BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G39240.1

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947912 jgi|Araly1|947912|scaffold_704141.1                        315    2e-85


> Ahg947912 jgi|Araly1|947912|scaffold_704141.1
Length=385

 Score =  315 bits (170),  Expect = 2e-85
 Identities = 286/337 (85%), Gaps = 27/337 (8%)
 Strand=Plus/Plus

Query  1    ATGAGAATCTTGAAA-ACTCAAAGATCCAGAGGAGGAAGAAGAACAAGCAAGAAATTTGG  59
            ||||||||||| ||| |||||||||| || ||| ||| |||||| |||||||||| ||||
Sbjct  21   ATGAGAATCTT-AAAGACTCAAAGAT-CA-AGG-GGAGGAAGAAGAAGCAAGAAAATTGG  76

Query  60   AAAC---AGAA-GAA-----CA--A-GTGGAGGAGAAAAGTTCTCGGAGAAGCTTCAGGC  107
            ||||   ||||  ||     ||  | |||| |||||||||||||| ||||||||||||||
Sbjct  77   AAACAAAAGAACAAATGCTTCATCATGTGGCGGAGAAAAGTTCTCCGAGAAGCTTCAGGC  136

Query  108  GCTTAAGAGTCTTCTTCCTCCGCCGTCGAA-GATGACGGAGCAGAGTCGTCAAGATGCTT  166
            ||||||||||||||||||||||  | | || || ||||||||||| ||||||||||||||
Sbjct  137  GCTTAAGAGTCTTCTTCCTCCG--G-C-AACGACGACGGAGCAGACTCGTCAAGATGCTT  192

Query  167  ACGTGGAAGAAGATTCCAGT-GTTGGAGAGACGGAACAGTTGTTTCAAGAAACTGCGGAT  225
            ||||||| ||||||||| |  || ||| |||| ||||||||||||||||||||||| || 
Sbjct  193  ACGTGGAGGAAGATTCCGGCAGT-GGACAGACAGAACAGTTGTTTCAAGAAACTGCTGAC  251

Query  226  TACATTGTCAGACTTAGGGGACAAGTCGTGGTGTTGCAAAAGTTAATCGAGATTTATGGA  285
            ||||| ||||| ||||||  ||||||| |||||||||||||||||||| |||| ||||||
Sbjct  252  TACATCGTCAGGCTTAGGACACAAGTCATGGTGTTGCAAAAGTTAATCAAGATCTATGGA  311

Query  286  TCATCTGATCAGAA-GGAAGATAATTTTGTTTCATAA  321
            ||||||||||| || |||||||| ||| || ||||||
Sbjct  312  TCATCTGATCA-AACGGAAGATAGTTT-GTGTCATAA  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11332209933


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5