BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39220.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947914 jgi|Araly1|947914|scaffold_704143.1 1644 0.0
> Ahg947914 jgi|Araly1|947914|scaffold_704143.1
Length=1036
Score = 1644 bits (890), Expect = 0.0
Identities = 981/1026 (96%), Gaps = 2/1026 (0%)
Strand=Plus/Plus
Query 88 agagagagaAATGATGGGTAGCTTGAAAATAATATCTCCACCACCTCCGGCGACAAGATT 147
|||||||||||||||||||||||||||||| | | |||||||||||||| |||||||||
Sbjct 12 AGAGAGAGAAATGATGGGTAGCTTGAAAATGGTCTTTCCACCACCTCCGGTGACAAGATT 71
Query 148 CCGGCAACGAGTAACGGCGAACGGAGATGGGTTTCCGACATTTCTTCCGAAGGAGATACA 207
||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 72 CCGGCAACGGGTAACGGCGAACGGAGATGGATTTCCGGCGTTTCTTCCGAAGGAGATACA 131
Query 208 AAACATAAAAGATCCATTCGCAAGAGCTTTAGCTCAAAGGATTGTACGAATTCCTGTTCC 267
||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GAACATAAGAGACCCATTTGCAAGAGCTTTAGCTCAAAGGATTGTACGAATTCCTGTTCC 191
Query 268 TCTTCAGATGGGAAACTTTAGAGGCAGTGTAATGAGTAGCTGTATCAAACCACTTGTTCA 327
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 192 TCTTCAGATGGGAAACTTTAGTGGCAGTGTAATGAGTAGCTGCATCAAACCACTTGTTCA 251
Query 328 ATTACACGACAAAAGTCCCGTTGTTCTTCTCCATTGTTTCGACAGTTCTTGTCTTGAATG 387
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ATTACATGACAAAAGTCCTGTTGTTCTTCTCCATTGTTTCGACAGTTCTTGTCTTGAATG 311
Query 388 GAGACGTACTTATCCTCTGCTTGAACAAGCTTGTCTTGAGACTTGGGCTATTGATGTTCT 447
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 GAGACGGACTTATCCTCTGCTTGAACAAGCTTGTCTTGAGACTTGGGCTATTGATGTTCT 371
Query 448 TGGTTGGGGATTCTCAGATCTTGAGAAACTTCCACCATGTGATGCAGCATCTAAGCGACA 507
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TGGTTGGGGTTTCTCAGATCTTGAGAAACTTCCACCATGTGATGCAGCATCTAAGCGACA 431
Query 508 TCATTTATTCGAGCTTTGGAAAACATATATCAAACGACCAATGATTTTAGTTGGACCAAG 567
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 432 CCATCTATTCGAGCTTTGGAAAACATATATCAAACGACCAATGATCTTAGTTGGACCAAG 491
Query 568 CTTAGGAGCAACCGTAGCTGTTGATTTCACTGCTACTTACCCGGAAGCTGTTGATAAATT 627
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 492 CTTAGGAGCAACCGTAGCAGTTGATTTCACTGCTACATACCCCGAAGCTGTTGATAAATT 551
Query 628 GGTTCTTATTAATGCCAATGCGTATTCAGAAGGAACCGGTCGGCTTAAAGAGTTACCAAA 687
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 552 GGTTCTTATTAATGCCAATGCGTATTCTGAAGGAACCGGTCGGCTCAAAGAGTTACCAAA 611
Query 688 ATCCATCGCTTACGCTGGGGTTAAGTTGTTAAAGTCATTCCCTCTGCGCCTTTTGGCCAA 747
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 612 ATCCATCGCTTACGCTGGGGTAAAGTTGTTAAAGTCATTCCCTCTACGCCTTTTGGCCAA 671
Query 748 TGTCCTAGCCTTTTGTTCCTCGCCCTTATCCGAGAACATAGATTGGACTAATATTGGTCG 807
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 672 CGTCTTAGCCTTTTGTTCCTCACCCTTATCCGAGAACATAGATTGGACTAATATTGGCCG 731
Query 808 GTTACATTGTCAAATGCCGTGGTGGGAGGATGCTATGGTCGATTTTATGATTAGCGGGGG 867
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 732 GTTACATTGTCAAATGCCATGGTGGGAGGATGCTATGGTCGATTTTATGATTAGTGGAGG 791
Query 868 CTATAACGTCGCGTCACACATCAAACAT-ATTGACCATAAGACGCTCGTGGTATGCAGTG 926
||||||||| |||||||||||||||| | || ||||||||||||||||| ||||||||||
Sbjct 792 CTATAACGTTGCGTCACACATCAAAC-TCATCGACCATAAGACGCTCGTTGTATGCAGTG 850
Query 927 AGAACGATCAGATAGTTAGCAACCAGCTCTCAGTTAAATTGTTGTGTGAGCTAGCAAATG 986
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AGAACGATCAGATTGTTAGCAACCAGCTCTCAGTTAAATTGTTGTGTGAGCTAGCAAATG 910
Query 987 CGGTTTTGCGGGAAGTACCAGATTCCGGTCATCTTCCACATGTTGAGAATCCTAAACACA 1046
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 911 CGGTTTTGCGGGAAGTACCAGATTCCGGTCATCTTCCACATGTTGAGAACCCTAAACACA 970
Query 1047 TTGTGAAGCTGATATCAGATTTCGCCAGTGGAAAGCTCTATTGATTCCATATACTGTAAA 1106
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 971 TTGTGAAGCTGATATCGGATTTCGCCAGTGGAAAGCTCTATTGATTCCATATACAGTAAA 1030
Query 1107 CTCTGC 1112
||||||
Sbjct 1031 CTCTGC 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5