BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39340.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494053 jgi|Araly1|494053|fgenesh2_kg.7__3486__AT5G39340.1 1232 0.0
> Ahg494053 jgi|Araly1|494053|fgenesh2_kg.7__3486__AT5G39340.1
Length=791
Score = 1232 bits (667), Expect = 0.0
Identities = 757/799 (95%), Gaps = 11/799 (1%)
Strand=Plus/Plus
Query 6 TCTCTTTATTGGGATTGCAATTTCAAACAAACTTTACATCTTCTTCTTCTCTCTGCTTTT 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTTATTGGGATTGCAATTTCAAACAAACTTTACATCTTCTTCTTCTCTCTGCTTTT 60
Query 66 GCCTTCACGACGAGTAGAGAGAGCCATGGACACACTCATTGCTCAGTTACAGAGACGATT 125
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCCTT--C-ACGAGTAGAGAGAGCCATGGACACACTCATTGCTCAGTTACAGAGACAATT 117
Query 126 TTGTGATTTCACCATTAGTCTCTATCACCAGGGGTTTTTGGATGATCAATTCACAGAATT 185
| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 TCGTGATTACACCATTTCTCTCTATCACCAGGGGTTTTTGGATGATCAATTCACTGAATT 177
Query 186 GAAAAAGCTGCAAGATGAATGTAGTCCTGATTTTGTGGCTGAGGTTGTTACTCTCTTCTT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAAAAAGCTGCAAGATGAATGTAGTCCTGATTTTGTGGCTGAGGTTGTTACTCTCTTCTT 237
Query 246 TGAAGACTGTGAGAAGCTTATCAGTAATATGGCTAGAGCTTTAGATCAGACAGGAAATGT 305
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 TGAAGACTGTGAGAAGCTTATCAGTAATATGGCTAGAGCGTTAGATCAGACAGGAAATGT 297
Query 306 AGATTTCAAACTGGTAGGTTCTAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGG 365
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGATTTCAAGCTGGTAGGTTCCAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGG 357
Query 366 TGCCAAGAGAGTCAAAGGTCTTTGTGTTACCCTCAAGGAGTGTTGCGACTCTCAGAACTA 425
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 358 TGCCAAGAGAGTCAAAGGTCTTTGTGTTACACTCAAGGAGTGTTGCGACTCTCAGAACTA 417
Query 426 TGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACATTAAAAGCAAA 485
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 418 TGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAA 477
Query 486 GCTTCAAGATCTGTTCAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCA 545
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCTTCAAGATTTGTTTAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCA 537
Query 546 AGTGGATATATAAACAATAGACCTATCGACAACAGAACAGCAAGATGATGATCATCCAGT 605
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 538 GGTGGATATATAAACAATAGACCTATCGCCAACAGAATAGCAAGATGATGATGATCCAGT 597
Query 606 TGCATTCTTCA-GACGAGTACTACTCGAATTTGTTGCTTCGaaaaagaaaaaaaa--CTC 662
||||||||||| | |||||| |||| | ||||| ||| |||||| |||||||| |||
Sbjct 598 TGCATTCTTCAAG-CGAGTAATACTTGGATTTGAA-CTTAGAAAAAAAAAAAAAAAACTC 655
Query 663 TTGAGAATGTGTGGAAAAGAGAGGTGATTGTTGTTCATAGATCAATACTATGTATCTTTT 722
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 656 TTTAGAATGTGTGGAAAAGAGAGGTGATTGTTGTTCATAGATCAGTACTATGTATCTTTT 715
Query 723 GTATCATCATCTCTTGAATCTTGGTACTGATCTTATCTGAATAGTATGAATTTGCATCTC 782
|||||||| ||| | || ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 716 GTATCATC-TCT-TGGA-TCTTGATACTGACCTTATCTGAATAGTATGAATTTGCATCTC 772
Query 783 ATAAGACCATATGAACAAG 801
||||||||||||||| |||
Sbjct 773 ATAAGACCATATGAAGAAG 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5