BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39320.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947904 jgi|Araly1|947904|scaffold_704133.1 2390 0.0
Ahg936755 jgi|Araly1|936755|scaffold_500946.1 1493 0.0
Ahg488394 jgi|Araly1|488394|fgenesh2_kg.6__1528__AT5G15490.1 1050 0.0
> Ahg947904 jgi|Araly1|947904|scaffold_704133.1
Length=1487
Score = 2390 bits (1294), Expect = 0.0
Identities = 1420/1481 (96%), Gaps = 8/1481 (1%)
Strand=Plus/Plus
Query 89 TTT-CAG-GAAACAAA-ATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGAGGAC 145
||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 8 TTTGCAGAGAAA-AAATATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGTGGAC 66
Query 146 CAACAATGGCAGTGATTGCATTGAAATGTCCAGATATTGAAGTGGCAGTTGTTGATATCT 205
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 67 CAACAATGGCAGTGATTGCATTGAAATGTCCAGATATTGAAGTAGCAGTTGTTGATATCT 126
Query 206 CTGTTCCTAGAATCAACGCTTGGAACAGTGATCAGCTTCCGATTTACGAGCCAGGTCTTG 265
|||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 127 CTGTTCCTAGGATCGAGGCTTGGAATAGTGATCAGCTTCCGATTTACGAGCCAGGACTTG 186
Query 266 ACGATATCGTTAAGCAATGCAGAGGAAAGAATCTTTTCTTCAGTACTGATGTGGAGAAAC 325
||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct 187 ACGATATTGTTAAGCAATGTAGAGGGAAGAACCTTTTCTTTAGTACTGATGTGGAGAAAC 246
Query 326 ATGTTAGAGAAGCTGATATTGTCTTTGTCTCTGTTAACACACCGACTAAAACGACTGGTC 385
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 247 ATGTTAGAGAAGCTGATATCGTTTTTGTCTCTGTTAATACACCGACTAAAACGACTGGTC 306
Query 386 TTGGAGCTGGGAAAGCTGCTGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGG 445
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTGGAGCTGGGAAAGCTGCGGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGG 366
Query 446 ATGTATCGGTTTCTGACAAGATTGTTGTTGAGAAATCGACTGTTCCGGTGAAGACAGCTG 505
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 367 ATGTATCGGTTTCTGATAAGATTGTTGTTGAGAAATCGACTGTACCGGTCAAGACAGCTG 426
Query 506 AAGCTATTGAGAAGATTTTGATGCATAACAGTAAAGGAATCAAGTTTCAGATTCTTTCGA 565
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 427 AAGCTATTGAGAAGATTTTGATGCATAATAGTAAAGGGATCAAGTTTCAGATTCTTTCGA 486
Query 566 ATCCGGAGTTTCTTGCTGAAGGAACTGCTATCGCTGATCTTTTTAACCCTGACCGTGTTT 625
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 487 ATCCGGAGTTTCTTGCAGAAGGAACTGCGATCGCTGATCTTTTTAACCCTGACCGTGTCT 546
Query 626 TGATCGGAGGGCGAGAAACACCTGAAGGATTCAAAGCTGTTCAGACACTTAAAGAGGTTT 685
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 547 TGATCGGAGGGCGAGAAACACCAGAAGGATTCAAAGCTGTTCAGACACTTAAGGAGGTTT 606
Query 686 ATGCTAATTGGGTTCCTGAAGGTCAGATCATCACAACTAATCTCTGGTCTGCTGAGCTTT 745
||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 607 ATGCTAATTGGGTTCCTGAAGACCAAATCATCACAACAAATCTCTGGTCTGCGGAGCTTT 666
Query 746 CTAAGTTAGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTAAGTTAGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTG 726
Query 806 CACTTTGTGAATCCACTGGTGCTGATGTTACTCAAGTGTCTTACGCTGTTGGTACTGATT 865
| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 727 CTCTCTGTGAATCCACCGGTGCTGATGTTACTCAAGTTTCTTACGCTGTTGGTACTGATT 786
Query 866 CAAGAATCGGTTCCAAATTCTTGAACGCTAGTGTTGGATTCGGAGGTTCTTGTTTCCAGA 925
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 787 CAAGAATCGGTTCCAAATTCTTGAATGCTAGTGTTGGATTCGGCGGTTCTTGTTTCCAGA 846
Query 926 AGGACATTCTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAAT 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGGACATTCTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAAT 906
Query 986 ACTGGAAACAAGTGATCAAGATCAACGATTACCAAAAGAACCGGTTCGTGAACAGAATCG 1045
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 907 ACTGGAAACAAGTGATCAAGATCAACGATTACCAAAAGAACAGGTTTGTGAACAGAATCG 966
Query 1046 TGTCCTCTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATTCTTGGATTCGCATTCA 1105
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 967 TCTCCTCTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATCCTCGGATTCGCATTCA 1026
Query 1106 AGAAAGACACTGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTATTAG 1165
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1027 AGAAAGACACAGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTGTTAG 1086
Query 1166 GAGACAAAGCAC-AGATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATTCA-GAG 1223
|||||||||| | | ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1087 GAGACAAAGCGCTA-ATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATT-ATGAG 1144
Query 1224 AGATCTCTCGATGAAAAAGTTCGACTGGGACCATCCTCTTCACTTGCAGCCAATGAGTCC 1283
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1145 AGATCTCTCGATGAAAAAGTTTGACTGGGACCATCCCCTTCACTTGCAGCCAATGAGTCC 1204
Query 1284 AACCACAGTGAAACAAGTGAGTGTGACTTGGGACGCATATGAAGCTACAAAAGACGCACA 1343
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1205 AACCACAGTGAAACAAGTGAGTGTGACTTGGGACGCATATGCAGCTACAAAAGACGCACA 1264
Query 1344 CGCGGTTTGCGTTTTGACTGAGTGGGACGAGTTTAAGTCGTTAGATTACCAGAAGATCTT 1403
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 CGCGGTTTGCATTTTGACTGAGTGGGACGAGTTTAAGTCGTTAGATTACCAGAAGATCTT 1324
Query 1404 CGACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGTTAACAA 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CGACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGTTAACAA 1384
Query 1464 GTTAAGAGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCACTTGACCCATGGCTCAA 1523
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1385 GTTAAGAGAGATTGGTTTCATCGTTTACTCCATTGGTAAGCCACTCGACCCATGGCTCAA 1444
Query 1524 GGACATGCCTGCCTTTGTCTAATCACAAGGCAAAACCTGGT 1564
||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1445 GGACATGCCTGCCTTTGTCTAATCAGAAGGCAAAAACTGGT 1485
> Ahg936755 jgi|Araly1|936755|scaffold_500946.1
Length=1732
Score = 1493 bits (808), Expect = 0.0
Identities = 1248/1461 (85%), Gaps = 28/1461 (2%)
Strand=Plus/Plus
Query 100 AAAATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGAGGACCAACAATGGCAGTG 159
|||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 84 AAAATGGTGAAGATTTGTTGTATTGGAGCTGGGTATGTTGGTGGACCAACAATGGCAGTG 143
Query 160 ATTGCATTGAAATGTCCAGATATTGAAGTGGCAGTTGTTGATATCTCTGTTCCTA-GAAT 218
||||| |||||||||||||| ||||||| || ||||||||||||||||| || | | ||
Sbjct 144 ATTGCTTTGAAATGTCCAGACGTTGAAGTAGCGGTTGTTGATATCTCTGTACC-ACGTAT 202
Query 219 CAACGCTTGGAACAGTGATCAGCTTCCGATTTACGAGCCAGGTCTTGACGATATCGTTAA 278
|||||||||||||||||| |||||||||||||||||||| |||||||| ||| | || ||
Sbjct 203 CAACGCTTGGAACAGTGACCAGCTTCCGATTTACGAGCCTGGTCTTGATGATGTTGTGAA 262
Query 279 GCAATGCAGAGGAAAGAATCTTTTCTTCAGTACTGATGTGGAGAAACATGTTAGAGAAGC 338
||||||| | |||||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 263 GCAATGCCGTGGAAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACATGTTAGGGAAGC 322
Query 339 TGATATTGTCTTTGTCTCTGTTAACACACCGACTAAAACGACTGGTCTTGGAGCTGGGAA 398
||||||||| ||||| ||||| || |||||||| ||||| | |||||||| ||||| ||
Sbjct 323 TGATATTGTGTTTGTTTCTGTCAATACACCGACGAAAACTAGAGGTCTTGGTGCTGGTAA 382
Query 399 AGCTGCTGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGGATGTATCGGTTTC 458
|||||| ||||| || ||||||||||| ||||| ||||||||||| ||||| ||||| ||
Sbjct 383 AGCTGCGGATCTTACGTATTGGGAGAGCGCTGCACGTATGATCGCTGATGTGTCGGTATC 442
Query 459 TGACAAGATTGTTGTTGAGAAATCGACTGTTCCGGTGAAGACAGCTGAAGCTATTGAGAA 518
|| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 443 GGATAAGATTGTGGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAAGCTATTGAGAA 502
Query 519 GATTTTGATGCATAACAGTAAAGGAATCAAGTTTCAGATTCTTTCGAATCCGGAGTTTCT 578
|||||||| ||||| || ||||| || |||||||||||||||||||||||||||||| |
Sbjct 503 GATTTTGACACATAATAGCAAAGGGATTAAGTTTCAGATTCTTTCGAATCCGGAGTTT-T 561
Query 579 T-GCTGAAGGAACTGCTATCGCTGATCTTTTTAACCCTGACCGTGTT-TTGATCGGAGGG 636
| || |||||||| || ||| |||||||||||||||||||||||| || || ||||||
Sbjct 562 TGGCGGAAGGAACCGCGATCAAGGATCTTTTTAACCCTGACCGTGTTCTT-ATTGGAGGG 620
Query 637 CGAGAAACACCTGAAGGATTCAAAGCTGTTCAGACACTTAAAGAGGTTTATGCTAATTGG 696
|| || || || ||||| || ||||| || ||||| || || || || |||||| |||||
Sbjct 621 CGGGAGACCCCGGAAGGGTTTAAAGCGGTGCAGACTCTCAAGGATGTGTATGCTCATTGG 680
Query 697 GTTCCTGAAGGTCAGATCATCACAACTAATCTCTGGTCTGCTGAGCTTTCTAAG-TTAGC 755
||||||||||| || ||||| || || ||||| ||||||||||||||||| ||| || ||
Sbjct 681 GTTCCTGAAGGCCAAATCATAACCACCAATCTATGGTCTGCTGAGCTTTCCAAGCTT-GC 739
Query 756 TGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTGCACTT-TGTG 814
||||| |||||||||||||| ||||||||||| |||||||| ||||| || || ||||
Sbjct 740 AGCAAACGCTTTCTTGGCTCAAAGGATTTCATCTGTCAATGCTATGTCGGC-TTTATGTG 798
Query 815 AATCCACTGGTGCTGATGTTACTCAAGTGTCTTACGCTGTTGGTACTGATTCAAGAATCG 874
|| |||||||||| ||||| || |||||||||||||| |||||||| || || ||||| |
Sbjct 799 AAGCCACTGGTGCAGATGTCACGCAAGTGTCTTACGCCGTTGGTACAGACTCGAGAATTG 858
Query 875 GTTCC-AAATTCTTGAACGCTAGTGTTGGATTCGGAGGTTCTTGTTTCCAGAAGGACATT 933
| ||| || ||||||||| | ||||| |||||||||||||| |||||||||||||| |||
Sbjct 859 G-TCCTAAGTTCTTGAACTCGAGTGTCGGATTCGGAGGTTCGTGTTTCCAGAAGGATATT 917
Query 934 CTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAATACTGGAAA 993
|||||||| |||||||||||| | ||||||||||| || |||||||| || |||||||||
Sbjct 918 CTGAATCTTGTCTACATCTGTGAGTGCAACGGACTCCCGGAAGTGGCAGAGTACTGGAAA 977
Query 994 CAAGTGATCAAGATCAACGATTACCAAAAGAACCGGTTCGTGAACAGAATCGTGTCCTCT 1053
||||| ||||||||||| || ||||| |||| ||||||||||||| | | || || ||
Sbjct 978 CAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGTTGTTTCTTCC 1037
Query 1054 ATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATTCTTGGATTCGCATTCAAGAAAGAC 1113
||||||||| | || || ||||||||| ||||| |||| || |||||||||||||||||
Sbjct 1038 ATGTTCAACTCCGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATTCAAGAAAGAT 1097
Query 1114 ACTGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTAT-TAGGAGACAA 1172
|| ||||||||||||||||| || ||||| || ||||| || ||||| | | | ||||||
Sbjct 1098 ACAGGTGACACAAGGGAAACTCCAGCCATCGACGTGTGCAAGGGTCT-TCTCGAAGACAA 1156
Query 1173 AGCACA-GATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATTCAGAGAGATCTCT 1231
|||| | | | ||||| || || || || || || ||||| ||||| ||||| ||| | |
Sbjct 1157 AGCA-AGGCTAAGTATTTACGACCCGCAGGTGACTGAGGATCAGATCCAGAGGGATTTAT 1215
Query 1232 CGATGAAAAAGTTCGACTGGGACCATCCTCTTCACTTGCAGCCAATGAGTCCAACCACAG 1291
| ||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||
Sbjct 1216 CCATGAACAAGTTCGACTGGGACCATCCGCTACATTTGCAGCCAATGAGCCCAACCACAG 1275
Query 1292 TGAAACAAGTGAGTGTGACTTGGGACGCATATGAAGCTACAAAAGACGCACACGCGGT-T 1350
||||||||||||| || |||||||||||||| ||||| || || ||||| || |||| |
Sbjct 1276 TGAAACAAGTGAGCGTTACTTGGGACGCATACGAAGCAACTAAGGACGCGCA--CGGTAT 1333
Query 1351 -TGCGTTTTGACTGAGTGGGACGAGTTTAAG-TCGTTAGA-TTACCAGAAGATCTTCGAC 1407
||| | ||||||||||||| ||||| ||| | || || || |||||||||||| |||
Sbjct 1334 CTGCATCATGACTGAGTGGGATGAGTTCAAGAAC-TTGGACTT-CCAGAAGATCTTTGAC 1391
Query 1408 AACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGT-TAACAAGTT 1466
|||||||||||||||||||| | |||||||||||||||||||||||| | || ||| |
Sbjct 1392 AACATGCAGAAACCGGCTTTCGTGTTCGACGGAAGAAACATTATGAATCTGCAA-AAGCT 1450
Query 1467 AAGAGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCACTTGACC-CATGGCTCAAGG 1525
||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 1451 AAGGGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCCCTTGACGAC-TGGCTCAAGG 1509
Query 1526 ACATGCCTGCCTTTGTCTAAT 1546
||||||||||| ||| |||||
Sbjct 1510 ACATGCCTGCCGTTGCCTAAT 1530
> Ahg488394 jgi|Araly1|488394|fgenesh2_kg.6__1528__AT5G15490.1
Length=1780
Score = 1050 bits (568), Expect = 0.0
Identities = 1191/1486 (80%), Gaps = 65/1486 (4%)
Strand=Plus/Plus
Query 99 CAAAATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGAGGACCAACAATGGCAGT 158
||||||||||||||| || || ||||||||||||||||| || || ||||| ||||| ||
Sbjct 102 CAAAATGGTGAAGATTTGCTGCATTGGAGCTGGATATGTTGGTGGTCCAACCATGGCGGT 161
Query 159 GATTGCAT-TGAAATGTCCAGATATTGAAGTGGCAGTTGTTGATATCTCTGTTCCTAGAA 217
||||| | | || |||||| | ||||||| || ||||||||||||||||| || || |
Sbjct 162 CATTGC-TCTCAAGTGTCCATCTGTTGAAGTAGCTGTTGTTGATATCTCTGTGCCAAGGA 220
Query 218 TCAACGCTTGGAACAGTGATCAGCTTCCGATTTACGAGCCAGGTCTTGACGATATCGTTA 277
|||| || |||||||| || |||||||| || || ||||| ||||| || ||| | ||||
Sbjct 221 TCAATGCATGGAACAGCGACCAGCTTCCAATCTATGAGCCTGGTCTCGATGATGTGGTTA 280
Query 278 AGCAATGCAGAGGAAAGAATCTTTTCTTCAGTACTGATGTGGAGAAACATGTTAGAGAAG 337
|||| ||| | ||||||||||| |||||||| |||||||| ||||| ||||| ||||| |
Sbjct 281 AGCAGTGCCGTGGAAAGAATCTCTTCTTCAGCACTGATGTTGAGAAGCATGTGAGAGAGG 340
Query 338 CTGATATTGTCTTTGTCTCTGTTAACACACCGACTAAAACGAC-TGGTCTTGGAGCTGGG 396
|||| ||||| ||||| ||||| ||||| |||||||| || | |||||||||||||||
Sbjct 341 CTGACATTGTTTTTGTGTCTGTCAACACCCCGACTAAGAC-CCGTGGTCTTGGAGCTGGC 399
Query 397 AAAGCTGCTGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGGATGTATCGGTT 456
|||||||| ||| | ||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 400 AAAGCTGCGGATTTGACTTACTGGGAGAGCGCTGCTCGTATGATTGCGGATGTTTCGGTT 459
Query 457 TCTGACAAGATTGTTGTTGAGAAATCGACTGTTCCGGTGAAGACAGCTGAAGCTATTGAG 516
|||||||||||||||||||||||||| |||||||| || || || || || || ||||||
Sbjct 460 TCTGACAAGATTGTTGTTGAGAAATCAACTGTTCCTGTCAAAACCGCAGAGGCAATTGAG 519
Query 517 AAGATT-TTGATGCATAACAGTAAAGGAATCAAGTTTCAGATTCTT-TCGAATCCGGAGT 574
|||||| || | || || || ||||||||||| || |||||| || || || || ||||
Sbjct 520 AAGATTCTT-ACCCACAATAGCAAAGGAATCAAATTCCAGATT-TTGTCAAACCCTGAGT 577
Query 575 TTCTTGCTGAAGGAACTGCTATCGCTGATCTTTTTAACCCTGACCGTGTTTTGATCGGAG 634
| |||||||||||||| ||||| | || ||||| | ||||||||||| | ||||| |
Sbjct 578 TCCTTGCTGAAGGAACCGCTATTGAAGACCTTTTCATGCCTGACCGTGTCCTCATCGGTG 637
Query 635 GGCGAGAAACACCTGAAGGATTCAAAGCTGTTCAGA-CACTT-AAAGAGGTTTATGCT-A 691
| || |||||||||||||| || ||| || || | | ||| ||||| |||||| | |
Sbjct 638 GTCGTGAAACACCTGAAGGCTTTGCAGCCGT-CAAAGC-CTTGAAAGACGTTTATTCCCA 695
Query 692 ATTGGGTTCCTGAAG-GTCAGA-TCATCACAACTAATCTCTGGTCTGCTGAGCTTTCTAA 749
|| |||| ||||||| | ||| || |||| || |||||||||||||| |||||||| ||
Sbjct 696 AT-GGGTCCCTGAAGAG--AGAATCCTCACCACCAATCTCTGGTCTGCCGAGCTTTCCAA 752
Query 750 G-TTAGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTGCAC 808
| || || || || || ||||| || ||||| || |||||||||||||| ||||| || |
Sbjct 753 GCTT-GCAGCTAACGCCTTCTTAGCCCAGAGAATCTCATCAGTCAATGCAATGTCCGCTC 811
Query 809 TTTGTGAATCCACTGGTGCTGATGTTACTCA-AG-TGTCTTACGCTGTTGGTACTGATTC 866
| |||||| | ||||| || |||| |||| || | ||||||||||| || | || ||
Sbjct 812 TCTGTGAAGCAACTGGCGCCAATGT--CTCAGAGGTCTCTTACGCTGTGGGCAAAGACTC 869
Query 867 AAGAATCGGTTCCAAATTCTTGAACGCTAGTGTTGGATTCGGAGGTTCTTGTTTCCAGAA 926
| || ||| |||| ||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 870 CCGGATTGGTCCCAAGTTCTTGAACTCGAGTGTTGGATTCGGAGGATCTTGTTTCCAGAA 929
Query 927 GGACATTCTGAATCTC-GTCTACATCTGTC-AATGCAACGGACTT-CCAGAAGTGGCGGA 983
|| ||||| || || ||||||||||| | |||||||||| ||| || ||||| || ||
Sbjct 930 AGATATTCTCAA-CTTAGTCTACATCTG-CGAATGCAACGG-CTTACCCGAAGTTGCTGA 986
Query 984 ATACTGGAAACAAGTGATCAAGATCAACGATTACCAAAAGAACCGG-TTCGTGAACAGAA 1042
|||||||||||||| |||||||||||||| ||||| || |||| | || || ||| | |
Sbjct 987 GTACTGGAAACAAGTCATCAAGATCAACGACTACCAGAA-AACCCGATTTGTTAACCGCA 1045
Query 1043 TCGTGTCCTCTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATTCTTGGATTCGCAT 1102
| || || || ||||||||||| ||||||||||| ||| ||||| |||| || ||||| |
Sbjct 1046 TTGTCTCTTCAATGTTCAACACAGTCTCCAACAAAAAGATTGCGGTTCTCGGGTTCGCTT 1105
Query 1103 TCAAGAAAGACACTGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTAT 1162
||||||||||||| || |||||||| || || || ||||||||||| || |||||||| |
Sbjct 1106 TCAAGAAAGACACAGGAGACACAAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTCTGT 1165
Query 1163 TAGGAGACAAAGCACAGA-TCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATTCAG 1221
|||| |||||||| | | |||| ||||| || || |||||||| || || ||||| ||
Sbjct 1166 TAGGTGACAAAGCTC-GTCTCAGCATCTACGACCCACAAGTCACTGAAGACCAGATCCAA 1224
Query 1222 AGAGATCTCT--CGATGAA-AAAGTTCGACTGGGACCATCCTCTTCA-CTTGCAGCCAAT 1277
||||| || | | ||||| ||| |||||||||||||| || ||||| || ||||| ||
Sbjct 1225 AGAGA-CT-TAACCATGAACAAA-TTCGACTGGGACCACCCGCTTCATCTC-CAGCCCAT 1280
Query 1278 GAGTCCAACCACAGTGAAACAAGTG--AGTGTGACTTGGGACGCATATGAA-GCTACAAA 1334
||| || ||||| ||||||||||| ||| | ||||||||||||| | || || ||
Sbjct 1281 GAGCCCCACCACTGTGAAACAAGTCTCAGTC-G-CTTGGGACGCATAC-ACTGCAACCAA 1337
Query 1335 AGACGCACACGCGGT-T-TGCGTTTTGACTGAGTGGGACGAGTTTAAGTCGTTAGATTAC 1392
|||||| |||| | | | ||| |||| || |||||||||||||| ||| | |||| |
Sbjct 1338 AGACGCCCACG-G-TATCTGCATTTTAACCGAGTGGGACGAGTTCAAGAAACTCGATTTC 1395
Query 1393 CAGAAGATCTTCGACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTAT- 1451
||| |||||| || || |||||||||||||||||| | || ||||| ||||| | |
Sbjct 1396 CAGCGGATCTTTGAGAATATGCAGAAACCGGCTTTTGTTTTTGACGGTAGAAATGTGGTC 1455
Query 1452 GAATGTTAACAAGTTAAGAG-AGATTGG-TTTCATTGTTTACTCCATTGGTAAGCCACTT 1509
|| | | |||| | || | | ||||| ||| |||||||||||||||||||||||| ||
Sbjct 1456 GAC-GCTGACAAACTCAG-GCAAATTGGGTTT-ATTGTTTACTCCATTGGTAAGCCA-TT 1511
Query 1510 G-ACCCA-TGGCTCAAGGACATGCCTGC-CTTTGTCTAATCA-CAA 1551
| ||| | |||||||||||||||||||| ||| | |||| || |||
Sbjct 1512 GGACC-AGTGGCTCAAGGACATGCCTGCTCTT-GCCTAAACAACAA 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5