BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39310.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356074 jgi|Araly1|356074|fgenesh1_pg.C_scaffold_7003247 1315 0.0
Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793 479 2e-134
Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792 468 3e-131
Ahg494062 jgi|Araly1|494062|fgenesh2_kg.7__3495__AT5G39260.1 337 1e-91
> Ahg356074 jgi|Araly1|356074|fgenesh1_pg.C_scaffold_7003247
Length=936
Score = 1315 bits (712), Expect = 0.0
Identities = 837/896 (93%), Gaps = 13/896 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATATGGATTGCACCTATGACTA-ACGGTCATGATCATGCAAGCCACGTACCCGG 59
|||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||
Sbjct 49 ATGGTGATATGGATAGCACCTATGAC-ATACGGTCATGGTCATGCAACCCACGTACCCGG 107
Query 60 TGGAAGACCCGGTgcccacccatcccatggcgcccacccagcccatggcgcccacccatc 119
||||||| || | |||||||||| | ||| |||||||| ||||||| |||||||| ||
Sbjct 108 TGGAAGAACC-G-GCCCACCCATGAC-TGGTGCCCACCCTTCCCATGGTGCCCACCCTTC 164
Query 120 ccatggtgct-cacccatcccatgg-tgcccacccatcccatggtgctcacccatcccat 177
|||||| | | |||||||||||||| | |||| || |||||||| || ||||||||||||
Sbjct 165 CCATGGCG-TCCACCCATCCCATGGCT-CCCAACCTTCCCATGGCGCCCACCCATCCCAT 222
Query 178 ggcgccc-tcccatcccatggTGGCCAAGTGCCGCATTCTGGTTGGGGTCATGGCCGTGC 236
||||||| | ||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 223 GGCGCCCAT-CCATCCCATGGCGGCCTTGGGCCGCATTCTGGTTGGGGTCATGGCCGTGC 281
Query 237 CACATTCTACGGTGACATCAATGGTGGAGAAACTCAACAGGGAGCTTGTGGATATGGTGA 296
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CACATTTTACGGTGACATCAATGGTGGAGAAACTCAACAGGGAGCTTGTGGATATGGTGA 341
Query 297 TCTACACAAACAAGGATATGGTCTAGAGACCGCAGCACTAAGCACCGCACTATTTAACAA 356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 342 TCTACACAAACAAGGATATGGTCTAGAGACAGCAGCACTAAGCACCGCACTATTTAACAA 401
Query 357 CGGCTCAAGGTGTGGGGCTTGTTACGAGATCATGTGCGAACACGCTCCACAATGGTGTTT 416
||||||||||||||||||||||| |||||||| ||||| | | |||||||||||||||||
Sbjct 402 CGGCTCAAGGTGTGGGGCTTGTTTCGAGATCAAGTGCGTAGATGCTCCACAATGGTGTTT 461
Query 417 GCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTT-TACCAAGCCCA 475
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 462 GCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTTCT-CCAAGCCCA 520
Query 476 ATGACAATTGGTGCAACCCGCCACAAAAACACTTTGATCTCTCGCAACCAATGTTCCTCA 535
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AAGACTGTTGGTGCAACCCGCCACAAAAACACTTTGATCTCTCGCAACCAATGTTCCTCA 580
Query 536 AAATAGCTAAATACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTCCTTGTGCGA 595
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AAATTGCCAAATACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTCCTTGTGCGA 640
Query 596 AAATCGGAGGTGTCAAGTTTGAAATCAAGGGAAATCCTCATTTCTTAATGATCTTACCGT 655
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 641 AAATCGGAGGTGTCAAGTTTGAAATCAAGGGAAACCCTCATTTCTTAATGATCTTACCGT 700
Query 656 ACAATGTAGGAGGAGCTGGAGCTGTTAGGGCTATGCAAATTAAGGGAACAAGGACCCAGT 715
||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||| |||
Sbjct 701 ACAATGTAGGAGGAGCTGGAGATGTTAGGGCCATGCAAGTTAAGGGAACGAGGACCGAGT 760
Query 716 GGATTGCGATGAAGAAGAATTGGGGACAGATTTGGAGCACTGGTGTTGTGTTGACCGGAC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GGATTGCGATGAAGAAGAATTGGGGACAGATTTGGAGCACTGGTGTTGTGTTGACCGGAC 820
Query 776 AATGTTTATCGTTTAGGCTTACCACAAGTGATGGAGTTATGAAAGAGTTTATTGATGTTA 835
||||||||||||||||| |||| |||||||||||| ||| ||||||||||||||| ||||
Sbjct 821 AATGTTTATCGTTTAGGGTTACGACAAGTGATGGAATTACGAAAGAGTTTATTGACGTTA 880
Query 836 CACCGCCGGACTGGAAATGTAATGGACAGAGTTTTGATGGAAAGGTTAATTTTTAG 891
| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 881 CCCCGCCGGATTGGAAATGTAATGGACAGAGTTTTGATGGAAAGATTAATTTTTAG 936
> Ahg330566 jgi|Araly1|330566|fgenesh1_pm.C_scaffold_7002793
Length=840
Score = 479 bits (259), Expect = 2e-134
Identities = 530/662 (80%), Gaps = 13/662 (2%)
Strand=Plus/Plus
Query 235 GCCACATTCTACGGTGACATCAATGGTGGAGAAACTCAACAGGGAGCTTGTGGATATGGT 294
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 187 GCCACATTCTACGGTGACATCCATGGTGGAGAAACTCAACAGGGAGCTTGTGGATACGGT 246
Query 295 GATCTACACAAACAAGGATATGGTCTAGAGACCGCAGCACTAAGCACCGCACTATTTAAC 354
|||| | |||||| |||||||||| || ||||| ||||||| ||||| || |||
Sbjct 247 AATCTGTTTAGACAAGGCTATGGTCTAGCCACAGCAGCGTTAAGCACGGCACTCTTCAAC 306
Query 355 AACGGCT-CA-AGGTGTGGGGCTTGTTACGAGATCATGTGCGAACACGCTCCACAATGGT 412
|||| | || | ||||| ||||||||||| |||||||||| | | |||||||||||
Sbjct 307 GACGGGTACACA--TGTGGCGCTTGTTACGAAATCATGTGCGCGCGTGATCCACAATGGT 364
Query 413 GTTTGCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTTTACCAAGC 472
|||| || || || |||||||| ||||| ||||| |||||||||||| ||| |||||
Sbjct 365 GTTTACCCGGATCTATCAAGATTACAGCAACAAATTTCTGTCCACCAAATTACACCAAAA 424
Query 473 CCAATGACAATTGGTGCAACCCGCCACAAAAACACTTTGATCTCTCGCAACCAATGTTCC 532
|| ||| |||||||||||| |||||||| |||||||||||||| | ||| ||||| |
Sbjct 425 CCGTTGATGTTTGGTGCAACCCACCACAAAAGCACTTTGATCTCTCTCTACCGATGTTTC 484
Query 533 TCAAAATAGCTAAATACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTCCTTGTG 592
|||| || || || | ||| |||||||||||||| || | || |||||||||| |||||
Sbjct 485 TCAAGATCGCCAAGTTCAAGGCCGGGGTTGTCCCAGTCAGATACAGACGTGTTCTTTGTG 544
Query 593 CGAAAA-TCGGAGGTGTCAAGTTTGAAATCAAGGGAAATCCTCATTTCTTAATGATCTTA 651
| |||| | || || ||||||||||||| ||| ||||| ||| ||||||||||| ||||
Sbjct 545 CAAAAACT-GGTGGAGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGGTCTTG 603
Query 652 CCGTACAATGTAGGAGGAGCTGGAGCTGTTAGGG-CTATGCAAATTAAGGGAA-CAAGGA 709
| |||||||||||||||||||||| ||||| | | ||||| |||| |||| |||| |
Sbjct 604 CTATACAATGTAGGAGGAGCTGGAGATGTTAAGTTCG-TGCAAGTTAAAGGAAACAAG-A 661
Query 710 CCCAGTGGATTGCGATGAAGAAGAATTGGGGACAGATTTGGAGCACTGGTGTTGTGTTGA 769
|| |||||| | ||||| ||||| ||||| |||| ||||| ||||| | || ||||
Sbjct 662 CCGGGTGGATAACAATGAAAAAGAACTGGGGGCAGAATTGGACCACTGATACAGTATTGA 721
Query 770 CCGGACAATGTTTATCGTTTAGGCTTACCACAAGTGATGGAGTTATGAAAGAGTTTATTG 829
|||| ||| |||||||||||||| |||| || |||||||| |||| ||||| ||||||
Sbjct 722 CCGGCCAAGGTTTATCGTTTAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTATTA 781
Query 830 ATGTTACACCGCCGGACTGGAAATGTAATGGACAGAGTTTTGATGGAAAGGTTAATTTTT 889
|| | | || | ||| || | |||||||| ||||| ||||||| |||| ||||
Sbjct 782 ATCTGATGCCAAAAAATTGGGGAT-T--TGGACAGACTTTTGTTGGAAAGATTAACTTTT 838
Query 890 AG 891
||
Sbjct 839 AG 840
> Ahg330565 jgi|Araly1|330565|fgenesh1_pm.C_scaffold_7002792
Length=837
Score = 468 bits (253), Expect = 3e-131
Identities = 533/666 (80%), Gaps = 27/666 (4%)
Strand=Plus/Plus
Query 238 ACATTCTACGGTGACATCAATGGTGGAGAAACTCAACAGGGAGCTTGTGGATATGGTGAT 297
||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 187 ACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGAGCTTGTGGATACGGTGAT 246
Query 298 CTACACAAACAAGGATATGGTCTAGAGACCGCAGCACTAAGCACCGCACTATTTAAC-AA 356
|| || |||||| |||||||||| || | ||| | ||||| ||||| || || ||
Sbjct 247 TTATTCAGACAAGGCTATGGTCTAGCCACATCGGCATTGAGCACAGCACTCTTCAATGAA 306
Query 357 CGGCT-CA-AGGTGTGGGGCTTGTTACGAGATCATGTG--CGAACACGCTCCACAATGGT 412
|| | || | |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 307 GGG-TACACA--TGTGGGGCTTGTTACGAGATCATGTGTGCGAACAA--TCCACAATGGT 361
Query 413 GTTTGCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTTTACCAAGC 472
||||||| || ||||| |||||||| |||||||| |||||||||||| ||| |||||
Sbjct 362 GTTTGCCCGGATCCATTAAGATCACTGCTACAAATTTCTGTCCACCAAATTACACCAAAA 421
Query 473 CCAAT-GACAATTGGTGCAACCCGCCACAAAAACACTTTGATCTCTCGCA-ACCAATGTT 530
|| | | | |||||||||||| || ||||| || ||||||||||| | |||||||||
Sbjct 422 CCG-TCGGCGTTTGGTGCAACCCACCCCAAAAGCATTTTGATCTCTC-CTTACCAATGTT 479
Query 531 CCTCAAAATAGCTAAATACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTCCTTG 590
|||||| || || | |||||||| |||||||| || |||| || ||||||||| ||||
Sbjct 480 CCTCAAGATCGCCCAGTACAAAGCTGGGGTTGTTCCAGTTAGATACAGACGTGTTGCTTG 539
Query 591 TGCGAAAA-TCGGAGGTGTCAAGTTTGAAATCAAGGGAAATCCTCATTTCTTAATGATCT 649
||| |||| | || |||||||||||||||| ||| ||||| ||| ||||||||||||| |
Sbjct 540 TGCAAAAACT-GGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGATAT 598
Query 650 TACCGTACAATGTAGGAGGAGCTGGAGCTGTTAGGG-CTATGCAAATTAAGGGAA-CAAG 707
| || |||||||||||||||||||||| | ||| | | ||||| |||| |||| |||
Sbjct 599 TGCCATACAATGTAGGAGGAGCTGGAGATATTAAGTTCG-TGCAAGTTAAAGGAAACAAA 657
Query 708 GACCCAGTGGATTGCGATGAAGAAGAATTGGGGACAGATTTGGAGCACTGGTGTTGTGTT 767
||| |||||| | ||||| |||||||||||||||| ||||| |||||||||| |||
Sbjct 658 -ACCGGGTGGATAACAATGAAAAAGAATTGGGGACAGAATTGGACCACTGGTGTTAAGTT 716
Query 768 GACCGGACAATGTTTATCGTTTAGGCTTACCACAAGTGATGG-AGTTATGAAAGAGTTTA 826
|| || || || ||||||| ||| |||| || |||||||| | ||| ||||| ||||
Sbjct 717 AACGGGTCAGGGTATATCGTTAAGGGTTACAACGAGTGATGGGA-TTACAAAAGATTTTA 775
Query 827 TTGATGTT-ACACCGCCGGACTGGAAATGTAATGGACAGAGTTTTGATGGAAAGGTTAAT 885
|| || || | || | ||| || | |||||||| ||||||||||||| |||||
Sbjct 776 TTAAT-TTGATGCCAAAAAATTGGGGAT-T--TGGACAGACTTTTGATGGAAAGATTAAT 831
Query 886 TTTTAG 891
||||||
Sbjct 832 TTTTAG 837
> Ahg494062 jgi|Araly1|494062|fgenesh2_kg.7__3495__AT5G39260.1
Length=935
Score = 337 bits (182), Expect = 1e-91
Identities = 476/613 (78%), Gaps = 40/613 (7%)
Strand=Plus/Plus
Query 235 GCCACAT-TCTACGGTGACATCAATGGTGGAGAAACTCAAC---AGGGAGCTTGTGGATA 290
||||||| | || ||||| ||| ||||| || ||| ||| ||||||||||||||||
Sbjct 193 GCCACATAT-TATGGTGATATCCATGGTATAGGCACTGAACTAGAGGGAGCTTGTGGATA 251
Query 291 TGGTGATCTACACAAACAAGGATATGGTCTAGAGACCGCAGCACTAAGCACCGCACTATT 350
||||||| | ||||||| ||||||||||||| || || ||| | ||||| || |||||
Sbjct 252 CGGTGATCCAAACAAACATGGATATGGTCTAGCCACAGCGGCATTGAGCACGGCGCTATT 311
Query 351 TAACAACGGCTCAAGGTGTGGGGCTTGTTACGAGATCATGTGCGAACACGC-TCCACAAT 409
|||||||| | | |||||||||||||||||||||||||||| | | |||||||
Sbjct 312 CAACAACGGGGCCACATGTGGGGCTTGTTACGAGATCATGTGCGCTC-CTAATCCACAAG 370
Query 410 GGTGTTTGCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTTTACCA 469
|||||||| | || ||||||||||||||||| ||||| || ||||||||||||| |||
Sbjct 371 GGTGTTTGTCTGGATCCATCAAGATCACAGCAACAAATTTATGTCCACCAGATT---CCA 427
Query 470 AGCCCAATGACAATTGGTGCAACCCGCCACAA-AAACACTTTGATCTCTCGCA-ACCAAT 527
| | | ||||||||| ||| || ||||||||||||||||| | ||||||
Sbjct 428 --C----T-----T-GGTGCAACCTACCA-AATAAACACTTTGATCTCTC-CTTACCAAT 473
Query 528 GTTCCTCAAAATAGCTAAA-TACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTC 586
|||| |||| || || | | |||||||||| | |||||| ||| || |||||||||||
Sbjct 474 GTTCATCAAGATCGCCCAGGT-CAAAGCCGGGATCGTCCCGATTAGATATAGACGTGTTC 532
Query 587 CTTGTGCGAAAATCGGAGGTGTCAAGTTTGAAATCAAGGGAAATCCTCA-TTTCTTAATG 645
||||||| |||| ||| ||||||||||||||| | || ||||| ||| | |||| ||| |
Sbjct 533 CTTGTGCAAAAACCGGTGGTGTCAAGTTTGAAGTTAAAGGAAACCCT-AGTTTCCTAACG 591
Query 646 ATCTTACCGTACAATGTAGGAGGAGCTGGAGCTGTTAGGGCTATGCAAATTAAGGGAA-C 704
|||||||||||||||||||||||||| |||| | ||| || || | ||||||||| |
Sbjct 592 ATCTTACCGTACAATGTAGGAGGAGCCGGAGATATTAAAGCCGTGTATGTTAAGGGAAGC 651
Query 705 AAGGACCCAGTGGATTGCGATGAAGAAGAAT-TGGGGACAGATTTGGAGCACTGGTGTTG 763
|| ||| |||||| || |||| | |||| |||||||| | |||| |||| ||||
Sbjct 652 AAA-ACCGGGTGGATAGCAATGA-GCAGAAACTGGGGACAAAACTGGACCACTAATGTTA 709
Query 764 -TGTTGACCGGACA-ATGTTTATCGTTTAGGCTTACCACAAGTGATGGAG-TTATGAAAG 820
| | | |||| || | || |||| || ||| |||| || ||||||| || ||| ||||
Sbjct 710 ATCTAG-CCGGTCAGA-GTGTATCATTGAGGGTTACAACGAGTGATG-AGGTTACAAAAG 766
Query 821 AGTTTATTGATGT 833
| |||| ||||||
Sbjct 767 ATTTTACTGATGT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5