BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39360.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494051 jgi|Araly1|494051|fgenesh2_kg.7__3484__AT5G39360.1 2039 0.0
> Ahg494051 jgi|Araly1|494051|fgenesh2_kg.7__3484__AT5G39360.1
Length=1316
Score = 2039 bits (1104), Expect = 0.0
Identities = 1254/1325 (95%), Gaps = 15/1325 (1%)
Strand=Plus/Plus
Query 1 AAGCAGATTTGCTTCTTCTCGATTCTTTGCAATTTGCATGCATTGCTCATCaaaaaaaTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAGCAGATTTGCTTCTTCTCGATTCTTTGCAATTTGCATGCATTGCTCATC--AAAAATT 58
Query 61 CCTTTCTGGCTTTTGTTGGAAAATAGCTGTATAACTTCAAATGTTGAAACTTTGCTTT-T 119
||||||||| |||||||||||| ||||||| | |||| ||||||||||||||| |||| |
Sbjct 59 CCTTTCTGGGTTTTGTTGGAAATTAGCTGTTTTACTTGAAATGTTGAAACTTTACTTTAT 118
Query 120 CTTCTTC-TTCTCTTTTGGTCAAATTTTGTGTTCTCTCTAGAGCAAAACCCTAATTCTCT 178
|||||| || | ||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 119 -TTCTTCTTTTTTTTTTGGTCAAATTTTGTGTTCTCTCTAGATCAAAACCCTAA-T-TCT 175
Query 179 CAATTCTACTCAAAATTAATATCTCT-T-GCTTCCTTGAGAAAGATAAAGATTTGTG-TT 235
|||||||||||||| || ||| | | | | ||| ||||| |||| ||||| ||||| ||
Sbjct 176 CAATTCTACTCAAAGTTCCTATTTTTATAG-TTCTTTGAGGAAGAGAAAGA-TTGTGTTT 233
Query 236 TACTAAGGTTGAGGAAATGATAATAGCAAAGCAATATCGTTGCATTCACTCGGCGACTTG 295
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 234 TAC-AAGGTTGAGGAAATGATAATAGCAAAGCAATACCGTTGCATTCACTCGGCGACTTG 292
Query 296 TCATTGCACGAAAGGACATCTTAGCGAAGAAGTATTGTTTCTTATGGTTCAGCATCTAAA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TCATTGCACGAAAGGACATCTTAGCGAAGAAGTATTGTTTCTTATGGTTCAGCATCTAAA 352
Query 356 CTGGAACCCTAATGTGATTGCCACTCTATCTTGTGTTTGTAAATGGTTTGATGATCTCGC 415
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 353 CTGGAACCCTAATGTGATTGCGACTCTATCTTGTGTTTGTAAATGGTTTGATGATCTCGC 412
Query 416 TAAGCGGTTATTGTGGAAAGAATTCTGTAGAGCTAGAGCGCCTAAGATGATGAGTGACCT 475
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 413 TAAGCGGTTATTGTGGAAAGAATTCTGCAGAGCTAGAGCACCTAAGATGATGAGTGACCT 472
Query 476 TCAATCTAGTGGTAGCCATAGTGTTGATGGGAGTTGGAGAGCACTAGGGAAACTTTTGAT 535
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 473 TCAATCTAGTGGTAGCCATAGTGTTGATGGGAGTTGGAGAGCACTTGGGAAACTTTTGAT 532
Query 536 TTACTGCTCTGGTTCAAGCAAAGGTGGACTCTTTAATGATGTTCAAATCTCTGGTCATTT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTACTGCTCTGGTTCAAGCAAAGGTGGACTCTTTAATGATGTTCAAATCTCTGGTCATTT 592
Query 596 TGTTCACAGAACCCGCTTCTCTAGAACATCGGGAAGGAGCTTTCTTCCTCCACAATGTCG 655
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 593 TGTTCACAGAACCCGATTCTCTAGAACATCAGGAAGGAGCTTTCTTCCTCCACAATGTCG 652
Query 656 AACTGATGATATTCTCTATGTTTCTGATCCTTGTGAACATTTGGATCAAGGAGAAGATGG 715
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 653 AACTGATGATATTCTCTATGTTTCTGATCCTTGTGAACATCTGGATCAAGGAGAAGATGG 712
Query 716 TGATTTGGGATTCTTCCGTGGGATTTTCAAATCGTTTTCTATGTCAAAGGTGAGGAAGTT 775
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 713 TGATTTGGGATTCTTCCGTGGGATTTTTAAATCGTTTTCAATGTCAAAGGTGAGGAAGTT 772
Query 776 GCTTATTAAGAAAGGGACACCATTTCATCCTACGGAAGTTTGTCCGTATTGCAAAGCGAA 835
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 773 GCTTATCAAGAAAGGGACACCATTTCATCCCACAGAAGTTTGTCCGTATTGCAAAGCAAA 832
Query 836 GCTGTGGAGTATGCTTCAGGCGAAAATGATACCACAGAGTGCTAGCTGTAGATTGGGGGC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GCTGTGGAGTATGCTTCAGGCGAAAATGATACCACAGAGTGCTAGCTGTAGATTGGGGGC 892
Query 896 TTATGAAGATAGCATTGAGTATTATGTTTGTCTCAATGGGCATATGCTTGGAGTTTGTAC 955
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 893 TTATGAAGATAGCATTGAGTATTATGTTTGCCTCAATGGGCATATGCTAGGAGTTTGTAC 952
Query 956 ACTCTTACCTTTGTCTGATTCTGAAGGGGCCT-CCGAGTTTCAGTGACTATAAATTGCCG 1014
||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 953 ACTCTTACCCTTGTCTGATTCTGAAGGGGC-TACCGAGTTTCAGTGACTATAAATTCCCG 1011
Query 1015 ACCTTGCGTTTTCCGTTGCAGAAAATGCTTGAAGCTTGGTCAGAGGTTATGATGTCGTCT 1074
|||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1012 ACCTTGCGTTTTCCTTTGCAGAAAATGCTTGAAGCTTGGTTATAAGTTATGATGTCGTCT 1071
Query 1075 CTCTGTTTCTTATGTACTGGTGAATTGTTGCTGCTAAACTTTGGGAATCATCACTTTGCA 1134
|||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1072 CTCTGTTTCTAATGTACCAGTGAATTGTTGTTGCTAGACTTTGGGAATCATCACTTTGCA 1131
Query 1135 AAGAGTTGATGTTAAGTGTATCATAAGCTCAAGTTGTGCAAGGTTTGACGATTTCAGATT 1194
|||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1132 AAGAGTTGATGTGAAGTGTATCATAAGCTGAAGTTGTGCAAGGTTCAACGATTTCAGATT 1191
Query 1195 CTCAATTTACCATTGGTGTGCATCTACAAACCATTTGTTGATTCTGTGCATGTATATGTA 1254
|||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1192 CTCAATCTACCATTGGTTTGCATCGACATACCATTTGTTGATTCTGTGCATGTATATGTA 1251
Query 1255 TTAACAACACTTGCAAATTGTAATAGACGCATATATTTCTGCTACATTTATGATCATTTG 1314
| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1252 TGAACAACACTTGCAAATTGTAATAGACGCATTTATTTCTGCTACATTTATAATCATTTG 1311
Query 1315 AACCC 1319
| |||
Sbjct 1312 ACCCC 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5