BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39370.1
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891804 jgi|Araly1|891804|Al_scaffold_0007_3790 553 4e-157
Ahg891791 jgi|Araly1|891791|Al_scaffold_0007_3777 553 4e-157
Ahg891733 jgi|Araly1|891733|Al_scaffold_0007_3719 553 4e-157
> Ahg891804 jgi|Araly1|891804|Al_scaffold_0007_3790
Length=2316
Score = 553 bits (299), Expect = 4e-157
Identities = 354/381 (93%), Gaps = 2/381 (1%)
Strand=Plus/Plus
Query 1 ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTC 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 190 ATGTGGTACCGAAAGCTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACAATCCACTC 249
Query 61 TCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACT 120
|||||||| ||||||||||| |||||||| | |||||||||||| ||| |||||||||||
Sbjct 250 TCCAAGCCTATCGGAACACTCAAAATCTTCAGTAACAACCTCCATCTCTTTGATCATACT 309
Query 121 AGTAACTCCGTTTGGTCAACCCAA-GTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGC 179
|||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||||||
Sbjct 310 AGTAACTCTGTTTGGTCAACC-AATGTGACTGGCCAAAGTCTGAAGTCGGACCTGACCGC 368
Query 180 CGAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAACAACAACGAGACAAGTGG 239
||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 369 CGAGCTTCTTGACAATGGCAACTTGGTATTGCGATACTCCAGTAACAACGAGACAAGTGG 428
Query 240 ATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGG 299
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 429 ATTTTTATGGCAAAGCTTCGACTTTCCGACGGATACATTACTCCCTGATATGAAACTGGG 488
Query 300 TTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCC 359
||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||
Sbjct 489 TTGGGATAAGAAGTCGGGTCTAAATAGGATACTAAAATCATGGAAAAGCATTAATGATCC 548
Query 360 TTCAACTGGCGATTACACTTA 380
|||||||||||||||||||||
Sbjct 549 TTCAACTGGCGATTACACTTA 569
> Ahg891791 jgi|Araly1|891791|Al_scaffold_0007_3777
Length=2316
Score = 553 bits (299), Expect = 4e-157
Identities = 354/381 (93%), Gaps = 2/381 (1%)
Strand=Plus/Plus
Query 1 ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTC 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 190 ATGTGGTACCGAAAGCTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACAATCCACTC 249
Query 61 TCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACT 120
|||||||| ||||||||||| |||||||| | |||||||||||| ||| |||||||||||
Sbjct 250 TCCAAGCCTATCGGAACACTCAAAATCTTCAGTAACAACCTCCATCTCTTTGATCATACT 309
Query 121 AGTAACTCCGTTTGGTCAACCCAA-GTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGC 179
|||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||||||
Sbjct 310 AGTAACTCTGTTTGGTCAACC-AATGTGACTGGCCAAAGTCTGAAGTCGGACCTGACCGC 368
Query 180 CGAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAACAACAACGAGACAAGTGG 239
||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 369 CGAGCTTCTTGACAATGGCAACTTGGTATTGCGATACTCCAGTAACAACGAGACAAGTGG 428
Query 240 ATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGG 299
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 429 ATTTTTATGGCAAAGCTTCGACTTTCCGACGGATACATTACTCCCTGATATGAAACTGGG 488
Query 300 TTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCC 359
||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||
Sbjct 489 TTGGGATAAGAAGTCGGGTCTAAATAGGATACTAAAATCATGGAAAAGCATTAATGATCC 548
Query 360 TTCAACTGGCGATTACACTTA 380
|||||||||||||||||||||
Sbjct 549 TTCAACTGGCGATTACACTTA 569
> Ahg891733 jgi|Araly1|891733|Al_scaffold_0007_3719
Length=2451
Score = 553 bits (299), Expect = 4e-157
Identities = 354/381 (93%), Gaps = 2/381 (1%)
Strand=Plus/Plus
Query 1 ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTC 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 190 ATGTGGTACCGAAAGCTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACAATCCACTC 249
Query 61 TCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACT 120
|||||||| ||||||||||| |||||||| ||||| |||||||||||| |||||||||||
Sbjct 250 TCCAAGCCTATCGGAACACTCAAAATCTTCAATAATAACCTCCACCTCTTTGATCATACT 309
Query 121 AGTAACTCCGTTTGGTCAACCCAAGTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGCC 180
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 310 AGTAACTCTGTTTGGTCAACCCAAGTGACTGGCCAAAGTCTGAAGTCGGACCTGACCGCC 369
Query 181 GAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAAC-AACAACGAGACAAGTGG 239
|||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||
Sbjct 370 GAGCTTCTTGACAACGGCAACTTGGTATTGCGATACTCCAATGAA-AACGAGACAAGTGG 428
Query 240 ATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGG 299
|||| |||||||||| |||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 429 ATTTCTATGGCAAAGTTTCGACTTTCCGACGGATACATTACTCCCTAATATGAAAGTGGG 488
Query 300 TTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCC 359
|||||||||||| || |||||||||||||||||||||||||||||| || ||||||||
Sbjct 489 TTGGGATAAGAATTCTGGTCTAAATAGGATATTACAATCATGGAAAGGCATTAATGATCC 548
Query 360 TTCAACTGGCGATTACACTTA 380
|||||||||||||||||||||
Sbjct 549 TTCAACTGGCGATTACACTTA 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14079412341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5