BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39260.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494062 jgi|Araly1|494062|fgenesh2_kg.7__3495__AT5G39260.1 1330 0.0
Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792 521 3e-147
Ahg947909 jgi|Araly1|947909|scaffold_704138.1 187 1e-46
Ahg947908 jgi|Araly1|947908|scaffold_704137.1 115 5e-25
> Ahg494062 jgi|Araly1|494062|fgenesh2_kg.7__3495__AT5G39260.1
Length=935
Score = 1330 bits (720), Expect = 0.0
Identities = 869/940 (92%), Gaps = 13/940 (1%)
Strand=Plus/Plus
Query 1 AAGCTAAAAGT-AAAACAAAATCATCAAAGAGGGATAATAATCATGAAATTGCTAGAAAA 59
||||| ||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 AAGCT-AAAGTAAAAACAATATCATTAAAGAGGTATAATAATCATGAAATTGCTAGAAAA 59
Query 60 AATGACATATGTAGAATGTTTTATGATAATAATGGCGACATGGTTCATGTTCATAAGTTA 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 AATGACATATGTAGAATGTTTTATGATAATAATGGCGACTTGGTTCATGTTCATAAGTTA 119
Query 120 CAGTCATGGAGCCAATGTAGCTG--C-AGCACCTGGAACCAACGGACTTGATACTGCTTG 176
||||||||||| ||||||| | | | ||||||||||||||||||| |||||||||||
Sbjct 120 TGGTCATGGAGCCGATGTAGCCGAACCATCACCTGGAACCAACGGACTCGATACTGCTTG 179
Query 177 GTATGATGCGCGAGCCGCATATTATGGTGATATCCATGGTGGAGGCACTGAACTAGAAGG 236
||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 180 GTATGATGCACGAGCCACATATTATGGTGATATCCATGGTATAGGCACTGAACTAGAGGG 239
Query 237 AGCTTGTGGATACGGTGATCTAAACAAACATGGATATGGTCTAGCCACAGCAGCATTGAG 296
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AGCTTGTGGATACGGTGATCCAAACAAACATGGATATGGTCTAGCCACAGCGGCATTGAG 299
Query 297 CACGGCGCTCTTCAACAGCGGGGCCTCATGTGGGGCTTGTTACGAGATCATGTGCTCTCC 356
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 300 CACGGCGCTATTCAACAACGGGGCCACATGTGGGGCTTGTTACGAGATCATGTGCGCTCC 359
Query 357 TAATCCACAAGGATGTTTGTCCGGATCTATCAAGATCACAGCAACAGATTTATGTCCACC 416
|||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 360 TAATCCACAAGGGTGTTTGTCTGGATCCATCAAGATCACAGCAACAAATTTATGTCCACC 419
Query 417 AGGAT-CCGCTTGGTGCTACCTACCAAATAAACACTTTGATCTCTCCTTACCAATGTTCA 475
|| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AG-ATTCCACTTGGTGCAACCTACCAAATAAACACTTTGATCTCTCCTTACCAATGTTCA 478
Query 476 TCAAGATCGCTCAGGTCAAAGCCAAGATGGTCCCGGTTAGATACAGACGTGTTCCCTGTG 535
|||||||||| |||||||||||| ||| |||||| ||||||| ||||||||||| ||||
Sbjct 479 TCAAGATCGCCCAGGTCAAAGCCGGGATCGTCCCGATTAGATATAGACGTGTTCCTTGTG 538
Query 536 CGAAAACCGGTGGTGTCAAGTTTGAAGTTAAAGGAAACCCTAATATCTTAACGATCTTGC 595
| |||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
Sbjct 539 CAAAAACCGGTGGTGTCAAGTTTGAAGTTAAAGGAAACCCTAGTTTCCTAACGATCTTAC 598
Query 596 CGTACAATGTAGGAGGAGCAGGAGATATTATAGCCGTGTCTGCTAAGGGAAGCAAAACCG 655
||||||||||||||||||| |||||||||| |||||||| || |||||||||||||||||
Sbjct 599 CGTACAATGTAGGAGGAGCCGGAGATATTAAAGCCGTGTATGTTAAGGGAAGCAAAACCG 658
Query 656 CGTGGGTAGTAATGAGCAGATATTGGGGACAAAATTGGACTACTAATGTTAATCTAACCG 715
|||| ||| |||||||||| | ||||||||||| ||||| ||||||||||||||| |||
Sbjct 659 GGTGGATAGCAATGAGCAGAAACTGGGGACAAAACTGGACCACTAATGTTAATCTAGCCG 718
Query 716 GTCAAAGTGTATCATTAAGGGTTACAACGAGTGATG-GGATTACAAAGGATTTTACTGAT 774
|||| ||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 719 GTCAGAGTGTATCATTGAGGGTTACAACGAGTGATGAGG-TTACAAAAGATTTTACTGAT 777
Query 775 GTGATGCCAGCAA-GTTGGGGATTTGGGCAGACTTTTGATGGAAAGACTAACTTTTAAGA 833
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGATGCCA-CAAAGTTGGGGATTTGGGCAGACTTTTGATGGAAAGACTAACTTTTAAGA 836
Query 834 AAAATGATATGAAttttttttAGTTTTGGCTTACAAGTTACAACTAA-GAGAGATGTATT 892
||||||| |||||||||||| ||||||||| ||||||||| ||||| ||||||||||||
Sbjct 837 AAAATGAAATGAATTTTTTT-AGTTTTGGCCTACAAGTTATTACTAAAGAGAGATGTATT 895
Query 893 GGTTGCAATAATTAAAAATAAATGAAATATTGTTTATGAT 932
||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GGTTGCAATAATTAAAAATAAATGAAATATTGTTTATGAT 935
> Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792
Length=837
Score = 521 bits (282), Expect = 3e-147
Identities = 569/703 (81%), Gaps = 38/703 (5%)
Strand=Plus/Plus
Query 153 AACCAACGGACTTGATACTGCTTGGTATGATGCGCGAGCCGCATATTATGGTGATATCCA 212
|||||||||||| || ||| |||||||||| || ||||| ||| ||| |||||||||||
Sbjct 147 AACCAACGGACTCGACACTTCTTGGTATGACGCACGAGCAACATTTTACGGTGATATCCA 206
Query 213 TGGTGGAGGCACTGAACTAGAAGGAGCTTGTGGATACGGTGATCTAAACAAACATGGATA 272
|||||||| ||| ||| || ||||||||||||||||||||| || || ||| || ||
Sbjct 207 TGGTGGAGAAACTCAAC-AG--GGAGCTTGTGGATACGGTGATTTATTCAGACAAGGCTA 263
Query 273 TGGTCTAGCCACAGCAGCATTGAGCACGGCGCTCTTCAACAG-CGGGGCCTCATGTGGGG 331
||||||||||||| | ||||||||||| || |||||||| | ||| | |||||||||
Sbjct 264 TGGTCTAGCCACATCGGCATTGAGCACAGCACTCTTCAA-TGAAGGGTACACATGTGGGG 322
Query 332 CTTGTTACGAGATCATGTGCT-C-TCCTAATCCACAA-GGATGTTTGTCCGGATCTATCA 388
||||||||||||||||||| | | | ||||||||| || |||||| ||||||| || |
Sbjct 323 CTTGTTACGAGATCATGTG-TGCGAAC-AATCCACAATGG-TGTTTGCCCGGATCCATTA 379
Query 389 AGATCACAGCAACAGATTTATGT----C------CACCAGGA---TC--CGCTTGGTGCT 433
||||||| || ||| |||| ||| | ||||| | || || |||||||
Sbjct 380 AGATCACTGCTACAAATTTCTGTCCACCAAATTACACCAAAACCGTCGGCGTTTGGTGCA 439
Query 434 ACCTA-CCAAATAAACACTTTGATCTCTCCTTACCAATGTTCATCAAGATCGCTCAGGT- 491
||| | || || || || |||||||||||||||||||||||| |||||||||| || ||
Sbjct 440 ACCCACCCCAA-AAGCATTTTGATCTCTCCTTACCAATGTTCCTCAAGATCGCCCA-GTA 497
Query 492 CAAAGCCAAGATGGTCCCGGTTAGATACAGACGTGTTCCCTGTGCGAAAACCGGTGGTGT 551
|||||| | | || || |||||||||||||||||| | ||||| ||||| ||||||||
Sbjct 498 CAAAGCTGGGGTTGTTCCAGTTAGATACAGACGTGTTGCTTGTGCAAAAACTGGTGGTGT 557
Query 552 CAAGTTTGAAGTTAAAGGAAACCCTAATATCTTAACGATCTTGCCGTACAATGTAGGAGG 611
|||||||||| |||||||||||| || |||||| ||| ||||| ||||||||||||||
Sbjct 558 CAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGATATTGCCATACAATGTAGGAGG 617
Query 612 AGCAGGAGATATTATAG-CCGTGTC-TGCTAAGGGAAGCAAAACCGCGTGGGTAGTAATG 669
||| |||||||||| || |||| | | ||| |||| |||||||| |||| || ||||
Sbjct 618 AGCTGGAGATATTA-AGTTCGTG-CAAGTTAAAGGAAACAAAACCGGGTGGATAACAATG 675
Query 670 -AGCAGATATTGGGGACAAAATTGGACTACTAATGTTAA-TCTAACCGGTCAAAGTGTAT 727
| ||| |||||||||| |||||||| ||| |||||| | |||| ||||| || |||
Sbjct 676 AAAAAGA-ATTGGGGACAGAATTGGACCACTGGTGTTAAGT-TAACGGGTCAGGGTATAT 733
Query 728 CATTAAGGGTTACAACGAGTGATGGGATTACAAAGGATTTTACTGATGTGATGCCAGCAA 787
| |||||||||||||||||||||||||||||||| ||||||| | || |||||||| ||
Sbjct 734 CGTTAAGGGTTACAACGAGTGATGGGATTACAAAAGATTTTATTAATTTGATGCCAAAAA 793
Query 788 GTTGGGGATTTGGGCAGACTTTTGATGGAAAGACTAACTTTTA 830
|||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 794 ATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAATTTTTA 836
Score = 104 bits (56), Expect = 1e-21
Identities = 79/90 (88%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 43 ATGAAATTGC-TAGAAAAAATGACATATGTAGAATGTTTTATGATAATAATGGCGACATG 101
|||||| | | ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAACT-CTTAGGAAAAATGATATATGTAGAATGTTTTATGATAATAATGGCGACATG 59
Query 102 GTTCATGTTCATAAGTTACAGTCATGGAGC 131
|||| ||| ||| ||||| ||||| ||||
Sbjct 60 GTTCGTGTCCATGAGTTATGGTCATCGAGC 89
> Ahg947909 jgi|Araly1|947909|scaffold_704138.1
Length=319
Score = 187 bits (101), Expect = 1e-46
Identities = 187/228 (82%), Gaps = 8/228 (4%)
Strand=Plus/Plus
Query 608 GAGGAGCAGGAGATATTATAGCCGTGTCTG-CTAAGGGAAGCAAAACCGCGTGGGTAGTA 666
||||||| |||||||||| |||| || | | ||||||||||| || | |||| || |
Sbjct 76 GAGGAGCCGGAGATATTAAAGCCATG-CAGATTAAGGGAAGCAGGACTGGGTGGATAACA 134
Query 667 ATGAGC-AGATATTGGGGACAAAATTGGACTACT--AATGTTAATCTAACCGGTCAAAGT 723
|||| | ||| ||||||||||||| ||||| ||| || || | | |||| ||| ||
Sbjct 135 ATGATCAAGA-ATTGGGGACAAAACTGGACCACTGGTAT-TTTGT-TGACCGATCAGGGT 191
Query 724 GTATCATTAAGGGTTACAACGAGTGATGGGATTACAAAGGATTTTACTGATGTGATGCCA 783
||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 192 TTATTATTTAGGGTTATGACGAGTGATGGGATTACAAAGGATTTTACTTATGTGATTCCA 251
Query 784 GCAAGTTGGGGATTTGGGCAGACTTTTGATGGAAAGACTAACTTTTAA 831
||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 252 CCAAATTGGGGATTTGGCCAGACTTTTGATGGAAAGATTAACTTTTAA 299
> Ahg947908 jgi|Araly1|947908|scaffold_704137.1
Length=247
Score = 115 bits (62), Expect = 5e-25
Identities = 89/102 (87%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 289 GCATTGAGCACGGCGCTCTTCAACAGCGGGGCCTCATGTGGGGCTTGTTACGAGATCATG 348
||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 147 GCATTGAGCACGGCGCTCTTCAACAACGGGTACACATGTGGGGCTTGTTACGAGATCATG 206
Query 349 TGCT-CTCCTAATCCACAAGGATGTTTGTCCGGATCTATCAA 389
|| | | | | ||||||| |||||||| ||||||| |||||
Sbjct 207 TG-TGCACGTGATCCACACTGATGTTTGCCCGGATCCATCAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5