BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39380.1
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494047 jgi|Araly1|494047|fgenesh2_kg.7__3480__AT5G39380.1 2174 0.0
> Ahg494047 jgi|Araly1|494047|fgenesh2_kg.7__3480__AT5G39380.1
Length=1872
Score = 2174 bits (1177), Expect = 0.0
Identities = 1388/1489 (93%), Gaps = 18/1489 (1%)
Strand=Plus/Plus
Query 43 ATGATGAATAAGGAAGATGGTT-TGAATCCGGGAGGTGATTCTACAGGGAAGGCAATGAC 101
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 1 ATGATGAATAAGGAAGATGGTTCT-AGCCCGGGAGGTGATTCTACAGGGAAGGCAATGGC 59
Query 102 TTCAAAGCCTAAAGAGAAAAAGATTCCTCATTATCTCAGAGCATCAACTGGTTCGTGTCA 161
||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 60 TTCAAAGTCTAAAGAGAAAAAGATCCCTCATTACCTCAGAGCATCCACTGGTTCGTGTCA 119
Query 162 TGATTTGTGTAAGTATGGGAAGAGACAGATACCTGTGGAGAAACCATGGCGTTCGAGTAC 221
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 TGATTTGTGCAAGTATGGGAAGAGACAGATACCTGTGGAGAAACCATGGCGTTCGACTAC 179
Query 222 TAAAAAGATCTTCAAGAAATCTCTTGATGATAATTTGAATGAGACTTTGAAGCCGGGTTC 281
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 180 TAAAAAGATCTTCAAGAAATCTCTTGATGATGATTTGAATGAAACTTTGAAGCCGGGTTC 239
Query 282 TTCTAAAATGAAGAAGAAGGTGAGGGAAGTCGAGAAAAACGA-GGGTACTGATGATTCTT 340
|||| ||| | ||||||||| | ||| ||| ||||||| | || || |||||||||||
Sbjct 240 TTCT-AAA-G-TGAAGAAGGTAATGGATGTCAAGAAAAA-AATGGTTAGTGATGATTCTT 295
Query 341 TTGAGGTGATTAAAAGAGAGGTTGTGAAGTATCAAGCGAGTGGTGTCTCTAGTGGGATGA 400
|||||||| |||||||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 296 CGGAGGTGATAAAAAGAGAGGTTGTGAAGCATCAAGTGAGTGGTGTCTCTAGTGGGGTGA 355
Query 401 GGAAGCCAGAGGTATTGATAATATCATCTTGTGATGAAACTCCTGTGAAGCAGATAAAGA 460
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 356 AGAAGCCAGAGGTATTGATAATATCATCTGGTGATGAAACTCCTGTGAAGCAGATGAAGA 415
Query 461 AGAAGACAACATTAAGTTCCAAACTTAAACCTTCACCAGATTTGGGATCTCGTTCATCAG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGAAGACAACATTAAGTTCCAAACTTAAACCTTCACCAGATTTGGGATCTCGTTCATCAG 475
Query 521 AAAATGTTGATGCCCTGAAGCCAAAAGTCTTGAA-GAAATCTTATTCAGCACTGA-CAAC 578
||||||||||||||||||||| ||||| || || |||||| ||||||||||| | ||||
Sbjct 476 GAAATGTTGATGCCCTGAAGCCGAAAGT-TTTAACGAAATCGTATTCAGCACT-AGCAAC 533
Query 579 GTCGAAACCAAAAGTAAACCATGAAAAAG-TTGTTGCGTCACCAGTTTTGAAACCTAAAA 637
|||||| | || |||||||||| || |||||| ||||||||||||||||||||||
Sbjct 534 ATCGAAATCTAAGGTAAACCATG----AGCCTGTTGCTTCACCAGTTTTGAAACCTAAAA 589
Query 638 TGGGTAAAAGAAATGATGGAAAAGACGAAGATGGAAAGGTCAAGAAGGGTACAGTTTCCT 697
|||||||||||| ||| |||||||| || |||| |||| | ||||||| |||||||||||
Sbjct 590 TGGGTAAAAGAAGTGAAGGAAAAGAAGATGATGCAAAGATAAAGAAGGTTACAGTTTCCT 649
Query 698 CAAGAGTAGCTTCTAAGAAGGCTCCGGTGACTCCAAGAGCGTCGCTTTCTCCAAGATTAT 757
||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 650 CAAGAGTTGCTTCTAAGAAGGTTCCGGTGACTCCTAGAGCGTCGCTTTCTCCAAGATTAT 709
Query 758 CAGTAAGACTAGCTGGAAGTTCAAGTTTGAGAAAGAGTCAGAGCTTAAAGG-CTGCATCT 816
|| ||||| ||||||||| |||||||||||||||||||||||||||||||| | || |||
Sbjct 710 CACTAAGAGTAGCTGGAAATTCAAGTTTGAGAAAGAGTCAGAGCTTAAAGGCCGGC-TCT 768
Query 817 TCCTCTTCTCGACAAAATCAGAAACCGAGACCCGTGAATCGCACTGATGAATTTAATAAA 876
||||||||||| |||||||||||||| | || ||||||| ||||||||||| ||||||
Sbjct 769 TCCTCTTCTCGGCAAAATCAGAAACCAAAACGTGTGAATCACACTGATGAATCTAATAAG 828
Query 877 CAGTTGGATGATTATCCAGTCGAGGAGAAAACATTGCACGTTGTTGAAATGGAAACAACT 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CAGTTGGATGATTATCCAGTCGAGGAGAAAACATTGCACGTTGTTGAAATGGAAACAACT 888
Query 937 AACAATGTCGTCTCTGAGAATGATCAGAATCAGCAAGGATTTGTTGAACCTTTTCTTCCT 996
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 AACAATGTCGTCTCTGAAAATGATCAGAATCAGCAAGGTTTTGTTGAACCTTTTCTTCCT 948
Query 997 CCTCTTCCACCGACCCAATCAACTCCAAAAGATGATGAGTGTACTGTTTCAGAAACAGAG 1056
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CCTCTTCCACCGACCCACTCAACTCCAAAAGATGATGAGTGTACTGTTTCAGAAACAGAG 1008
Query 1057 GAGTACGAATACACTTCAGGAAGCAACGAAGCTGAGAGCGAAGAAGAAGAGATTGGATTG 1116
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GAGTATGAGTACACTTCAGGAAGCAACGAAGCTGAGAGCGAAGAAGAAGAGATTGGATTG 1068
Query 1117 TCCAATGGAGAGAAGAAACCAAGAGCGGCGAGAAAGGAGGGTGATTCTGCAGATGAAGCT 1176
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TCCAATGGAGAGAAAAAAACAAGAGCGGCGAGAAAGGAGGGTGATTCTGCAGATGAAGCT 1128
Query 1177 GCACGGAAGTTACGTTTCAGAAGAGGAACAATTGTGGATCCTGATACTGTAGGTGAGAAA 1236
|| ||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 1129 GCTCGGAAGTTACGTTTCAGAAGAGGAAAAATTGTGGATGCTGATACTGTGGGTGAGAGT 1188
Query 1237 GCAAGGAAGCTCAAGTTTAGACGAGGAAGGGGTCTAGGGGAAGACAAAGCGCAAGATGCA 1296
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1189 GCAAGGAAGCTCAAGTTTAGACGAGGAAGGGATCTAGGGGAAGACAAAGCGCAAGATGCT 1248
Query 1297 CAAGTTAGGAGAAGCTTTAAGAAGAGGGAAGATATCAGAGAAGAAGAAGTCAATGAGGAT 1356
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1249 CAAGTTAGGAGAAGCTTTAAGAAGAGGGAAGATATCAGAGGAGAAGAAGTCGATGAGGAT 1308
Query 1357 GGTGAAAAAGTTGTGTTGAGGCATCAAGATGTTCAGGAGAAAGATGCACAGGGACTGTTC 1416
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1309 GGTGAAAAAGTTGTGCTGAGGCATCAAGATGTACAGGAGAAAGATGCACAGGGACTGTTC 1368
Query 1417 AACAATGTCATTGAAGAAACAGCGAGTAAACTCGTCGAAGCTCGAAAAAGCAAAGTTAAG 1476
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1369 AACAATGTCATTGAAGAAACAGCGAGTAAACTCGTTGAAGCTCGAAAAAGCAAAGTTAAA 1428
Query 1477 GCTTTGGTTGGTGCTTTCGAAACCGTTATTTCTCTTCAAGAATCTTAAA 1525
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1429 GCTTTGGTTGGTGCTTTCGAAACCGTCATTTCTCTTCAAGAATCTTAAA 1477
Score = 492 bits (266), Expect = 5e-138
Identities = 366/408 (90%), Gaps = 31/408 (8%)
Strand=Plus/Plus
Query 1569 AGCTAACATTGAGTCTCTATGATTTTTCTAGTAGTAGTAGTTTATTTGGTTTTGGTTTCT 1628
|||||||||||| ||| | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1477 AGCTAACATTGAATCT-T-TGA-TTTTC---TAGTAGTAGTTTATTTGGTTTTGGTTTCT 1530
Query 1629 AGATTGAGCCGGTGTGAATCGTTT---T--GTTGAAC-TGAAGAAGATT-GATACTTCAT 1681
||||||||||||| |||||||||| | ||||||| ||||||||||| ||| ||||||
Sbjct 1531 AGATTGAGCCGGTTTGAATCGTTTCGGTTTGTTGAACCTGAAGAAGATTTGATGCTTCAT 1590
Query 1682 AGAAAGTTAAAGG-T----CTCTGCCAAACATT--T-G-G-TGCTTTGTGAATAATACTT 1731
| ||||||||||| | |||||||||||||| | | | |||||||||||||||||||
Sbjct 1591 ACAAAGTTAAAGGATATGTCTCTGCCAAACATTAATAGTGGTGCTTTGTGAATAATACTT 1650
Query 1732 TGATGGATTGGGGTTTGTGTTTGGTTTCGGTTCTTCTAGACCGGTTTGTTGGTTTTCATT 1791
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1651 -GATGGATTGGGGTTTGTGTTTGGTTTTGGTTCTTCTAGACCGGTTTGTTGGTTTTCATT 1709
Query 1792 GGATTGTTTGGGTTTATGATTCAATTTGTATAGAAAAATTCTGGTCTAGTTT-CTTACAT 1850
|||||||||||||||||| |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct 1710 GGATTGTTTGGGTTTATGGTTCAGTTTGTATAGAAAAATTCTGCTCT-GTTTTCTTACAT 1768
Query 1851 TTGTTGTTGGTTTTTGTCTTCTTGTAGAAA-GAAGCACTTTCAATAGGTTTTCTTTCTGC 1909
|||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1769 TTGTTGTTGGTTTTTGTCTT---GTA-AAACGAAGCACTTTCAATAGGTTTTCTTTCTGC 1824
Query 1910 TTAAACCGGATCGTAAACCGTAATTTCTGGTTTTGCAGAACACCGATC 1957
|||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1825 TTAAACCGGATCCTAAACCGTATTTTCTGGTTTTGCATAACACCGATC 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5