BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39250.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494063 jgi|Araly1|494063|fgenesh2_kg.7__3496__AT5G39250.1 1118 0.0
> Ahg494063 jgi|Araly1|494063|fgenesh2_kg.7__3496__AT5G39250.1
Length=879
Score = 1118 bits (605), Expect = 0.0
Identities = 751/819 (92%), Gaps = 19/819 (2%)
Strand=Plus/Plus
Query 135 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 82
Query 195 TCATGTATGGGTGTTTGCAAACAATGGAGAGATATCGCAAGAGACGATTTCTACTGGAAA 254
|||||||| |||| || | ||| |||||||||||||| | |||||||| || ||||||
Sbjct 83 GCATGTATGTGTGTATGTAGACAGTGGAGAGATATCGCTATTGACGATTTTTATTGGAAA 142
Query 255 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAACGGCACAAACCTCCTACTGAAACA 314
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 143 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAAAGGCATAAACCTCCTACTGAAACA 202
Query 315 TACTACAAAATGTATCAAACGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 374
|| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TATTACAAGATGTATCAAATGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 262
Query 375 CGATTGTCGTTCGAAAACTTGGAGTT-TTTCATCGATATTTGGTCGGAAGAGAGGCTCGT 433
|||||||||| |||||||||||||| ||| |||||||||||||| || |||| || ||
Sbjct 263 AGATTGTCGTTTGAAAACTTGGAGTTCTTT-ATCGATATTTGGTCAGAGGAGAAACTTGT 321
Query 434 GTTCTCGGGGTTAATACCCGGTGTTGCGTTGGAAAATGGTATCGAAACGTTACCGTTAGG 493
|||||||||||||||| ||||||||| |||||||| || ||| ||||||||||||||||
Sbjct 322 TTTCTCGGGGTTAATACTCGGTGTTGCATTGGAAAAGGGGATCAAAACGTTACCGTTAGG 381
Query 494 GATCAGTAATGTTCTTAGAACTCATCTTGGTAGACCTGATTACAAGATGGTTGTTCCTGC 553
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 382 GATCAGTAATGTTCTTAGAACTCACCTTGGTAGACCTGATTATAAGATGGTTGTTCCTGC 441
Query 554 TGAGCCTAGGTTCACTATTCCGTTAAACCAGTCTGTTAGTGTCTCTGTTCTTGTGGCGA- 612
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 442 TGAGCCTAGGTTTACTATTCCGTTAAATCAGTCGGTTAGTGTCTCTGTTCTTGTGGC-AC 500
Query 613 GGAATGATTCTG-ATAAGGTCGCTCGGATAATCAACCGGTCTGTGTTCGATTATATAGAC 671
|||||||||| | ||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 501 GGAATGATTC-GAATAAGGTTGCTCGGATAATCAACCGGGCTGTGTTTGATTATATAGAC 559
Query 672 CGGTCATCGTATAGAGCGCTTGCGTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 731
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 560 CGTTCATCGTACAGAGCGCTTGCCTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 619
Query 732 ATCT-CCGGTATACGAGCTTGGATCTCTTTGCTGTTTATGGATGTTGAGGATATGAATGA 790
|| | ||||||| |||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 620 AT-TACCGGTATCCGAGCTTGGATCTCTTTGCTTTTTATGGATGTTGAGGATATG-A--A 675
Query 791 TGATGGGTTACTCGATGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 850
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGATGGGCCACTCGACGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 735
Query 851 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTATGA-TC 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 736 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTAAGACTC 795
Query 910 C--T-A--TTA-A-AGCTCTTTCTCAGGTTTGGAACTCT 941
| | || | |||||| ||||||||||||||||||
Sbjct 796 TAATCAGGTTTTATAGCTCTCTCTCAGGTTTGGAACTCT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5