BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39280.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792 1050 0.0
Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793 824 0.0
Ahg947909 jgi|Araly1|947909|scaffold_704138.1 207 7e-53
> Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792
Length=837
Score = 1050 bits (568), Expect = 0.0
Identities = 718/790 (91%), Gaps = 11/790 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACATTGTTAGTGTCCATGAGTTACGGTCATCGAGCGATGA---TTAATGATGTA 57
||||| |||| ||| |||||||||||||| |||||||||||||||| ||| |||||||
Sbjct 49 ATGGCGACATGGTTCGTGTCCATGAGTTATGGTCATCGAGCGATGATGGTTAGTGATGTA 108
Query 58 GCCGAAGCACCCGTGTTTGACGATGTAGT---CAGCCC-A--AACGGACTCGACAGTTCT 111
||||||||||||||| ||||||||||||| ||||| | ||||||||||||| ||||
Sbjct 109 GCCGAAGCACCCGTGATTGACGATGTAGTAGGAAGCCCAACCAACGGACTCGACACTTCT 168
Query 112 TGGTATGATGCACGAGCAACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGA 171
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TGGTATGACGCACGAGCAACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGA 228
Query 172 GCGTGTGGATACGGTGATCTATTCAAACAAGGCTATGGTCTAGAGACAGCGGCATTGAGC 231
|| ||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||
Sbjct 229 GCTTGTGGATACGGTGATTTATTCAGACAAGGCTATGGTCTAGCCACATCGGCATTGAGC 288
Query 232 ACAGCACTCTTCAACGAAGGGTATACATGTGGGGCTTGTTACCAGATCATGTGTGTGAAC 291
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||
Sbjct 289 ACAGCACTCTTCAATGAAGGGTACACATGTGGGGCTTGTTACGAGATCATGTGTGCGAAC 348
Query 292 GATCCACAATGGTGTTTACCCGGATCCGTCAAGATCACAGCAACTAATTTCTGTCCACCA 351
|||||||||||||||| ||||||||| | |||||||| || || |||||||||||||||
Sbjct 349 AATCCACAATGGTGTTTGCCCGGATCCATTAAGATCACTGCTACAAATTTCTGTCCACCA 408
Query 352 GATTACAGCAAAACCGAAGGCGTTTGGTGCAACCCACCACAAAAGCACTTTGACCTCTCC 411
|||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 409 AATTACACCAAAACCGTCGGCGTTTGGTGCAACCCACCCCAAAAGCATTTTGATCTCTCC 468
Query 412 CTACCAATGTTCCTCAAGATCGCCCAATACAAAGCTGGAGTTGTCCCAGTTAAATACAGA 471
||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||
Sbjct 469 TTACCAATGTTCCTCAAGATCGCCCAGTACAAAGCTGGGGTTGTTCCAGTTAGATACAGA 528
Query 472 CGTATTTCTTGTGCAAGAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTC 531
||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CGTGTTGCTTGTGCAAAAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTC 588
Query 532 TTAATGATCTTGCCATACAATGTAGGAGGAGCTGGAGATATCAAGTT-GATGCAAGTTAA 590
|||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 589 TTAATGATATTGCCATACAATGTAGGAGGAGCTGGAGATATTAAGTTCG-TGCAAGTTAA 647
Query 591 AGGAGACAAGACCGGGTGGATAACAATGCAAAAGAACTGGGGACAAAACTGGACCACTGG 650
|||| |||| |||||||||||||||||| ||||||| |||||||| || |||||||||||
Sbjct 648 AGGAAACAAAACCGGGTGGATAACAATGAAAAAGAATTGGGGACAGAATTGGACCACTGG 707
Query 651 TGTTAATTTGACTGGTCAGGGTATTTCATTCAGGGTTACGACGAGTGATGGGGTTACAAA 710
|||||| || || ||||||||||| || || |||||||| |||||||||||| |||||||
Sbjct 708 TGTTAAGTTAACGGGTCAGGGTATATCGTTAAGGGTTACAACGAGTGATGGGATTACAAA 767
Query 711 AGATTTTAATAATGTGATGCCAAACAATTGGGGATTTGGACAGACTTTTGATGGAAAGAT 770
|||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 768 AGATTTTATTAATTTGATGCCAAAAAATTGGGGATTTGGACAGACTTTTGATGGAAAGAT 827
Query 771 TAACTTTTAG 780
||| ||||||
Sbjct 828 TAATTTTTAG 837
> Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793
Length=840
Score = 824 bits (446), Expect = 0.0
Identities = 671/778 (86%), Gaps = 22/778 (3%)
Strand=Plus/Plus
Query 20 CCATGAGTTACGGTCATCGAGCGATGATTAATGATGTAGCCGAAGCACCCG-TGT--TTG 76
||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||| ||
Sbjct 68 CCATGAGTTACGGTCATGGAGCGATGATTCATGATGCAGCCGAAGCACCCGATGTAGCTG 127
Query 77 ACG-A---TGTAGTCA--GCCCAA--ACG-GACTCGACAGTTCTTGGTATGATGCACGAG 127
| | | | | | | |||||| | | |||||||| | ||||||||| ||||| |
Sbjct 128 AAGCACCCGGGATTAATGGCCCAAGCAAGACACTCGACACTAATTGGTATGACGCACGGG 187
Query 128 CAACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGAGCGTGTGGATACGGTG 187
| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 188 CCACATTCTACGGTGACATCCATGGTGGAGAAACTCAACAGGGAGCTTGTGGATACGGTA 247
Query 188 ATCTATTCAAACAAGGCTATGGTCTAGAGACAGCGGCATTGAGCACAGCACTCTTCAACG 247
|||| || | ||||||||||||||||| ||||| || || ||||| |||||||||||||
Sbjct 248 ATCTGTTTAGACAAGGCTATGGTCTAGCCACAGCAGCGTTAAGCACGGCACTCTTCAACG 307
Query 248 AAGGGTATACATGTGGGGCTTGTTACCAGATCATGTGTGTGAACGATCCACAATGGTGTT 307
| ||||| |||||||| ||||||||| | |||||||| | | ||||||||||||||||
Sbjct 308 ACGGGTACACATGTGGCGCTTGTTACGAAATCATGTGCGCGCGTGATCCACAATGGTGTT 367
Query 308 TACCCGGATCCGTCAAGATCACAGCAACTAATTTCTGTCCACCAGATTACAGCAAAACCG 367
|||||||||| ||||||| |||||||| ||||||||||||||| |||||| ||||||||
Sbjct 368 TACCCGGATCTATCAAGATTACAGCAACAAATTTCTGTCCACCAAATTACACCAAAACCG 427
Query 368 AAGGCGTTTGGTGCAACCCACCACAAAAGCACTTTGACCTCTCCCTACCAATGTTCCTCA 427
| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 428 TTGATGTTTGGTGCAACCCACCACAAAAGCACTTTGATCTCTCTCTACCGATGTTTCTCA 487
Query 428 AGATCGCCCAA-TACAAAGCTGGAGTTGTCCCAGTTAAATACAGACGTATTTC-TTGTGC 485
|||||| |||| | ||| || || ||||||||||| | |||||||||| ||| ||||||
Sbjct 488 AGATCG-CCAAGTTCAAGGCCGGGGTTGTCCCAGTCAGATACAGACGT-GTTCTTTGTGC 545
Query 486 AAGAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGATCTTGCC 545
|| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 546 AAAAACTGGTGGAGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGGTCTTGCT 605
Query 546 ATACAATGTAGGAGGAGCTGGAGATATCAAGTT-GATGCAAGTTAAAGGAGACAAGACCG 604
||||||||||||||||||||||||| | ||||| | |||||||||||||| |||||||||
Sbjct 606 ATACAATGTAGGAGGAGCTGGAGATGTTAAGTTCG-TGCAAGTTAAAGGAAACAAGACCG 664
Query 605 GGTGGATAACAATGCAAAAGAACTGGGGACAAAACTGGACCACTGGTGTTAAT-TTGACT 663
|||||||||||||| ||||||||||||| || || |||||||||| | | | |||||
Sbjct 665 GGTGGATAACAATGAAAAAGAACTGGGGGCAGAATTGGACCACTGATAC-AGTATTGACC 723
Query 664 GGTCAGGGTATT-TCATTCAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTAATAA 722
|| || ||| || || || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 724 GGCCAAGGT-TTATCGTTTAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTATTAA 782
Query 723 TGTGATGCCAAACAATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAACTTTTAG 780
| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 783 TCTGATGCCAAAAAATTGGGGATTTGGACAGACTTTTGTTGGAAAGATTAACTTTTAG 840
> Ahg947909 jgi|Araly1|947909|scaffold_704138.1
Length=319
Score = 207 bits (112), Expect = 7e-53
Identities = 193/230 (84%), Gaps = 14/230 (6%)
Strand=Plus/Plus
Query 557 GAGGAGCTGGAGATA-TCAAGTTGATGCAAG-TTAAAGG-AGACAAGACCGGGTGGATAA 613
||||||| ||||||| | ||| |||| || |||| || || || ||| ||||||||||
Sbjct 76 GAGGAGCCGGAGATATTAAAG-CCATGC-AGATTAAGGGAAG-CAGGACTGGGTGGATAA 132
Query 614 CAATGCA-AAAGAACTGGGGACAAAACTGGACCACTGGTGTTAAT-TTGACTGGTCAGGG 671
||||| | ||||| |||||||||||||||||||||||| || | ||||| | ||||||
Sbjct 133 CAATG-ATCAAGAATTGGGGACAAAACTGGACCACTGGTATT-TTGTTGACCGATCAGGG 190
Query 672 TATT-TCATTCAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTAATAATGTGATGC 730
| || | ||| ||||||| ||||||||||||| ||||||| ||||||| | ||||||| |
Sbjct 191 T-TTATTATTTAGGGTTATGACGAGTGATGGGATTACAAAGGATTTTACTTATGTGATTC 249
Query 731 CAAAC-AATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAACTTTTA 779
| | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 250 C-ACCAAATTGGGGATTTGGCCAGACTTTTGATGGAAAGATTAACTTTTA 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5