BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39330.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494054 jgi|Araly1|494054|fgenesh2_kg.7__3487__AT5G39330.2 712 0.0
> Ahg494054 jgi|Araly1|494054|fgenesh2_kg.7__3487__AT5G39330.2
Length=677
Score = 712 bits (385), Expect = 0.0
Identities = 614/717 (86%), Gaps = 46/717 (6%)
Strand=Plus/Plus
Query 34 aaatgaaaaaaGAAGCATTAGTTCCCAAACTCACATCTGAATTGCCTCCGTTTACACTAA 93
||||| ||| |||||||||||||||||||||||| || | |||| |||||| |||||||
Sbjct 1 AAATGGAAATAGAAGCATTAGTTCCCAAACTCAC--CT-ATTTGCGTCCGTTGACACTAA 57
Query 94 AAG---ACCA--T-CCGAAGTTTGTCGTCTTAGTGGTCATCTTGTTCTGTATCGCTTTCT 147
||| | | | ||| ||| |||| |||||||| | ||||| | | ||| ||| |
Sbjct 58 AAGATTATTATGTGCCGTTTTTTCTCGTAATAGTGGTCTTATTGTT-T-T-TCGGTTT-T 113
Query 148 TCATTGCTATGACCTTTTGCGGGTATGAACAAGATAAAGAAAAAGAAAACTATGTCCCAA 207
| || | | | | || | |||||||||| | |||||| || |||| ||||||||||
Sbjct 114 T--TTAC-GT-A-C-GTT--GTGTATGAACAACACAAAGAAGAACAAAATTATGTCCCAA 165
Query 208 ATATTACAATACCTTCTATGGATTTCACGGTCCTTAATATAACCGAGACTCATCTTAGTG 267
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 166 ATATTACAATACCTTCTATCGATTTCACGGTCCTTAATATAACCGAGACTCGTCTTAGTG 225
Query 268 TAAAATGGGATTTATTGTTAAGGATCCCTAGAGATCTTCCTGGTTGGTATATGTGTCTCA 327
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 226 TAAAATGGGATTTATTGTTAAGGATCCCTAGTGATCTTCCTGGTTTGTATATGTGTCTCA 285
Query 328 AAGGAGATTTTCAGCTTTCCATAATATACAGAGGTGTTACCATTGCTACTTCATCCATAG 387
||||| | |||||| ||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 286 AAGGAAACTTTCAGTTTTCCATAATATACAAAGGTGTTACCATTGCTACTTCATTCATAG 345
Query 388 AGAGTTACAGTCTGATACCACGGTGGGCTCAGCTGATTAGGGTTTCATCGATTGCTTCTG 447
|||| | | | || | | ||||||||||||||||||||||||||||
Sbjct 346 AGAG---C--T-T-AT-------T----T---CTGATTAGGGTTTCATCGATTGCTTCTG 384
Query 448 AAGGAGACATGGAGGGTGTGATTATAAAAGATATTATGAAGGATATCAAGGAAAAAGGTG 507
||||||| ||||| ||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 385 AAGGAGATATGGACGGTGTGATTCTGAAAGATATTATGAAGGATATCAAGGAAATAGGTG 444
Query 508 AAATAAGGTTCCGATCGCGATTGCTTCTTCCGGATTGTAGATATGGGACAAGTGGAAAGA 567
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 445 AAATAAGGTTCGGATCGCGATTGCTTCTTCCGGATTGTAGATATGGGACAACTGGAAAGA 504
Query 568 TGAACTATGCGTGTGATGAAGCCATGTTAAGGTTCGAGCCTGGCTCTCAAAGGAATGCAA 627
|||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct 505 TGAACTATGCATGTGATGTAGCCATGTTACGGTTCGAGCCTGGCTCTCAGAGGAATGCAA 564
Query 628 CTTTGTTTGGAGACCACCCTATTTGCCGCTATCTTCGCTAAGTACTTTTCATCAATAGTT 687
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 565 CTTTGTTTGGAAACCACCCTATTTGCCGCTATCTTCGCTAAGTACTTTTCATCAAGATTT 624
Query 688 TGTTCTTTAGTTTGTCAAATGATGGACTTTCTAAATTCTTTTGCGTTTTGATATGGA 744
| || |||| ||| |||||| ||||| || | |||||||||| | |||||||||
Sbjct 625 TTTTGTTTAATTTACCAAATGTTGGACATT-T---TTCTTTTGCGCTGTGATATGGA 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5