BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39290.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793 1090 0.0
Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792 787 0.0
> Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793
Length=840
Score = 1090 bits (590), Expect = 0.0
Identities = 730/797 (92%), Gaps = 12/797 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATGTGGGTCGTGCCAATGAGTTACGGTCATGGAGCGATGATTGGTAATGCAGTC 60
|||||| |||||||||| || ||||||||||||||||||||||||||| | |||||| |
Sbjct 49 ATGGCGGTGTGGGTCGTACCCATGAGTTACGGTCATGGAGCGATGATTCATGATGCAGCC 108
Query 61 GAAGCACCTGATGTAGCCGAAGCACCCGGGATTAATGACCCAAGCAAGGCACTCGACCCT 120
|||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 109 GAAGCACCCGATGTAGCTGAAGCACCCGGGATTAATGGCCCAAGCAAGACACTCGACACT 168
Query 121 AATTGGTATGACGCACGAGCCACGTTCTACGGTGACATCCATGGTGGAGACACTCAACAG 180
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 169 AATTGGTATGACGCACGGGCCACATTCTACGGTGACATCCATGGTGGAGAAACTCAACAG 228
Query 181 GGAGCTTGTGGATACGGTAATCTATTCAGACAAGGCTATGGTCTAGCCACAGCAGCGTTA 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 229 GGAGCTTGTGGATACGGTAATCTGTTTAGACAAGGCTATGGTCTAGCCACAGCAGCGTTA 288
Query 241 AGTACGGCACTCTTCAACGACGGGTACACATGTGGGGCTTGTTATGAAATCATGTGCACG 300
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 289 AGCACGGCACTCTTCAACGACGGGTACACATGTGGCGCTTGTTACGAAATCATGTGCGCG 348
Query 301 CGTGATCCACAATGGTGTTTACCCGGATCCGTCAAGATCACAGCAACAAACTTCTGTCC- 359
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 349 CGTGATCCACAATGGTGTTTACCCGGATCTATCAAGATTACAGCAACAAATTTCTGTCCA 408
Query 360 CGCAAATTACAGCAAAACCACAGACCTTTGGTGCAATCCACCACAGAAA-CACTTTGATC 418
| ||||||||| ||||||| || |||||||||| |||||||| ||| ||||||||||
Sbjct 409 C-CAAATTACACCAAAACCGTTGATGTTTGGTGCAACCCACCACA-AAAGCACTTTGATC 466
Query 419 TCTCCT-TAGCAATGTTTCTCAAGATTGCCAAGTACAAAGCCGGGGTTGTCCCAGTTAGA 477
||| || || | |||||||||||||| ||||||| ||| ||||||||||||||||| |||
Sbjct 467 TCT-CTCTACCGATGTTTCTCAAGATCGCCAAGTTCAAGGCCGGGGTTGTCCCAGTCAGA 525
Query 478 TACAGACGTATTCCTTGTAGC-AAAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCC 536
||||||||| ||| |||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 526 TACAGACGTGTTCTTTGT-GCAAAAACTGGTGGAGTCAAGTTTGAAACCAAAGGAAACCC 584
Query 537 TTATTTCTTAATGGTCTTGATATACAACGTAGGAGGAGCTGGAGATATTAAGTACGTGCA 596
||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||
Sbjct 585 TTATTTCTTAATGGTCTTGCTATACAATGTAGGAGGAGCTGGAGATGTTAAGTTCGTGCA 644
Query 597 AGTTAAAGAAAACAAGACCGGGTGGATAACAATGAAAAAGAACTGGGGGCAGAATTGGAC 656
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AGTTAAAGGAAACAAGACCGGGTGGATAACAATGAAAAAGAACTGGGGGCAGAATTGGAC 704
Query 657 CACT-AGTACAGTATTGACCGGCCAAGGTTTGTCGTTCAGAGTTACGACGACTGATGGGA 715
|||| | |||||||||||||||||||||||| ||||| || |||||||||| |||||||
Sbjct 705 CACTGA-TACAGTATTGACCGGCCAAGGTTTATCGTTTAGGGTTACGACGAGTGATGGGG 763
Query 716 TTACAAAAGATTTT-TGGAATGTGATGCCAAAAAATTGGGGATTTGGACAGACTTTTGAT 774
|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 764 TTACAAAAGATTTTATT-AATCTGATGCCAAAAAATTGGGGATTTGGACAGACTTTTGTT 822
Query 775 GGTAAGATTAACTTTTA 791
|| ||||||||||||||
Sbjct 823 GGAAAGATTAACTTTTA 839
> Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792
Length=837
Score = 787 bits (426), Expect = 0.0
Identities = 685/806 (85%), Gaps = 33/806 (4%)
Strand=Plus/Plus
Query 1 ATGGCGATGTGGGTCGTG-CCAATGAGTTACGGTCATGGAGCGATGATTGG-TA---ATG 55
||||||| ||| ||||| || |||||||| |||||| ||||||||| ||| || |||
Sbjct 49 ATGGCGACATGGTTCGTGTCC-ATGAGTTATGGTCATCGAGCGATGA-TGGTTAGTGATG 106
Query 56 CAGTCGAAGCA-CC-TGATGTAGCCGAAGCACCCGGGATTAATGACCCAAGCAA-GGCAC 112
|| ||||||| || |||| | | ||| | | | | || | ||||| ||| || ||
Sbjct 107 TAGCCGAAGCACCCGTGAT-T-GACGATGTA----GTAGGAA-G-CCCAACCAACGG-AC 157
Query 113 TCGACCCTAATTGGTATGACGCACGAGCCACGTTCTACGGTGACATCCATGGTGGAGACA 172
||||| || |||||||||||||||||| || || |||||||| |||||||||||||| |
Sbjct 158 TCGACACTTCTTGGTATGACGCACGAGCAACATTTTACGGTGATATCCATGGTGGAGAAA 217
Query 173 CTCAACAGGGAGCTTGTGGATACGGTAATCTATTCAGACAAGGCTATGGTCTAGCCACAG 232
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 218 CTCAACAGGGAGCTTGTGGATACGGTGATTTATTCAGACAAGGCTATGGTCTAGCCACAT 277
Query 233 CAGCGTTAAGTACGGCACTCTTCAACGACGGGTACACATGTGGGGCTTGTTATGAAATCA 292
| || || || || ||||||||||| || ||||||||||||||||||||||| || ||||
Sbjct 278 CGGCATTGAGCACAGCACTCTTCAATGAAGGGTACACATGTGGGGCTTGTTACGAGATCA 337
Query 293 TGTGCACGCGTGATCCACAATGGTGTTTACCCGGATCCGTCAAGATCACAGCAACAAACT 352
|||| || |||||||||||||||| ||||||||| | |||||||| || ||||| |
Sbjct 338 TGTGTGCGAACAATCCACAATGGTGTTTGCCCGGATCCATTAAGATCACTGCTACAAATT 397
Query 353 TCTGTCC-CGCAAATTACAGCAAAACC-ACAGACCTTTGGTGCAATCCACCACAGAAA-C 409
||||||| | ||||||||| ||||||| | | | |||||||||| ||||| || ||| |
Sbjct 398 TCTGTCCAC-CAAATTACACCAAAACCGTC-GGCGTTTGGTGCAACCCACCCCA-AAAGC 454
Query 410 ACTTTGATCTCTCCTTAGCAATGTTTCTCAAGATTGCCAAGTACAAAGCCGGGGTTGTCC 469
| ||||||||||||||| ||||||| |||||||| ||| |||||||||| |||||||| |
Sbjct 455 ATTTTGATCTCTCCTTACCAATGTTCCTCAAGATCGCCCAGTACAAAGCTGGGGTTGTTC 514
Query 470 CAGTTAGATACAGACGTATTCCTTGTAGC-AAAACTGGTGGTGTCAAGTTTGAAACCAAA 528
||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct 515 CAGTTAGATACAGACGTGTTGCTTGT-GCAAAAACTGGTGGTGTCAAGTTTGAAACCAAA 573
Query 529 GGAAACCCTTATTTCTTAATGGTCTTGATATACAACGTAGGAGGAGCTGGAGATATTAAG 588
||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||
Sbjct 574 GGAAACCCTTATTTCTTAATGATATTGCCATACAATGTAGGAGGAGCTGGAGATATTAAG 633
Query 589 TACGTGCAAGTTAAAGAAAACAAGACCGGGTGGATAACAATGAAAAAGAACTGGGGGCAG 648
| |||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 634 TTCGTGCAAGTTAAAGGAAACAAAACCGGGTGGATAACAATGAAAAAGAATTGGGGACAG 693
Query 649 AATTGGACCACTAGTAC-A-GTATTGACCGGCCAAGGTTTGTCGTTCAGAGTTACGACGA 706
|||||||||||| || | || | || || || ||| | ||||| || ||||| ||||
Sbjct 694 AATTGGACCACTGGTGTTAAGT-TA-ACGGGTCAGGGTATATCGTTAAGGGTTACAACGA 751
Query 707 CTGATGGGATTACAAAAGATTTT-TGGAATGTGATGCCAAAAAATTGGGGATTTGGACAG 765
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 752 GTGATGGGATTACAAAAGATTTTATT-AATTTGATGCCAAAAAATTGGGGATTTGGACAG 810
Query 766 ACTTTTGATGGTAAGATTAACTTTTA 791
||||||||||| |||||||| |||||
Sbjct 811 ACTTTTGATGGAAAGATTAATTTTTA 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5