCAGATCCAACGTGACA 292
|||| ||||||||||||||||||||| | ||||||||||| ||||| |||||||||||||
Sbjct 181 TTCTACTCAGGCCTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGACA 240
Query 293 ACAGTCAATGTCGACCAGATTCCAGGGTTAAACACTATGGGAATATCCTTGGTCCGCATA 352
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 ACGGTCAATGTCGACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATA 300
Query 353 GACTATGCACCATATGGACAAAACCCGCCTCACACGCACCCTCGTGCTACTGAGATCCTT 412
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 GACTATGCACCTTATGGACAAAACCCACCTCACACGCACCCTCGTGCCACTGAGATCCTT 360
Query 413 GTCCTTATCGAGGGAACGTTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACCGT 472
|| ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GTTCTTGTCGAGGGAACATTATATGTTGGTTTTGTTTCTTCCAATCAAGACAATAACCGT 420
Query 473 CTATTCGCCAAAGTTCTGTACCCGGGTGACGTGTTTGTGTTTCCCATAGGAATGATCCAT 532
||||||||||||| ||| |||| || |||||||| ||||| ||||||||||||||||||
Sbjct 421 TTATTCGCCAAAGTGCTGAACCCCGGCGACGTGTTCGTGTTCCCCATAGGAATGATCCAT 480
Query 533 TTTCAAGTGAATATCGGGAAAACGCCTGCGGTGGCCTTCGCTGGATTGAGTAGTCAGAAT 592
|||||||||||||||||||| || || || ||||| || |||||| | |||||||||||
Sbjct 481 TTTCAAGTGAATATCGGGAAGACCCCAGCAGTGGCTTTTGCTGGACTAAGTAGTCAGAAC 540
Query 593 GCTGGTGTTATCACGATCGCTGATACTGTGTTTGGGTCAACGCCTCCGATTAATCCAGAT 652
|||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 541 GCTGGTGTTATCACGATCGCAGACACTGTGTTCGGGTCAACGCCCCCGATTAATCCAGAT 600
Query 653 ATTTTAGCTCAAGCATTTCAATTAGATGTCAATATTGTCGAGGATCTTGAGGCCAAGTTT 712
||| | ||||| || ||||| |||||||||||| ||||| |||||||||| || ||||||
Sbjct 601 ATTCTCGCTCAGGCGTTTCAGTTAGATGTCAATGTTGTCAAGGATCTTGAAGCGAAGTTT 660
Query 713 AGAAACTAA 721
| |||||||
Sbjct 661 AAAAACTAA 669
> Ahg891952 jgi|Araly1|891952|Al_scaffold_0007_3938
Length=669
Score = 881 bits (477), Expect = 0.0
Identities = 606/670 (90%), Gaps = 2/670 (0%)
Strand=Plus/Plus
Query 53 ATGAGGGTTTCCAAGTCTCTCATCCTGATTACCTTATCGGCTTTGGTCATTTCCTTTGCT 112
||||||||| ||| || |||| || |||||||| |||||||||||||||||||||||||
Sbjct 1 ATGAGGGTTCCCATGTTTCTCGTCTTGATTACCATATCGGCTTTGGTCATTTCCTTTGCC 60
Query 113 GAAGCTTATGATCCAAGTCCACTTCAAGATTTCTGTGTGGCCATTGATGACCTCAAAAAT 172
|||||| |||||||||||||||||||||| |||||||||||||||| |||||| || |||
Sbjct 61 GAAGCTAATGATCCAAGTCCACTTCAAGACTTCTGTGTGGCCATTGGTGACCTTAAGAAT 120
Query 173 GGTGTTTTTGTGAATGGAAAGTTCTGTAAGGATCCCAAGCAAGCGAAGGCAGAATAATTC 232
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct 121 GGTGTTTTTGTGAATGGTAAGTTTTGTAAGGATCCGAAGCAAGCGAAGGCAGAAGATTTC 180
Query 233 TTCTTCTC-AGGCCTCAACCAGGCAGGAAGCACTAATAATAAAGTCAGATCCAACGTGAC 291
|||||| | |||||||||| ||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 181 TTCTTC-CAAGGCCTCAACAAGGCAGGAAACACTACTAATAGAGTCAAATCCAACGTGAC 239
Query 292 AACAGTCAATGTCGACCAGATTCCAGGGTTAAACACTATGGGAATATCCTTGGTCCGCAT 351
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 240 AACAGTCAATGTCGACCAGATTCCCGGGTTAAACACTTTGGGAATATCCTTGGTCCGCAT 299
Query 352 AGACTATGCACCATATGGACAAAACCCGCCTCACACGCACCCTCGTGCTACTGAGATCCT 411
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 AGACTATGCGCCTTATGGACAAAACCCGCCTCACACGCACCCTCGTGCCACTGAGATCCT 359
Query 412 TGTCCTTATCGAGGGAACGTTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACCG 471
||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 360 TGTTCTTGTCGAGGGAACGTTATATGTAGGTTTTGTCTCCTCCAATCAAGACAATAACCG 419
Query 472 TCTATTCGCCAAAGTTCTGTACCCGGGTGACGTGTTTGTGTTTCCCATAGGAATGATCCA 531
| ||||||||||||| ||| |||| || |||||||| ||||| |||||||||||||||||
Sbjct 420 TTTATTCGCCAAAGTGCTGAACCCCGGCGACGTGTTCGTGTTCCCCATAGGAATGATCCA 479
Query 532 TTTTCAAGTGAATATCGGGAAAACGCCTGCGGTGGCCTTCGCTGGATTGAGTAGTCAGAA 591
||| ||||||||||||||||| || ||||| ||||| || |||||| | | |||||||||
Sbjct 480 TTTCCAAGTGAATATCGGGAAGACCCCTGCAGTGGCTTTTGCTGGACTAAATAGTCAGAA 539
Query 592 TGCTGGTGTTATCACGATCGCTGATACTGTGTTTGGGTCAACGCCTCCGATTAATCCAGA 651
|||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct 540 CGCTGGTGTTATCACGATCGCAGACACTGTGTTCGGGTCAACGCCCCCAATTAATCCAGA 599
Query 652 TATTTTAGCTCAAGCATTTCAATTAGATGTCAATATTGTCGAGGATCTTGAGGCCAAGTT 711
|||| | ||||| || ||||| |||||||||||| ||||| |||||||||| ||||||||
Sbjct 600 TATTCTCGCTCAGGCGTTTCAGTTAGATGTCAATGTTGTCAAGGATCTTGAAGCCAAGTT 659
Query 712 TAGAAACTAA 721
|| |||||||
Sbjct 660 TAAAAACTAA 669
> Ahg891830 jgi|Araly1|891830|Al_scaffold_0007_3816
Length=669
Score = 876 bits (474), Expect = 0.0
Identities = 606/671 (90%), Gaps = 4/671 (1%)
Strand=Plus/Plus
Query 53 ATGAGGGTTTCCAAGTCTCTCATCCTGATTACCTTATCGGCTTTGGTCATTTCCTTTGCT 112
||||||||| ||| ||||||| || |||||||| |||| ||||||||||||||||||||
Sbjct 1 ATGAGGGTTCCCATGTCTCTCGTCTTGATTACCATATCAGCTTTGGTCATTTCCTTTGCC 60
Query 113 GAAGCTTATGATCCAAGTCCACTTCAAGATTTCTGTGTGGCCATTGATGACCTCAAAAAT 172
||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 61 GAAGCTTCTGATCCAAGTCCACTTCAAGACTTCTGCGTGGCCATTGGTGACCTCAAAAAT 120
Query 173 GGTGTTTTTGTGAATGGAAAGTTCTGTAAGGATCCCAAGCAAGCGAAGGCAGAATAATTC 232
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||
Sbjct 121 GGTGTTTTTGTGAATGGTAAGTTCTGTAAGGATCCGAAGCAAGCGAAGGCAGAAGATTTC 180
Query 233 TTCTTCT-CAGGCCTCAACCAGGCAGGAAGCACTAATAATAAAGTCAGATCCAACGTGAC 291
||||| | ||||||||||| ||||||||| ||||| |||| ||||| ||||||||||||
Sbjct 181 TTCTT-TGCAGGCCTCAACAAGGCAGGAAACACTACCAATAGAGTCAAATCCAACGTGAC 239
Query 292 AACAGTCAATGTCGACCAGATTCCAGGGTTAAACACTA-TGGGAATATCCTTGGTCCGCA 350
||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 240 AACGGTCAATGTCGACCAGATTCCCGGGTTAAACAC-ATTGGGAATATCCTTGGTCCGCA 298
Query 351 TAGACTATGCACCATATGGACAAAACCCGCCTCACACGCACCCTCGTGCTACTGAGATCC 410
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 TAGACTATGCGCCTTATGGACAAAACCCGCCTCACACGCACCCTCGTGCCACTGAGATCC 358
Query 411 TTGTCCTTATCGAGGGAACGTTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACC 470
|||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 TTGTTCTTGTCGAGGGAACGTTATATGTAGGTTTTGTCTCTTCCAATCAAGACAATAACC 418
Query 471 GTCTATTCGCCAAAGTTCTGTACCCGGGTGACGTGTTTGTGTTTCCCATAGGAATGATCC 530
|| ||||||||||||| ||| |||| || |||||||| ||||| ||||| ||||||||||
Sbjct 419 GTTTATTCGCCAAAGTGCTGAACCCCGGCGACGTGTTCGTGTTCCCCATTGGAATGATCC 478
Query 531 ATTTTCAAGTGAATATCGGGAAAACGCCTGCGGTGGCCTTCGCTGGATTGAGTAGTCAGA 590
|||||||||||||||||||||| || || || |||||||| |||||| | ||||||||||
Sbjct 479 ATTTTCAAGTGAATATCGGGAAGACCCCCGCAGTGGCCTTTGCTGGACTAAGTAGTCAGA 538
Query 591 ATGCTGGTGTTATCACGATCGCTGATACTGTGTTTGGGTCAACGCCTCCGATTAATCCAG 650
| ||||||||||||| |||||| || |||||||| ||||||||||| || ||||||||||
Sbjct 539 ACGCTGGTGTTATCATGATCGCAGACACTGTGTTCGGGTCAACGCCCCCAATTAATCCAG 598
Query 651 ATATTTTAGCTCAAGCATTTCAATTAGATGTCAATATTGTCGAGGATCTTGAGGCCAAGT 710
||||| | ||||| |||||||| |||||||||| ||||| |||||||||| |||||||
Sbjct 599 ATATTCTCGCTCAGGCATTTCAGCTAGATGTCAACGTTGTCAAGGATCTTGAAGCCAAGT 658
Query 711 TTAGAAACTAA 721
||| |||||||
Sbjct 659 TTAAAAACTAA 669
> Ahg891827 jgi|Araly1|891827|Al_scaffold_0007_3813
Length=672
Score = 662 bits (358), Expect = 0.0
Identities = 536/622 (86%), Gaps = 11/622 (2%)
Strand=Plus/Plus
Query 95 TTGGTCATTTCCTTTGCTGAA-GCTTATGATCCAAGTCCACTTCAAGATTTCTGTGTGGC 153
||||||||| ||||| | || ||||||||||| |||||||| ||||| |||||||||||
Sbjct 43 TTGGTCATTCCCTTTTC-CAATGCTTATGATCCGAGTCCACTCCAAGACTTCTGTGTGGC 101
Query 154 CATTGATGACCTCAAAAATGGTGTTTTTGTGAATGGAAAGTTCTGTAAGGATCCCAAGCA 213
| ||| | ||||||| || ||||||||||||||| ||||||||||||||||| |||||
Sbjct 102 CGTTGGTAACCTCAACAA---TGTTTTTGTGAATGGTAAGTTCTGTAAGGATCCAAAGCA 158
Query 214 AGCGAAGGCAGAATAATTCTTCTTCTCAGGCCTCAACCAGGCAGGAAGCACTAATAATAA 273
||||||||| ||| | ||||||| |||||| |||||| |||| |||||||| ||||||||
Sbjct 159 AGCGAAGGCGGAAGACTTCTTCTACTCAGGTCTCAACAAGGCCGGAAGCACCAATAATAA 218
Query 274 AGTCAGATCCAACGTGACAACAGTCAATGTCGACCAGATTCCAGGGTTAAACACTATGGG 333
|||| ||||||||| |||||||| ||||| || |||||||||||| |||||||||||||
Sbjct 219 TGTCAAATCCAACGTCACAACAGTGAATGTTGATCAGATTCCAGGGCTAAACACTATGGG 278
Query 334 AATATCCTTGGTCCGCATAGACTATGCACCATATGGACAAAACCCGCCTCACACGCACCC 393
|||||| ||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 279 AATATCATTGGTTCGCATAGACTATGCGCCTTATGGCCAAAACCCGCCTCACACACACCC 338
Query 394 TCGTGCTACTGAGATCCTTGTCCTTATCGAGGGAACGTTATATGTTGGTTTTGTCTCTTC 453
||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 339 GCGTGCCACTGAAATCCTTGTCCTTGTCGAGGGAACGTTATATGTTGGGTTTGTCTCTTC 398
Query 454 CAATCAAGACAATAACCGTCTATTCGCCAAAGTTCTGTACCCGGGTGACGTGTTTGTGTT 513
||||||||||||||||||||| ||||||||| || || |||| ||||| ||||| |||||
Sbjct 399 CAATCAAGACAATAACCGTCTTTTCGCCAAAATTTTGCACCCCGGTGATGTGTTCGTGTT 458
Query 514 TCCCATAGGAATGATCCATTTTCAAGTGAATATCGGGAAAACGCCTGCGGTGGCCTTCGC 573
|||||||| ||||| ||||||||||||||||||||||| || || ||||| ||||| ||
Sbjct 459 CCCCATAGGGATGATTCATTTTCAAGTGAATATCGGGAAGACCCCCGCGGTTGCCTTTGC 518
Query 574 TGGA-TTGAGTAGTCAGAATGCTGGTGTTATCACGATCGCTGATACTGTGTTTGGGTC-A 631
||| || ||||||||||| |||||||| ||||| || || | ||||||||||| || |
Sbjct 519 CGGACTT-AGTAGTCAGAACGCTGGTGTCATCACAATTGCAAACACTGTGTTTGGTTCGA 577
Query 632 ACGCCTCCGATTAATCCAGATATTT-TAGCTCAAGCATTTCAATTAGATGTCAATATTGT 690
| ||||| ||| ||||||| | || | ||||| |||||||| |||||||| ||| | ||
Sbjct 578 AA-CCTCCCATTTATCCAGA-AGTTCTGGCTCAGGCATTTCAGTTAGATGTGAATGTCGT 635
Query 691 CGAGGATCTTGAGGCCAAGTTT 712
| | || |||||||||||||||
Sbjct 636 CAAAGACCTTGAGGCCAAGTTT 657
> Ahg891831 jgi|Araly1|891831|Al_scaffold_0007_3817
Length=501
Score = 571 bits (309), Expect = 2e-162
Identities = 408/455 (90%), Gaps = 9/455 (2%)
Strand=Plus/Plus
Query 129 GTCCACTTCAAGATTTCTGTGTGGCCATTGA-TGACCTCAAAAATGGT-G---TTTTTGT 183
||||||||||||| ||||| ||||||||| | |||||||||||||||| | |||||||
Sbjct 46 GTCCACTTCAAGACTTCTGCGTGGCCATT-AGTGACCTCAAAAATGGTGGTAATTTTTGT 104
Query 184 GAATGGAAAGTTCTGTAAGGATCCCAAGCAAGCGAAGGCAGAATAATTCTTCTTCTCAGG 243
|||||| |||||||| ||| |||| ||||||||||||||| || | ||||||| ||||||
Sbjct 105 GAATGGTAAGTTCTGCAAGTATCCGAAGCAAGCGAAGGCAAAAGATTTCTTCTACTCAGG 164
Query 244 CCTCAACCAGGCAGGAAGCACTAATAATAAAGTCAGATCCAACGTGACAACAGTCAATGT 303
||||||||||||||| | ||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 165 CCTCAACCAGGCAGGGACCACTAATAATAGAGTCAAATCCAACGTGACAACGGTCAATGT 224
Query 304 CGACCAGATTCCAGGGTTAAACACTATGGGAATATCCTTGGTCCGCATAGACTATGCACC 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 225 CGACCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACTATGCGCC 284
Query 364 ATATGGACAAAACCCGCCTCACACGCACCCTCGTGCTACTGAGATCCTTGTCCTTATCGA 423
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 285 TTATGGACAAAACCCACCTCACACGCACCCGCGTGCTACTGAGATCCTTGTTCTTGTCGA 344
Query 424 GGGAACGTTATATGTTGGTTTTGTCTCTTCCAATCAAGACAATAACCGTCTATTCGCCAA 483
|||||| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 345 GGGAACTTTGTATGTAGGTTTTGTCTCTTCCAATCAAGACAATAACCGTTTATTCGCCAA 404
Query 484 AGTTCTGTACCCGGGTGACGTGTTTGTGTTTCCCATAGGAATGATCCATTTTCAAGTGAA 543
||| ||| |||| || |||||||| |||||||| || ||||||||| |||||||||||||
Sbjct 405 AGTGCTGAACCCCGGCGACGTGTTCGTGTTTCCTATTGGAATGATCTATTTTCAAGTGAA 464
Query 544 TATCGGGAAA-ACGCCTGCGGTGGCCTTCGCTGGA 577
|||||| ||| || || || |||||||| | ||||
Sbjct 465 TATCGG-AAAGACCCC-GCAGTGGCCTTTGTTGGA 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5