BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39300.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792 1059 0.0
Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793 826 0.0
Ahg947909 jgi|Araly1|947909|scaffold_704138.1 202 3e-51
> Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792
Length=837
Score = 1059 bits (573), Expect = 0.0
Identities = 719/790 (91%), Gaps = 8/790 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACATTGTTAGTGTCCATGAGTTACGGTCATCGAGCGATGA---TTAATGATGTA 57
||||| |||| ||| |||||||||||||| |||||||||||||||| ||| |||||||
Sbjct 49 ATGGCGACATGGTTCGTGTCCATGAGTTATGGTCATCGAGCGATGATGGTTAGTGATGTA 108
Query 58 GCCGAAGCACCCGTGATTGAC-A-AT-GTAGGCAGCCCAACCAACGGACTCGACAGTTCT 114
||||||||||||||||||||| | | ||||| |||||||||||||||||||||| ||||
Sbjct 109 GCCGAAGCACCCGTGATTGACGATGTAGTAGGAAGCCCAACCAACGGACTCGACACTTCT 168
Query 115 TGGTATGATGCACGAGCAACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGA 174
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TGGTATGACGCACGAGCAACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGA 228
Query 175 GCCTGTGGATACGGTGATTTATTCAAACAAGGCTATGGTCTAGAGACAGCGGCATTGAGC 234
|| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 229 GCTTGTGGATACGGTGATTTATTCAGACAAGGCTATGGTCTAGCCACATCGGCATTGAGC 288
Query 235 ACAGCACTCTTCAACGAAGGGTATACATGTGGGGCTTGTTACCAGATCATGTGTGTGCAC 294
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||| | ||
Sbjct 289 ACAGCACTCTTCAATGAAGGGTACACATGTGGGGCTTGTTACGAGATCATGTGTGCGAAC 348
Query 295 GACCCACAATGGTGTTTACCCGGAACCATCAAGATTACAGCAACAAATTTCTGTCCACCA 354
| |||||||||||||| |||||| |||| ||||| || || ||||||||||||||||||
Sbjct 349 AATCCACAATGGTGTTTGCCCGGATCCATTAAGATCACTGCTACAAATTTCTGTCCACCA 408
Query 355 GATTACTCCAAAACCGAAGGCGTTTGGTGCAACCCACCACAAAAGCACTTTGACCTCTCC 414
||||| ||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 409 AATTACACCAAAACCGTCGGCGTTTGGTGCAACCCACCCCAAAAGCATTTTGATCTCTCC 468
Query 415 CTACCAATGTTCCTCAAGATCGCCCAATACAAAGCTGGAGTTGTCCCAGTTAAATACAGA 474
||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||
Sbjct 469 TTACCAATGTTCCTCAAGATCGCCCAGTACAAAGCTGGGGTTGTTCCAGTTAGATACAGA 528
Query 475 CGTATTTCTTGTGCAAGAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTC 534
||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CGTGTTGCTTGTGCAAAAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTC 588
Query 535 TTAATGATCTTGCCATACAATGTAGGAGGCGCTGGAGATATCAAGTT-GATGCAAGTTAA 593
|||||||| |||||||||||||||||||| ||||||||||| ||||| | ||||||||||
Sbjct 589 TTAATGATATTGCCATACAATGTAGGAGGAGCTGGAGATATTAAGTTCG-TGCAAGTTAA 647
Query 594 AGGAGACAAGACCGGGTGGATAACAATGCAAAAGAACTGGGGACAAAACTGGACCACTGG 653
|||| |||| |||||||||||||||||| ||||||| |||||||| || |||||||||||
Sbjct 648 AGGAAACAAAACCGGGTGGATAACAATGAAAAAGAATTGGGGACAGAATTGGACCACTGG 707
Query 654 TGTTAATTTGACTGGTCAGGGTATTTCATTCAGGGTTACGACGAGTGATGGGGTTACAAA 713
|||||| || || ||||||||||| || || |||||||| |||||||||||| |||||||
Sbjct 708 TGTTAAGTTAACGGGTCAGGGTATATCGTTAAGGGTTACAACGAGTGATGGGATTACAAA 767
Query 714 AGATTTTAATAATGTGATGCCAAACAATTGGGGATTTGGACAGACTTTTGATGGAAAGAT 773
|||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 768 AGATTTTATTAATTTGATGCCAAAAAATTGGGGATTTGGACAGACTTTTGATGGAAAGAT 827
Query 774 TAACTTTTAG 783
||| ||||||
Sbjct 828 TAATTTTTAG 837
> Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793
Length=840
Score = 826 bits (447), Expect = 0.0
Identities = 672/779 (86%), Gaps = 21/779 (3%)
Strand=Plus/Plus
Query 20 CCATGAGTTACGGTCATCGAGCGATGATTAATGATGTAGCCGAAGCACCCG-TG-A-TTG 76
||||||||||||||||| ||||||||||| |||||| |||||||||||||| || | ||
Sbjct 68 CCATGAGTTACGGTCATGGAGCGATGATTCATGATGCAGCCGAAGCACCCGATGTAGCTG 127
Query 77 -A-CA--ATGTAGGCA--GCCCAACCAACG-GACTCGACAGTTCTTGGTATGATGCACGA 129
| || | | | |||||| ||| | |||||||| | ||||||||| |||||
Sbjct 128 AAGCACCCGGGATTAATGGCCCAAGCAA-GACACTCGACACTAATTGGTATGACGCACGG 186
Query 130 GCAACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGAGCCTGTGGATACGGT 189
|| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 187 GCCACATTCTACGGTGACATCCATGGTGGAGAAACTCAACAGGGAGCTTGTGGATACGGT 246
Query 190 GATTTATTCAAACAAGGCTATGGTCTAGAGACAGCGGCATTGAGCACAGCACTCTTCAAC 249
|| | || | ||||||||||||||||| ||||| || || ||||| ||||||||||||
Sbjct 247 AATCTGTTTAGACAAGGCTATGGTCTAGCCACAGCAGCGTTAAGCACGGCACTCTTCAAC 306
Query 250 GAAGGGTATACATGTGGGGCTTGTTACCAGATCATGTGTGTGCACGACCCACAATGGTGT 309
|| ||||| |||||||| ||||||||| | |||||||| | || || ||||||||||||
Sbjct 307 GACGGGTACACATGTGGCGCTTGTTACGAAATCATGTGCGCGCGTGATCCACAATGGTGT 366
Query 310 TTACCCGGAACCATCAAGATTACAGCAACAAATTTCTGTCCACCAGATTACTCCAAAACC 369
||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 367 TTACCCGGATCTATCAAGATTACAGCAACAAATTTCTGTCCACCAAATTACACCAAAACC 426
Query 370 GAAGGCGTTTGGTGCAACCCACCACAAAAGCACTTTGACCTCTCCCTACCAATGTTCCTC 429
| | |||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||
Sbjct 427 GTTGATGTTTGGTGCAACCCACCACAAAAGCACTTTGATCTCTCTCTACCGATGTTTCTC 486
Query 430 AAGATCGCCCAA-TACAAAGCTGGAGTTGTCCCAGTTAAATACAGACGTATTTC-TTGTG 487
||||||| |||| | ||| || || ||||||||||| | |||||||||| ||| |||||
Sbjct 487 AAGATCG-CCAAGTTCAAGGCCGGGGTTGTCCCAGTCAGATACAGACGT-GTTCTTTGTG 544
Query 488 CAAGAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGATCTTGC 547
||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 545 CAAAAACTGGTGGAGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGGTCTTGC 604
Query 548 CATACAATGTAGGAGGCGCTGGAGATATCAAGTT-GATGCAAGTTAAAGGAGACAAGACC 606
||||||||||||||| ||||||||| | ||||| | |||||||||||||| ||||||||
Sbjct 605 TATACAATGTAGGAGGAGCTGGAGATGTTAAGTTCG-TGCAAGTTAAAGGAAACAAGACC 663
Query 607 GGGTGGATAACAATGCAAAAGAACTGGGGACAAAACTGGACCACTGGTGTTAAT-TTGAC 665
||||||||||||||| ||||||||||||| || || |||||||||| | | | |||||
Sbjct 664 GGGTGGATAACAATGAAAAAGAACTGGGGGCAGAATTGGACCACTGATAC-AGTATTGAC 722
Query 666 TGGTCAGGGTATT-TCATTCAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTAATA 724
|| || ||| || || || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 723 CGGCCAAGGT-TTATCGTTTAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTATTA 781
Query 725 ATGTGATGCCAAACAATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAACTTTTAG 783
|| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 782 ATCTGATGCCAAAAAATTGGGGATTTGGACAGACTTTTGTTGGAAAGATTAACTTTTAG 840
> Ahg947909 jgi|Araly1|947909|scaffold_704138.1
Length=319
Score = 202 bits (109), Expect = 3e-51
Identities = 192/230 (83%), Gaps = 14/230 (6%)
Strand=Plus/Plus
Query 560 GAGGCGCTGGAGATA-TCAAGTTGATGCAAG-TTAAAGG-AGACAAGACCGGGTGGATAA 616
|||| || ||||||| | ||| |||| || |||| || || || ||| ||||||||||
Sbjct 76 GAGGAGCCGGAGATATTAAAG-CCATGC-AGATTAAGGGAAG-CAGGACTGGGTGGATAA 132
Query 617 CAATGCA-AAAGAACTGGGGACAAAACTGGACCACTGGTGTTAAT-TTGACTGGTCAGGG 674
||||| | ||||| |||||||||||||||||||||||| || | ||||| | ||||||
Sbjct 133 CAATG-ATCAAGAATTGGGGACAAAACTGGACCACTGGTATT-TTGTTGACCGATCAGGG 190
Query 675 TATT-TCATTCAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTAATAATGTGATGC 733
| || | ||| ||||||| ||||||||||||| ||||||| ||||||| | ||||||| |
Sbjct 191 T-TTATTATTTAGGGTTATGACGAGTGATGGGATTACAAAGGATTTTACTTATGTGATTC 249
Query 734 CAAAC-AATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAACTTTTA 782
| | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 250 C-ACCAAATTGGGGATTTGGCCAGACTTTTGATGGAAAGATTAACTTTTA 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5