BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39370.1 Length=393 Score E Sequences producing significant alignments: (Bits) Value Ahg891804 jgi|Araly1|891804|Al_scaffold_0007_3790 553 4e-157 Ahg891791 jgi|Araly1|891791|Al_scaffold_0007_3777 553 4e-157 Ahg891733 jgi|Araly1|891733|Al_scaffold_0007_3719 553 4e-157 > Ahg891804 jgi|Araly1|891804|Al_scaffold_0007_3790 Length=2316 Score = 553 bits (299), Expect = 4e-157 Identities = 354/381 (93%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 1 ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTC 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || Sbjct 190 ATGTGGTACCGAAAGCTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACAATCCACTC 249 Query 61 TCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACT 120 |||||||| ||||||||||| |||||||| | |||||||||||| ||| ||||||||||| Sbjct 250 TCCAAGCCTATCGGAACACTCAAAATCTTCAGTAACAACCTCCATCTCTTTGATCATACT 309 Query 121 AGTAACTCCGTTTGGTCAACCCAA-GTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGC 179 |||||||| |||||||||||| || |||||| ||||||||||||||||||| |||||||| Sbjct 310 AGTAACTCTGTTTGGTCAACC-AATGTGACTGGCCAAAGTCTGAAGTCGGACCTGACCGC 368 Query 180 CGAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAACAACAACGAGACAAGTGG 239 ||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||| Sbjct 369 CGAGCTTCTTGACAATGGCAACTTGGTATTGCGATACTCCAGTAACAACGAGACAAGTGG 428 Query 240 ATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGG 299 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| Sbjct 429 ATTTTTATGGCAAAGCTTCGACTTTCCGACGGATACATTACTCCCTGATATGAAACTGGG 488 Query 300 TTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCC 359 ||||||||||||||||||||||||||||||| || |||||||||||| || |||||||| Sbjct 489 TTGGGATAAGAAGTCGGGTCTAAATAGGATACTAAAATCATGGAAAAGCATTAATGATCC 548 Query 360 TTCAACTGGCGATTACACTTA 380 ||||||||||||||||||||| Sbjct 549 TTCAACTGGCGATTACACTTA 569 > Ahg891791 jgi|Araly1|891791|Al_scaffold_0007_3777 Length=2316 Score = 553 bits (299), Expect = 4e-157 Identities = 354/381 (93%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 1 ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTC 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || Sbjct 190 ATGTGGTACCGAAAGCTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACAATCCACTC 249 Query 61 TCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACT 120 |||||||| ||||||||||| |||||||| | |||||||||||| ||| ||||||||||| Sbjct 250 TCCAAGCCTATCGGAACACTCAAAATCTTCAGTAACAACCTCCATCTCTTTGATCATACT 309 Query 121 AGTAACTCCGTTTGGTCAACCCAA-GTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGC 179 |||||||| |||||||||||| || |||||| ||||||||||||||||||| |||||||| Sbjct 310 AGTAACTCTGTTTGGTCAACC-AATGTGACTGGCCAAAGTCTGAAGTCGGACCTGACCGC 368 Query 180 CGAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAACAACAACGAGACAAGTGG 239 ||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||| Sbjct 369 CGAGCTTCTTGACAATGGCAACTTGGTATTGCGATACTCCAGTAACAACGAGACAAGTGG 428 Query 240 ATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGG 299 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| Sbjct 429 ATTTTTATGGCAAAGCTTCGACTTTCCGACGGATACATTACTCCCTGATATGAAACTGGG 488 Query 300 TTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCC 359 ||||||||||||||||||||||||||||||| || |||||||||||| || |||||||| Sbjct 489 TTGGGATAAGAAGTCGGGTCTAAATAGGATACTAAAATCATGGAAAAGCATTAATGATCC 548 Query 360 TTCAACTGGCGATTACACTTA 380 ||||||||||||||||||||| Sbjct 549 TTCAACTGGCGATTACACTTA 569 > Ahg891733 jgi|Araly1|891733|Al_scaffold_0007_3719 Length=2451 Score = 553 bits (299), Expect = 4e-157 Identities = 354/381 (93%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 1 ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTC 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || Sbjct 190 ATGTGGTACCGAAAGCTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACAATCCACTC 249 Query 61 TCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACT 120 |||||||| ||||||||||| |||||||| ||||| |||||||||||| ||||||||||| Sbjct 250 TCCAAGCCTATCGGAACACTCAAAATCTTCAATAATAACCTCCACCTCTTTGATCATACT 309 Query 121 AGTAACTCCGTTTGGTCAACCCAAGTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGCC 180 |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 310 AGTAACTCTGTTTGGTCAACCCAAGTGACTGGCCAAAGTCTGAAGTCGGACCTGACCGCC 369 Query 181 GAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAAC-AACAACGAGACAAGTGG 239 |||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||| Sbjct 370 GAGCTTCTTGACAACGGCAACTTGGTATTGCGATACTCCAATGAA-AACGAGACAAGTGG 428 Query 240 ATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGG 299 |||| |||||||||| |||| ||||||||||||||||||||||| | ||||||||||||| Sbjct 429 ATTTCTATGGCAAAGTTTCGACTTTCCGACGGATACATTACTCCCTAATATGAAAGTGGG 488 Query 300 TTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCC 359 |||||||||||| || |||||||||||||||||||||||||||||| || |||||||| Sbjct 489 TTGGGATAAGAATTCTGGTCTAAATAGGATATTACAATCATGGAAAGGCATTAATGATCC 548 Query 360 TTCAACTGGCGATTACACTTA 380 ||||||||||||||||||||| Sbjct 549 TTCAACTGGCGATTACACTTA 569 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14079412341 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5