BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39130.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494073 jgi|Araly1|494073|fgenesh2_kg.7__3506__AT5G39130.1 1110 0.0
Ahg891829 jgi|Araly1|891829|Al_scaffold_0007_3815 551 3e-156
Ahg891828 jgi|Araly1|891828|Al_scaffold_0007_3814 545 1e-154
Ahg494078 jgi|Araly1|494078|fgenesh2_kg.7__3511__AT5G39100.1 464 4e-130
> Ahg494073 jgi|Araly1|494073|fgenesh2_kg.7__3506__AT5G39130.1
Length=741
Score = 1110 bits (601), Expect = 0.0
Identities = 699/745 (94%), Gaps = 12/745 (2%)
Strand=Plus/Plus
Query 1 TACATGCATAACAAATTTAGAGCGAGC-----A--ATAATGAGGGTTTCTCAATCTCTAA 53
||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
Sbjct 1 TACATGCATAACAAATTTAGAGCGAGCATTATAGCATAATGATGGTTTCTCAATCTCTCA 60
Query 54 TCCCTTTTGCCATAATTGCTTTGGTCCTTTCCTTTGTCAATGCTTATGATCCAAGTCCAC 113
||||| ||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 61 TCCCTATTGCCATAATTTCTTTAGTCATTTCCTTTGCCAATGCTTATGATCCAAGTCCAC 120
Query 114 TCCAAGACTTCTGTGTTGCCATTGATGACCTAAAAGGCGTTTTTGTGAATGGTAGGTTTT 173
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TCCAAGACTTCTGTGTTGCCATTGATGACCTAAAAGGCGTTTTTGTGAACGGTAGGTTTT 180
Query 174 GTAAAGACCCGGAGCGAGTCGATGCAAAAGATTTTTTCTTCTCAGGTCTCAATGTGCCCG 233
||||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 181 GTAAAGACCCGAAGCGAGTCGATGCAAAAGATTTTTTCTTCTCAGGCCTCAACGTACCCG 240
Query 234 GGAACACCAATAATCAAGTTGGCTCTAATGTGACCACTGTTAATGTTGATCAGATCCCCG 293
||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 241 GGAACACGGATAATCAAGTTGGCTCTAATGTGACCATTGTAAATGTTGATCAGATCCCAG 300
Query 294 GGCTAAACACCATGGGAATATCATTGGTCCGCATAGACTACGCACCGCATGGCCAAAATC 353
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GGCTAAACACCATGGGAATATCATTGGTCCGCATAGACTACGCACCTCATGGCCAAAATC 360
Query 354 CACCTCACACGCACCCTCGTGGCTCAGAGATCCTTGTCCTTGTCGAAGGAACATTATACG 413
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CACCTCACACGCACCCTCGTGGCTCAGAGATCCTTGTCCTTGTCAAAGGAACATTATACG 420
Query 414 TCGGTTTTGTCTCTTCCAATCAAGATAACAACCGGTTATTCGCCAAAGTATTGCACCCCG 473
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGGTTTTGTCTCATCCAATCAAGATAACAACCGGTTATTCGCCAAAGTATTGCACCCCG 480
Query 474 GTGATGTTTTTGTGTTCCCCATAGGAATGATCCATTTTCAGTTAAATATCGGGAAAATTC 533
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GTGATGTTTTTGTGTTCCCCATAGGAATGATCCATTTTCAGGTAAATATCGGGAAAATTC 540
Query 534 CAGCAATTGCTTTTGCGGGATTGAGTAGCCAGAACGCTGGTGTTATCACAATTGCAAACA 593
|||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 541 CAGCCGTTGCTTTTGCGGGATTGAGTAGTCAGAACGCTGGTGTCATCACAATCGCAAACA 600
Query 594 CTGTGTTCGGGTCAAACCCTCCGATTTATCCAGAGCTTCTTGCCAGGGCGTTCCAGTTGG 653
|||| || |||||||||||||| ||||||||||||||||| |||||||| |||| |||||
Sbjct 601 CTGTTTTTGGGTCAAACCCTCCAATTTATCCAGAGCTTCTCGCCAGGGCATTCCGGTTGG 660
Query 654 ATGCAAATGTTGTCAAAGAACTTCAAGCCAAGTTTGGGTCCATATGAACTGATCATCTAA 713
|||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 661 ATGCAAGTGTTGTCAAAGAACTTCAGGCCAAGTTTGGGTCCATATGAACTGA--ATCTA- 717
Query 714 GTCGTT-TAAGAGTGTTTATCATTG 737
|||||| || |||||||||||||||
Sbjct 718 GTCGTTATA-GAGTGTTTATCATTG 741
> Ahg891829 jgi|Araly1|891829|Al_scaffold_0007_3815
Length=669
Score = 551 bits (298), Expect = 3e-156
Identities = 522/629 (83%), Gaps = 19/629 (3%)
Strand=Plus/Plus
Query 71 GCTTTGGTCCTTTCCTTTGTC-AATGCTTATGATCCAAGTCCACTCCAAGACTTCTGTGT 129
||||||||| ||||||||| | || |||| ||||||||||||||| ||||||||||||||
Sbjct 40 GCTTTGGTCATTTCCTTTGGCGAA-GCTTCTGATCCAAGTCCACTTCAAGACTTCTGTGT 98
Query 130 TGCCATTGA-TGACCT--AAAA-GGCGTTTTTGTGAATGGTAGGTTTTGTAAAGACCCGG 185
|||||| | |||||| |||| || |||||||||||||||| ||| || || || |||
Sbjct 99 GGCCATT-AGTGACCTCAAAAATGGTGTTTTTGTGAATGGTAAGTTCTGCAAGGATCCGA 157
Query 186 AGCGAGTCG-ATGCAAAAGATTTTTTCTTCTCAGGTCTCAATGTGCCCGGGAACACCAAT 244
||| || || | ||| ||||||| |||| |||||| ||||| | | |||| ||| |||
Sbjct 158 AGCAAG-CGAAGGCAGAAGATTTCTTCTACTCAGGCCTCAACCAGGCAGGGACCACTAAT 216
Query 245 AATCA-AGTTGGCTCTAATGTGACCACTGTTAATGTTGATCAGATCCCCGGGCTAAACAC 303
||| | ||| || || ||||| || || ||||| || ||||| || ||| |||||||
Sbjct 217 AAT-AGAGTCAAATCCAACGTGACAACGGTCAATGTCGACCAGATTCCAGGGTTAAACAC 275
Query 304 CATGGGAATATCATTGGTCCGCATAGACTACGCACCGCATGGCCAAAATCCACCTCACAC 363
|||||||||| ||||||||||||||||| ||||| |||| ||||| |||||||||||
Sbjct 276 TTTGGGAATATCCTTGGTCCGCATAGACTATGCACCTTATGGACAAAACCCACCTCACAC 335
Query 364 GCACCCTCGTGGCTCAGAGATCCTTGTCCTTGTCGAAGGAACATTATACGTCGGTTTTGT 423
||||||||||| | | ||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 336 GCACCCTCGTGCCACTGAGATCCTTGTTCTTGTCGAGGGAACATTATATGTTGGTTTTGT 395
Query 424 CTCTTCCAATCAAGATAACAACCGGTTATTCGCCAAAGTATTGCACCCCGGTGATGTTTT 483
||||||||||||||| || ||||| |||||| ||||||| || ||||||| || || ||
Sbjct 396 CTCTTCCAATCAAGACAATAACCGTTTATTCACCAAAGTGCTGAACCCCGGCGACGTGTT 455
Query 484 TGTGTTCCCCATAGGAATGATCCATTTTCA-GTTAAATATCGGGAAAATTCCAGCAATTG 542
||||||||||||||||||||||||||||| || || ||||||||| | |||||| | |
Sbjct 456 CGTGTTCCCCATAGGAATGATCCATTTTCAAGTGAA-TATCGGGAAGACCCCAGCAGTGG 514
Query 543 CTTTTGCGGGATTGAGTAGCCAGAACGCTGGTGTTATCACAATTGCAAACACTGTGTTCG 602
||||||| ||| | ||||| |||||||||||||||||||| || ||| ||||||||||||
Sbjct 515 CTTTTGCTGGACTAAGTAGTCAGAACGCTGGTGTTATCACGATCGCAGACACTGTGTTCG 574
Query 603 GGTCAAA-CCCTCCGATTTATCCAGAGCTTCTTGC-CAGGGCGTTCCAGTTGGATG-CAA 659
|||||| ||| |||||| ||||||| |||| || |||| |||| ||||| |||| |||
Sbjct 575 GGTCAACGCCC-CCGATTAATCCAGATATTCTCGCTCAGG-CGTTTCAGTTAGATGTCAA 632
Query 660 ATGTTGTCAAAGAACTTCAAGCCAAGTTT 688
||||||||| || ||| |||||||||||
Sbjct 633 -TGTTGTCAAGGATCTTGAAGCCAAGTTT 660
> Ahg891828 jgi|Araly1|891828|Al_scaffold_0007_3814
Length=669
Score = 545 bits (295), Expect = 1e-154
Identities = 520/628 (83%), Gaps = 17/628 (3%)
Strand=Plus/Plus
Query 71 GCTTTGGTCCTTTCCTTTGTC-AATGCTTATGATCCAAGTCCACTCCAAGACTTCTGTGT 129
||||||||| ||||||||| | || |||| ||||||||||||||| ||||||||||| ||
Sbjct 40 GCTTTGGTCATTTCCTTTGCCGAA-GCTTCTGATCCAAGTCCACTTCAAGACTTCTGCGT 98
Query 130 TGCCATTGATGACCT--AAAA-GGCGTTTTTGTGAATGGTAGGTTTTGTAAAGACCCGGA 186
||||||| |||||| |||| || |||||||||||||||| ||| || || || ||| |
Sbjct 99 GGCCATTGGTGACCTCAAAAATGGTGTTTTTGTGAATGGTAAGTTCTGCAAGGATCCGAA 158
Query 187 GCGAGTCG-ATGCAAAAGATTTTTTCTTCTCAGGTCTCAATGTGCCCGGGAACACCAATA 245
|| || || | ||| ||||||| |||| |||||| ||||| | | |||| ||| ||||
Sbjct 159 GCAAG-CGAAGGCAGAAGATTTCTTCTACTCAGGCCTCAACCAGGCAGGGACCACTAATA 217
Query 246 ATCA-AGTTGGCTCTAATGTGACCACTGTTAATGTTGATCAGATCCCCGGGCTAAACACC 304
|| | ||| || || ||||| || || ||||| || ||||| || ||| |||||||
Sbjct 218 AT-AGAGTCAAATCCAACGTGACAACGGTCAATGTCGACCAGATTCCAGGGTTAAACACT 276
Query 305 ATGGGAATATCATTGGTCCGCATAGACTACGCACCGCATGGCCAAAATCCACCTCACACG 364
|||||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct 277 TTGGGAATATCCTTGGTCCGCATAGACTATGCACCTTATGGACAAAACCCACCTCACACG 336
Query 365 CACCCTCGTGGCTCAGAGATCCTTGTCCTTGTCGAAGGAACATTATACGTCGGTTTTGTC 424
|||||||||| | | ||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 337 CACCCTCGTGCCACTGAGATCCTTGTTCTTGTCGAGGGAACATTATATGTTGGTTTTGTT 396
Query 425 TCTTCCAATCAAGATAACAACCGGTTATTCGCCAAAGTATTGCACCCCGGTGATGTTTTT 484
|||||||||||||| || ||||| |||||||||||||| || ||||||| || || ||
Sbjct 397 TCTTCCAATCAAGACAATAACCGTTTATTCGCCAAAGTGCTGAACCCCGGCGACGTGTTC 456
Query 485 GTGTTCCCCATAGGAATGATCCATTTTCA-GTTAAATATCGGGAAAATTCCAGCAATTGC 543
||||||||||||||||||||||||||||| || || ||||||||| | |||||| | ||
Sbjct 457 GTGTTCCCCATAGGAATGATCCATTTTCAAGTGAA-TATCGGGAAGACCCCAGCAGTGGC 515
Query 544 TTTTGCGGGATTGAGTAGCCAGAACGCTGGTGTTATCACAATTGCAAACACTGTGTTCGG 603
|||||| ||| | ||||| |||||||||||||||||||| || ||| |||||||||||||
Sbjct 516 TTTTGCTGGACTAAGTAGTCAGAACGCTGGTGTTATCACGATCGCAGACACTGTGTTCGG 575
Query 604 GTCAAA-CCCTCCGATTTATCCAGAGCTTCTTGC-CAGGGCGTTCCAGTTGGATG-CAAA 660
||||| ||| |||||| ||||||| |||| || |||| |||| ||||| |||| |||
Sbjct 576 GTCAACGCCC-CCGATTAATCCAGATATTCTCGCTCAGG-CGTTTCAGTTAGATGTCAA- 632
Query 661 TGTTGTCAAAGAACTTCAAGCCAAGTTT 688
||||||||| || ||| |||| ||||||
Sbjct 633 TGTTGTCAAGGATCTTGAAGCGAAGTTT 660
> Ahg494078 jgi|Araly1|494078|fgenesh2_kg.7__3511__AT5G39100.1
Length=658
Score = 464 bits (251), Expect = 4e-130
Identities = 446/541 (82%), Gaps = 10/541 (2%)
Strand=Plus/Plus
Query 153 TTTTTGTGAATGGTAGGTTTTGTAAAGACCCGGAGCGAGTCGATGCAAAAGATTTTTTCT 212
||||||||||||||| ||| ||||| || ||| ||| || | | ||| ||||||| ||||
Sbjct 1 TTTTTGTGAATGGTAAGTTCTGTAAGGATCCGAAGCAAGCCAAGGCAGAAGATTTCTTCT 60
Query 213 TCTCAGGTCTCAATGTGCCCGGGAACACCAATAATCAAGTTGGCTCTAATGTGACCACTG 272
||||||| ||||| | | || ||||| ||||| |||| | || || ||||| || |
Sbjct 61 TCTCAGGCCTCAACCAGGCAGGAAACACTGATAATAAAGTCAGATCCAACGTGACAACGG 120
Query 273 TTAATGTTGATCAGATCCCCGGGCTAAACACCATGGGAATATCATTGGTCCGCATAGACT 332
| ||||| |||||||| || ||| ||||||| |||||||||| ||||||||||||||||
Sbjct 121 TCAATGTCGATCAGATTCCAGGGTTAAACACTTTGGGAATATCCTTGGTCCGCATAGACT 180
Query 333 ACGCACCGCATGGCCAAAATCCACCTCACACGCACCCTCGTGGCT-CAGAGATCCTTGTC 391
| || ||| |||| ||||| || |||||||||||||| ||| ||| | |||||||||||
Sbjct 181 ATGCGCCGTATGGACAAAACCCGCCTCACACGCACCCGCGT-GCTACTGAGATCCTTGTT 239
Query 392 CTTGTCGAAGGAACATTATACGTCGGTTTTGTCTCTTCCAATCAAGATAACAACCGGTTA 451
|||||||| ||||| ||||| ||||| |||||||||||||||||||| || ||||| |||
Sbjct 240 CTTGTCGAGGGAACGTTATATGTCGGGTTTGTCTCTTCCAATCAAGACAATAACCGTTTA 299
Query 452 TTCGCCAAAGTATTGCACCCCGGTGATGTTTTTGTGTTCCCCATAGGAATGATCCATTTT 511
||||||||||| || ||||||| || || || |||||||||||||||||||||||||||
Sbjct 300 TTCGCCAAAGTGCTGAACCCCGGCGACGTGTTCGTGTTCCCCATAGGAATGATCCATTTT 359
Query 512 CA-GTTAAATATCGGGAAAATTCCAGCAATTGCTTTTGCGGGATTGAGTAGCCAGAACGC 570
|| || || ||||||||| | || ||||| || ||||| ||||||||||| ||||||||
Sbjct 360 CAAGTGAA-TATCGGGAAGACCCCCGCAATGGCCTTTGCTGGATTGAGTAGTCAGAACGC 418
Query 571 TGGTGTTATCACAATTGCAAACACTGTGTTCGGGTCAAAC-CCTCCGATTTATCCAGAGC 629
|||||||||||| || ||| | |||||||| ||||||| | ||||||||| ||||| |
Sbjct 419 TGGTGTTATCACGATCGCAGATACTGTGTTTGGGTCAA-CGCCTCCGATTAATCCATATA 477
Query 630 TTCTTGC-CAGGGCGTTCCAGTTGGATG-CAAATGTTGTCAAAGAACTTCAAGCCAAGTT 687
|||| || |||| | || ||||| |||| ||| ||||||||| || ||| | ||||||||
Sbjct 478 TTCTAGCTCAGG-CATTTCAGTTAGATGTCAA-TGTTGTCAAGGACCTTGAGGCCAAGTT 535
Query 688 T 688
|
Sbjct 536 T 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5