BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39400.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330553 jgi|Araly1|330553|fgenesh1_pm.C_scaffold_7002780 2030 0.0
> Ahg330553 jgi|Araly1|330553|fgenesh1_pm.C_scaffold_7002780
Length=1239
Score = 2030 bits (1099), Expect = 0.0
Identities = 1194/1240 (96%), Gaps = 6/1240 (0%)
Strand=Plus/Plus
Query 137 ATGGGTCTCAAGCTCTCACGAGGGCCTGTAAAAGAAAAATCACCTTTGGAATTCACAAGG 196
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||
Sbjct 1 ATGGGTCTCAAGCTCTCAAGAGGGCCTGTAAAAGAAAAATCAACTTTGGAATTTACGAGG 60
Query 197 GTTCACATTCTGACTTA-CTTCACCACAAATTCTTACCTACGTAACTTGGTGTCCAAGAA 255
||||||||||| ||||| ||| | ||||| |||||||||||||| |||||||||||||||
Sbjct 61 GTTCACATTCTAACTTACCTT-AGCACAAGTTCTTACCTACGTAGCTTGGTGTCCAAGAA 119
Query 256 ACGAAGACGGTTAATCATCGGTGGATATGATCTCGACATGTCTTACATCTCCGACAAATT 315
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 ACGAAGACGGTTAATCATCGGTGGATATGATCTCGACATGTCTTACATCTCTGACAAATT 179
Query 316 ATTGGCAATGTCTTTTCCAGCTGAACGAATGAGAGCAGTCTATAGAAACCCTCTTTGGCA 375
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 ATTGGCAATGTCTTTTCCAGCTGAACGAATGAGAGCAGTTTATAGAAACCCTCTTTGGCA 239
Query 376 AGTCAAGTCCGTGCTCGATATGCGACATCCTGATCATTACAAGGTCTATAATCTATGTAT 435
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTCAAATCCGTGCTCGATATGCGACATCCTGATCATTACAAGGTCTATAATCTATGTAT 299
Query 436 AGAGGAATCTTATGATCCAGACAACTTTTATGGCCGCGTGGAGCGATTTCCGTTTGATGA 495
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 300 AGAGGAATCTTATGATCCAGAAAACTTCTATGGCCGCGTGGAACGATTTCCGTTTGATGA 359
Query 496 CAATCATGTTCCATCCCTCAAAATGATCCAACTTTTCTGTGAAAGTGTTCATTCTTGGCT 555
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 CAATCATGTTCCATCTCTCAAAATGATCCAACTTTTCTGCGAAAGTGTTCATTCTTGGCT 419
Query 556 CTCATTAGATCCCAAGAACATCGCGGTTGTTCATTGCATGGCAGGAAAAGGTAGAACAGG 615
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 CTCACTAGATCCCAAGAACATCGCGGTTGTTCATTGCATGGCAGGAAAAGGCAGAACAGG 479
Query 616 GCTAATGGTATCGGCGTACCTTGTTTACGGTGGCATGTCAGCTGAAGAAGCTCTTGAGAT 675
| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 480 GTTAATGGTATCGGCGTACCTTGTTTATGGTGGAATGTCAGCTGAAGAAGCTCTTGAGAT 539
Query 676 GTATGCAAGCAGAAGAACAACAAACAATAATGGAGTCTCAATACCAAGCCAACGTCGTTA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTATGCAAGCAGAAGAACAACAAACAATAATGGAGTCTCAATACCAAGCCAACGTCGTTA 599
Query 736 TGTGAAGTACTGGTCAGATTTACTTTCG-TTCAGTAAAAAAGGACCTCCCGAGGTTAAAT 794
|||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 600 TGTGAAATACTGGTCAGATTTACTTTCGTTTC-GTAAAAGGGGACCTCCCGAGGTTAAAT 658
Query 795 TACCGCAAGAACATAGCAGAGAGTTG-TTGCGAATTAGACTTTATGATACAGCTAACGTT 853
|||| ||||||||||||||||||||| || |||||||||||||| |||||||| ||||||
Sbjct 659 TACCTCAAGAACATAGCAGAGAGTTGCTT-CGAATTAGACTTTACGATACAGCCAACGTT 717
Query 854 GATTCCGTCTTCTTTGTGGTTTCAGAACTTCAGGAGGTTCCAAATGAGATGTATCGACCG 913
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 718 GATTCCGTCTTCTTTGTGGTCTCGGAACTTCAGGAGGTTCCAAATGAGATGTATCGACCG 777
Query 914 TCTGTAGAACTTGCAAGAGGTTGTTGTAGACAATTCAAGAAAGGGTATTGTAGAAGTTCG 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 TCTGTAGAACTTGCAAGAGGTTGTTGTAGACAATTCAAGAAAGGGTATTGTAGAAGCTCG 837
Query 974 AGTCCACGGTATTATATATCTCATGTGAACTGTGATTCAGAAGAAGATGAGGAAGTAACA 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGTCCACGGTATTATATATCTCATGTGAACTGTGATTCAGAAGAAGATGAGGAAGTAACA 897
Query 1034 GACGGAGAAGAGCCACATCTTGTTGTTCAGATGGATACAGAGAGTTCCATTATCGACGAA 1093
|| ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 898 GATGGAGAAGAGCCACGTCTTGTTGTTCAAATGGATACAGAGAGTTCAATTATCGACGAG 957
Query 1094 AAAACTTGTCTTGATTTCTACTTTGACAAACCTGTGAGAGTTAGTGGTGACATACGCATC 1153
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 958 AAAACATGTCTTGATTTCTACTTTGACAAACCTGTGAGAGTGAGTGGAGACATACGCATC 1017
Query 1154 ACATTCTACCAGAAAATGATTGGAAGCCGCCTTTTTTATACTTGCTTCAACACAGCTTTT 1213
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 ACATTCTACCAGAAAATGATTGGAAGCCGTCTTTTTTATACTTGCTTCAACACAGCTTTT 1077
Query 1214 ATAACCAATGGCTTACTTCAGTTTTCCATAGGAGAGCTAGATAAAGTTGGTGGTAACGGA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATAACCAATGGCTTACTTCAGTTTTCCATAGGAGAGCTAGATAAAGTTGGTGGTAACGGA 1137
Query 1274 AGATCGATATCTGGTCCTGATTTTAGCTTGGAGTTACTCTTTGGCCCAGCTTGTTCGAAA 1333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 AGATCGATATCTGGTCCTGATTTTAGCTTGGAGTTACTCTTTGGCCCAGCTTGTTCAAAA 1197
Query 1334 TTCGGAAAGTTTCTTTCCCGCGATGACCTTTCTCTCTCTT 1373
||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTCGGAAAGTTTCTTTCCCGCGATGACCTTTCTCTCTCTT 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5