BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39360.1 Length=1322 Score E Sequences producing significant alignments: (Bits) Value Ahg494051 jgi|Araly1|494051|fgenesh2_kg.7__3484__AT5G39360.1 2039 0.0 > Ahg494051 jgi|Araly1|494051|fgenesh2_kg.7__3484__AT5G39360.1 Length=1316 Score = 2039 bits (1104), Expect = 0.0 Identities = 1254/1325 (95%), Gaps = 15/1325 (1%) Strand=Plus/Plus Query 1 AAGCAGATTTGCTTCTTCTCGATTCTTTGCAATTTGCATGCATTGCTCATCaaaaaaaTT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 AAGCAGATTTGCTTCTTCTCGATTCTTTGCAATTTGCATGCATTGCTCATC--AAAAATT 58 Query 61 CCTTTCTGGCTTTTGTTGGAAAATAGCTGTATAACTTCAAATGTTGAAACTTTGCTTT-T 119 ||||||||| |||||||||||| ||||||| | |||| ||||||||||||||| |||| | Sbjct 59 CCTTTCTGGGTTTTGTTGGAAATTAGCTGTTTTACTTGAAATGTTGAAACTTTACTTTAT 118 Query 120 CTTCTTC-TTCTCTTTTGGTCAAATTTTGTGTTCTCTCTAGAGCAAAACCCTAATTCTCT 178 |||||| || | ||||||||||||||||||||||||||||| ||||||||||| | ||| Sbjct 119 -TTCTTCTTTTTTTTTTGGTCAAATTTTGTGTTCTCTCTAGATCAAAACCCTAA-T-TCT 175 Query 179 CAATTCTACTCAAAATTAATATCTCT-T-GCTTCCTTGAGAAAGATAAAGATTTGTG-TT 235 |||||||||||||| || ||| | | | | ||| ||||| |||| ||||| ||||| || Sbjct 176 CAATTCTACTCAAAGTTCCTATTTTTATAG-TTCTTTGAGGAAGAGAAAGA-TTGTGTTT 233 Query 236 TACTAAGGTTGAGGAAATGATAATAGCAAAGCAATATCGTTGCATTCACTCGGCGACTTG 295 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 234 TAC-AAGGTTGAGGAAATGATAATAGCAAAGCAATACCGTTGCATTCACTCGGCGACTTG 292 Query 296 TCATTGCACGAAAGGACATCTTAGCGAAGAAGTATTGTTTCTTATGGTTCAGCATCTAAA 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 TCATTGCACGAAAGGACATCTTAGCGAAGAAGTATTGTTTCTTATGGTTCAGCATCTAAA 352 Query 356 CTGGAACCCTAATGTGATTGCCACTCTATCTTGTGTTTGTAAATGGTTTGATGATCTCGC 415 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 353 CTGGAACCCTAATGTGATTGCGACTCTATCTTGTGTTTGTAAATGGTTTGATGATCTCGC 412 Query 416 TAAGCGGTTATTGTGGAAAGAATTCTGTAGAGCTAGAGCGCCTAAGATGATGAGTGACCT 475 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 413 TAAGCGGTTATTGTGGAAAGAATTCTGCAGAGCTAGAGCACCTAAGATGATGAGTGACCT 472 Query 476 TCAATCTAGTGGTAGCCATAGTGTTGATGGGAGTTGGAGAGCACTAGGGAAACTTTTGAT 535 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 473 TCAATCTAGTGGTAGCCATAGTGTTGATGGGAGTTGGAGAGCACTTGGGAAACTTTTGAT 532 Query 536 TTACTGCTCTGGTTCAAGCAAAGGTGGACTCTTTAATGATGTTCAAATCTCTGGTCATTT 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 TTACTGCTCTGGTTCAAGCAAAGGTGGACTCTTTAATGATGTTCAAATCTCTGGTCATTT 592 Query 596 TGTTCACAGAACCCGCTTCTCTAGAACATCGGGAAGGAGCTTTCTTCCTCCACAATGTCG 655 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 593 TGTTCACAGAACCCGATTCTCTAGAACATCAGGAAGGAGCTTTCTTCCTCCACAATGTCG 652 Query 656 AACTGATGATATTCTCTATGTTTCTGATCCTTGTGAACATTTGGATCAAGGAGAAGATGG 715 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 653 AACTGATGATATTCTCTATGTTTCTGATCCTTGTGAACATCTGGATCAAGGAGAAGATGG 712 Query 716 TGATTTGGGATTCTTCCGTGGGATTTTCAAATCGTTTTCTATGTCAAAGGTGAGGAAGTT 775 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 713 TGATTTGGGATTCTTCCGTGGGATTTTTAAATCGTTTTCAATGTCAAAGGTGAGGAAGTT 772 Query 776 GCTTATTAAGAAAGGGACACCATTTCATCCTACGGAAGTTTGTCCGTATTGCAAAGCGAA 835 |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 773 GCTTATCAAGAAAGGGACACCATTTCATCCCACAGAAGTTTGTCCGTATTGCAAAGCAAA 832 Query 836 GCTGTGGAGTATGCTTCAGGCGAAAATGATACCACAGAGTGCTAGCTGTAGATTGGGGGC 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 GCTGTGGAGTATGCTTCAGGCGAAAATGATACCACAGAGTGCTAGCTGTAGATTGGGGGC 892 Query 896 TTATGAAGATAGCATTGAGTATTATGTTTGTCTCAATGGGCATATGCTTGGAGTTTGTAC 955 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 893 TTATGAAGATAGCATTGAGTATTATGTTTGCCTCAATGGGCATATGCTAGGAGTTTGTAC 952 Query 956 ACTCTTACCTTTGTCTGATTCTGAAGGGGCCT-CCGAGTTTCAGTGACTATAAATTGCCG 1014 ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||| Sbjct 953 ACTCTTACCCTTGTCTGATTCTGAAGGGGC-TACCGAGTTTCAGTGACTATAAATTCCCG 1011 Query 1015 ACCTTGCGTTTTCCGTTGCAGAAAATGCTTGAAGCTTGGTCAGAGGTTATGATGTCGTCT 1074 |||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 1012 ACCTTGCGTTTTCCTTTGCAGAAAATGCTTGAAGCTTGGTTATAAGTTATGATGTCGTCT 1071 Query 1075 CTCTGTTTCTTATGTACTGGTGAATTGTTGCTGCTAAACTTTGGGAATCATCACTTTGCA 1134 |||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1072 CTCTGTTTCTAATGTACCAGTGAATTGTTGTTGCTAGACTTTGGGAATCATCACTTTGCA 1131 Query 1135 AAGAGTTGATGTTAAGTGTATCATAAGCTCAAGTTGTGCAAGGTTTGACGATTTCAGATT 1194 |||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1132 AAGAGTTGATGTGAAGTGTATCATAAGCTGAAGTTGTGCAAGGTTCAACGATTTCAGATT 1191 Query 1195 CTCAATTTACCATTGGTGTGCATCTACAAACCATTTGTTGATTCTGTGCATGTATATGTA 1254 |||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1192 CTCAATCTACCATTGGTTTGCATCGACATACCATTTGTTGATTCTGTGCATGTATATGTA 1251 Query 1255 TTAACAACACTTGCAAATTGTAATAGACGCATATATTTCTGCTACATTTATGATCATTTG 1314 | |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 1252 TGAACAACACTTGCAAATTGTAATAGACGCATTTATTTCTGCTACATTTATAATCATTTG 1311 Query 1315 AACCC 1319 | ||| Sbjct 1312 ACCCC 1316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49445423349 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5