BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39200.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891825 jgi|Araly1|891825|Al_scaffold_0007_3811 821 0.0
> Ahg891825 jgi|Araly1|891825|Al_scaffold_0007_3811
Length=594
Score = 821 bits (444), Expect = 0.0
Identities = 555/607 (91%), Gaps = 14/607 (2%)
Strand=Plus/Plus
Query 1 ATGGACCAGGAAACTAAACCAGGCTATGAACCGGATCGGATTCCACATTCGGTTTTTGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 ATGGACCAGGAAACTAAACCAGGCTATGAACCGGATCGGATTCCACATTCGATTTTCGCA 60
Query 61 ACCTCGGTAACTCCAAAACAAGAATGGAGTATCCAATCGAACGAGTCTTTGTTCAGTATT 120
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ACCTCGATAACTCCTAAACAAGAATGGAGTATCCAATCGAACGAATCTTTGTTCAGTATT 120
Query 121 CACATGGGAGACCATAGTTTCTCCAAGATGTATAAATCTGGAGAACTCACCAATTTCGAA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CACATGGGAGACCATAGTTTCTCCAAAATGTATAAATCTGGAGAACTCACCAATTTCGAA 180
Query 181 TATACTGCTTCGCCCTATATTAGCTACTATAACAATAACATTGATAACAAAATTGCTCCG 240
||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |
Sbjct 181 TATACTGCTTCGCCCTATATTAGCTACAATAACAACAACATTGATAACAAAAACACTTTG 240
Query 241 ACTGACGCTGGAACCAAAGAAGTCAATATAACCATGGTGGAAACCGGACCAAAAACC-GG 299
|| ||| ||||||| |||||||||||||||||| | || || || ||||||||| || ||
Sbjct 241 ACCGACCCTGGAACGAAAGAAGTCAATATAACCGTAGTAGAGACGGGACCAAAA-CCTGG 299
Query 300 TAATCGAGATGGCTTAACCAATGTTCCTAAACCGGATCCACGACAACAGATTCCTATTTC 359
||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 300 TAATCGAGATGGCTTAATCAATGTTCCAAAACCGGATCCACGACAGCAGATTCCTATTTC 359
Query 360 TCCAACCAAGTCTTGTCACTCCGAAACAAGTAATAACAGTACAACTTCTTTCGCATTTCC 419
||| |||||||||| |||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 360 TCCGACCAAGTCTTATCACTCTGAAACAAGTAATAACAGTGCAGCTTCTTTCGCATTTCC 419
Query 420 CACATTAGGAGAGTACCAACAAGAGCGAAAGACATCACTAAACACGAAGAGTGAAAGTGG 479
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 420 CACATTAGGAGAGTACCAACAAGAACGAAAGACATCACTAAACATGAAGAGTGAAAGTGG 479
Query 480 AAAAAGAGAACTATCAAGACTTGACTCGAAGACCGGATTGTACCCGGATGATTCGAAACA 539
||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||
Sbjct 480 AAAAAGAGAACTATCAAGACTCGACTCGAAGACCGGTTTGTACCAGGATGCTTCGAAACA 539
Query 540 GGGCGGTGCTGGTGCTGGTGCTGGTGGTTGGCTTTCTTGTTGTCTCTGTTTTTCGGTGAA 599
|||||||||||||| | | ||| |||||||||| |||||||||||| | |||
Sbjct 540 GGGCGGTGCTGGTG--G-T--TGG-------CTTTCTTGTTTTCTCTGTTTTTCCGAGAA 587
Query 600 AAATTGA 606
|||||||
Sbjct 588 AAATTGA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5