BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39230.1
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947913 jgi|Araly1|947913|scaffold_704142.1 411 2e-114
> Ahg947913 jgi|Araly1|947913|scaffold_704142.1
Length=380
Score = 411 bits (222), Expect = 2e-114
Identities = 291/322 (90%), Gaps = 14/322 (4%)
Strand=Plus/Plus
Query 1 ATGGAGGTAATTACTTGCTTGGACTGCAAGAAACGAACCGATACGGTAATTGATTATCGA 60
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 21 ATGGAGGTAATTACTTGCTTGGACTGCAAGAAACGAACCGATACGGTTATCGACTATCGA 80
Query 61 TCTGGGGATACAATCTGCACAGAATGTGGTTTAATCCTCGATTCCCACTATATTGTCGAT 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 81 TCTGGGGATACAATCTGCACAGAATGTGGTTTAATCCTTGATTCCCACTATATTGTCGAC 140
Query 121 TCTTTTGACCGAAATATCTCATATATGACTCCTTCT---ATCAGGACCAAACACAAGGTC 177
||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
Sbjct 141 TCTTTTGACCGAAATATCTCACATATGACTCCTCCTTCCATCAGGACCAAACACAAGTT- 199
Query 178 GG-CACAAACGTTCTCATCAAGAACCCTAACCCTAAAGACAAAGCCTCCTCCATAAGCTT 236
|| |||||||||||||| | ||||||||||||||||||||||||||||| || |||||
Sbjct 200 GGACACAAACGTTCTCA--A-GAACCCTAACCCTAAAGACAAAGCCTCCTACACAAGCTC 256
Query 237 CAGGGTCTCATCACCATCTTGCTGCAGTCATTATGCTCTTCTAGAAGTAGAAGTTCATCA 296
||||||||||||||||||||||| ||||||| | ||||| ||||||| | |||||
Sbjct 257 CAGGGTCTCATCACCATCTTGCTCCAGTCATAAAGCTCTGCTAGAAG--GC----CATCA 310
Query 297 CACGAGGTTGATCGAGGAGCTA 318
| ||||||||||||||||||||
Sbjct 311 CGCGAGGTTGATCGAGGAGCTA 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12820277904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5