BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39250.1 Length=1031 Score E Sequences producing significant alignments: (Bits) Value Ahg494063 jgi|Araly1|494063|fgenesh2_kg.7__3496__AT5G39250.1 1118 0.0 > Ahg494063 jgi|Araly1|494063|fgenesh2_kg.7__3496__AT5G39250.1 Length=879 Score = 1118 bits (605), Expect = 0.0 Identities = 751/819 (92%), Gaps = 19/819 (2%) Strand=Plus/Plus Query 135 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 82 Query 195 TCATGTATGGGTGTTTGCAAACAATGGAGAGATATCGCAAGAGACGATTTCTACTGGAAA 254 |||||||| |||| || | ||| |||||||||||||| | |||||||| || |||||| Sbjct 83 GCATGTATGTGTGTATGTAGACAGTGGAGAGATATCGCTATTGACGATTTTTATTGGAAA 142 Query 255 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAACGGCACAAACCTCCTACTGAAACA 314 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 143 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAAAGGCATAAACCTCCTACTGAAACA 202 Query 315 TACTACAAAATGTATCAAACGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 374 || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 203 TATTACAAGATGTATCAAATGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 262 Query 375 CGATTGTCGTTCGAAAACTTGGAGTT-TTTCATCGATATTTGGTCGGAAGAGAGGCTCGT 433 |||||||||| |||||||||||||| ||| |||||||||||||| || |||| || || Sbjct 263 AGATTGTCGTTTGAAAACTTGGAGTTCTTT-ATCGATATTTGGTCAGAGGAGAAACTTGT 321 Query 434 GTTCTCGGGGTTAATACCCGGTGTTGCGTTGGAAAATGGTATCGAAACGTTACCGTTAGG 493 |||||||||||||||| ||||||||| |||||||| || ||| |||||||||||||||| Sbjct 322 TTTCTCGGGGTTAATACTCGGTGTTGCATTGGAAAAGGGGATCAAAACGTTACCGTTAGG 381 Query 494 GATCAGTAATGTTCTTAGAACTCATCTTGGTAGACCTGATTACAAGATGGTTGTTCCTGC 553 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 382 GATCAGTAATGTTCTTAGAACTCACCTTGGTAGACCTGATTATAAGATGGTTGTTCCTGC 441 Query 554 TGAGCCTAGGTTCACTATTCCGTTAAACCAGTCTGTTAGTGTCTCTGTTCTTGTGGCGA- 612 |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 442 TGAGCCTAGGTTTACTATTCCGTTAAATCAGTCGGTTAGTGTCTCTGTTCTTGTGGC-AC 500 Query 613 GGAATGATTCTG-ATAAGGTCGCTCGGATAATCAACCGGTCTGTGTTCGATTATATAGAC 671 |||||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||| Sbjct 501 GGAATGATTC-GAATAAGGTTGCTCGGATAATCAACCGGGCTGTGTTTGATTATATAGAC 559 Query 672 CGGTCATCGTATAGAGCGCTTGCGTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 731 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 560 CGTTCATCGTACAGAGCGCTTGCCTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 619 Query 732 ATCT-CCGGTATACGAGCTTGGATCTCTTTGCTGTTTATGGATGTTGAGGATATGAATGA 790 || | ||||||| |||||||||||||||||||| ||||||||||||||||||||| | | Sbjct 620 AT-TACCGGTATCCGAGCTTGGATCTCTTTGCTTTTTATGGATGTTGAGGATATG-A--A 675 Query 791 TGATGGGTTACTCGATGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 850 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 TGATGGGCCACTCGACGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 735 Query 851 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTATGA-TC 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 736 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTAAGACTC 795 Query 910 C--T-A--TTA-A-AGCTCTTTCTCAGGTTTGGAACTCT 941 | | || | |||||| |||||||||||||||||| Sbjct 796 TAATCAGGTTTTATAGCTCTCTCTCAGGTTTGGAACTCT 834 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38351654502 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5