BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39410.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494045 jgi|Araly1|494045|fgenesh2_kg.7__3478__AT5G39410.1 2625 0.0
> Ahg494045 jgi|Araly1|494045|fgenesh2_kg.7__3478__AT5G39410.1
Length=1615
Score = 2625 bits (1421), Expect = 0.0
Identities = 1559/1625 (96%), Gaps = 11/1625 (1%)
Strand=Plus/Plus
Query 100 AACCCAAAAAGATTCTCCGTCTTAGATTCCGATCACGATGAACCCAACCCAAAAACCCGA 159
||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 AACCCAAAAAGTTTCTCCGTCTTCGATTCCGATCACAATGAACCCAACCCAAAAACCCGA 60
Query 160 ACCGGTTTACGATATGGTCATACTCGGAGCATCCGGATTTACCGGTAAGTACGTCGTCAG 219
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 CCCGGTTTACGATATCGTCATACTCGGAGCATCCGGATTTACCGGCAAATACGTCGTCAG 120
Query 220 AGAAGCTCTCAAGTTCCTTCAAACACCGTCTTCTTCTCCGTTAAAGTCTCTAGCTTTAGC 279
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 121 AGAAGCTCTCAAGTTCCTTCAAACA-C--CATCTTCTCCGTTAAAGTCTCTAGCTTTAGC 177
Query 280 GGGTCGTAACCCGACCCGTTTAACCCAATCTCTCGAATGGGCCGCCCGCCCGAACCCACC 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGGTCGTAACCCGACCCGTTTAACCCAATCTCTCGAATGGGCCGCCCGCCCGAACCCACC 237
Query 340 ACCTTCCTCTGTCGCTATCCTCACTGCTGATACATCTGACCCTGATTCACTTCGTCGTCT 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCCTTCCTCTGTCGCTATCCTCACTGCTGATACATCTGACCCTGATTCACTTCGTCGTCT 297
Query 400 CTGTACTCAAACCAAACTCATCCTCAATTGTGTTGGACCGTTTCGTATCCATGGTGATCC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTGTACTCAAACCAAACTCATCCTCAATTGTGTTGGACCGTTTCGTATCCATGGTGATCC 357
Query 460 TGTCGTCTCTGCTTGTGCTGATTCAGGGTGTGATTATTTGGATATAAGTGGTGAACCTGA 519
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGTTGTCTCTGCTTGTGCTGATTCAGGGTGTGATTATTTGGATATAAGTGGTGAACCTGA 417
Query 520 GTTTATGGAGAGAATGGAAGCTAACTACCATGATAGAGCAGAAGAGACTGGCTCTTTAAT 579
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 GTTCATGGAGAGAATGGAAGCTAACTACCATGAAAGAGCAGAAGAGACTGGCTCTTTAAT 477
Query 580 CGTTTCTGCTTGTGGTTTTGATTCAATTCCTGCTGAATTGGGTCTTCTCTTTAATGCTAA 639
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 478 TGTTTCTGCTTGTGGTTTTGATTCGATTCCTGCTGAATTGGGTCTTCTCTTCAATGCTAA 537
Query 640 ACAATGGGTATCTCCATCGGTTCCTAACCAGATTGAAGCGTACCTTAGCTTGGAGTCTGA 699
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 ACAATGGGTACCTCCATCGGTTCCTAACCAGATCGAAGCGTACCTTAGCTTGGAGTCTGA 597
Query 700 CaaaaaaaTTGCTGGGAACTTTGGGACTTATGAGTCTGCGGTTTTAGGTGTTGCTAATGC 759
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAAAAAGATTGCTGGAAACTTTGGGACTTATGAGTCTGCGGTTTTAGGTGTTGCTAATGC 657
Query 760 AGAAAAGCTTAAAGAATTAAGACGTTCAAGACCAAGAAGGCCAAGACCAACGATTTGTGG 819
||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 GGAAAAGCTTAAAGAACTGAGACGTTCAAGACCAAGAAGGCCAAGACCATCGATTTGTGG 717
Query 820 TCCTCCTGCTAAAGGACCAACATTAGAAAACCAGAAGACGATTGGTCTTTGGGCTTTAAA 879
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 718 TCCTCCTGCTAAAGGACCAACACTAGAAAACCAGAAGACGATAGGTCTTTGGGCTTTAAA 777
Query 880 GCTACCTTCAGCTGATGCAGTAGTTGTTCGTAGAACTCTCACAACTCTAACAGAGAAACC 939
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCTACCTTCTGCTGATGCAGTAGTTGTTCGTAGAACTCTCACAACTCTAACAGAGAAACC 837
Query 940 ACATGGGCTTCCTGGGATTAATGAAAGTCCTGAGCAGATACAAAAGAGAGAAGCATTCTG 999
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 ACATGGGCTTCCTGGGCTTAATGAAAGTCCTGAGCAGATACAAAAGAGAGAAGCATTTTG 897
Query 1000 GTCATCGATCAAGCCTGCTCATTTTGGTGTAAAGATAACGTCCAAATCTCTCTTTGGGAT 1059
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 898 GTCATCGATCAAGCCAGCTCATTTCGGTGTAAAGATAACATCCAAATCTCTCTTTGGGAT 957
Query 1060 ATTCCGATATGTTACACTTGGAGTGTCACTTGGTTTACTTTCCAAGTTCTCCTTCGGAAG 1119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 ATTCCGATATGTTACACTTGGAGTGTCCCTTGGTTTACTTTCCAAGTTCTCCTTCGGAAG 1017
Query 1120 ATGGCTTCTTTTGAAATTCCCTTCAGTTTTCAGCCTTGGTTGGTTCCAGAAGAAAGGTCC 1179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 ATGGCTTCTTTTGAAATTCCCTTCGGTTTTCAGCCTTGGTTGGTTCCAGAAGAAAGGTCC 1077
Query 1180 AAGTGAAGAAGAGGTAGAAAGCGCTACGTTTAAGATGTGGTTCATAGGTCGTGGGTACAG 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGTGAAGAAGAGGTAGAAAGCGCTACGTTTAAGATGTGGTTCATAGGTCGTGGGTACAG 1137
Query 1240 CGAAGAGAGTCTAGCTTCACAAGGAGAAACAAAGCCTGACTTGGAAATCATTACAAGAAT 1299
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1138 CGAAGAGAGTCTAGCTTCACAAGGAGAAACAAAGCCTGACCTGGAAATTATTACAAGAAT 1197
Query 1300 TTCAGGACCTGAGATTGGATATATAACCACCCCGATAACACTTGTTCAATGCGGTTTGAT 1359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1198 TTCAGGACCTGAGATTGGGTATATAACCACCCCGATAACACTTGTTCAATGCGGTCTGAT 1257
Query 1360 AGTCTTGGGCCAGCGCGAAAGCCTAGTTAAAGGAGGAGTCTACACACCCGGCATTGTGTT 1419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGTCTTGGGCGAGCGCGAAAGCCTAGTTAAAGGAGGAGTCTACACACCCGGCATTGTGTT 1317
Query 1420 TGGTTCAACCGATATCCAGCAGCGACTTGAGGATAATGGTATATCTTTTGAGCTGATTTC 1479
|||||||||| ||||||||||||||||||| || ||||||||||| |||||| |||||||
Sbjct 1318 TGGTTCAACCAATATCCAGCAGCGACTTGAAGAGAATGGTATATCCTTTGAGGTGATTTC 1377
Query 1480 AAAGATCAAGACTCAAGGATAAAAAGAGATCTCTTATCCTGCTTTTCTATTCTGTTTTTA 1539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1378 AAAGATCAAGACTCAAGGATAAAAAGAGATCTCTTCTCCTGCTTTTCTATTCTGTTTTTA 1437
Query 1540 GTTGTTATGTT-ATGCTTCACAGTGACATTGAAGACAGTTTGATGGTAAGTTGTATTCCA 1598
||||||||||| | |||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1438 GTTGTTATGTTTA-GCTTTTCAGTCACAGTGAAGACAGTTTGATGGTAAGTTGTATTCCA 1496
Query 1599 ATAATAATAAAACTGTTTCCTTTACGTTTGCTATGGAGATATGTATGTACTCAAAACAGA 1658
||||| | ||||| ||||||||||| ||| ||||||| | | |||||||||||||||||
Sbjct 1497 ATAATGA-AAAACCGTTTCCTTTACTTTTACTATGGA--T-T-TATGTACTCAAAACAGA 1551
Query 1659 GAATGTGGTTCTTAAAACTGGAAACAGACCATCTTAATGaaaaaaaTGGATGGTAAGAGA 1718
|||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1552 GAATCTGGTTCTTAAAACTGGAAACAGACCATCCTAGTGAAAAAA-TGGATGGTAAGAGA 1610
Query 1719 ATCCC 1723
|||||
Sbjct 1611 ATCCC 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5