BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39430.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891786 jgi|Araly1|891786|Al_scaffold_0007_3772 2209 0.0
Ahg896869 jgi|Araly1|896869|Al_scaffold_0005_835 1013 0.0
> Ahg891786 jgi|Araly1|891786|Al_scaffold_0007_3772
Length=1551
Score = 2209 bits (1196), Expect = 0.0
Identities = 1437/1549 (93%), Gaps = 34/1549 (2%)
Strand=Plus/Plus
Query 1 ATGGGTACATGTATGTCAACACATTCAAGAAGACTTAGGCCACGAAGGAAAGGCCGTCGC 60
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 1 ATGGGTACATGTATGTCAACTCATTCAAGAAGAATTAGGCCACGAAGGAAAGGTCGTCGG 60
Query 61 AGATTTTCTAAAA-ACATATCTAAAGTGTCTG------------------ATATTAGACG 101
||| |||| |||| |||| |||| |||||||| ||||||||||
Sbjct 61 AGA-TTTCCAAAACACATTTCTAGAGTGTCTGATATTATTTCTCATCCAAATATTAGACG 119
Query 102 CCTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCATGGTTTGA 161
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 ACTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCGTGGTTTGA 179
Query 162 TTCTTCAAGTCTTTTCTCTGACTCTGATGACGACTTTATTAGCCTACATGAAGCTGATAA 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCTTCAAGTCTTTTCTCTGACTCTGATGACGACTTTATTAGCCTACATGAAGCTGATAA 239
Query 222 TGTTTGGTTAGAGGGTGGCGTAATGGGTAAAATTCCAAATGGTCAAGTGGTTGAGTTTGA 281
|||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||
Sbjct 240 TGTTTGGTTAGAGGGTGGTGTAATGGGTAATATTCCAAATGGTCAGGTGGTTCAGTTTGA 299
Query 282 GGCTTCTTCATGCATTGTTGATGGAAATGGAAATTACGAAGAATACCATGAGAGTTACTT 341
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GACTTCTTCATGCATTGTTGATGGAAATGGAAATTATGAAGAATACCATGAGAGTTACTT 359
Query 342 GAAGATTGATGGCGGTAATAAAATCGAGAAGTTTATGAGCAACGGTTTATATAAAGATAC 401
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 GAAAATTGATGGCGGCAATAAAATCGAGAAGTTTATGAGCAACGGTTTATACAAAGATAC 419
Query 402 TAATGGTTTGTCTGGTATTATTGGAAACAACAAGAAGAAAC---T--A-AATACTTATAG 455
|||| |||||||| ||| | ||||||||||||||| |||| | | ||||||||||
Sbjct 420 TAATAGTTTGTCTATTATCACTGGAAACAACAAGAATAAACAATTGGACCATACTTATAG 479
Query 456 TAGCTTTAAAGGATTGAAAGAGTTAGACCCTAACCCTAAAGAAAAAGCATTAAAATCCAA 515
|||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 480 AAGCTTTAAAGTATTGAAAGAAATAGACCCTAACCCTCAAGAAAAAACATTAAAATCCAA 539
Query 516 TTTGAGCCGGTTGATGCCATTGCCAACGGTTAGTTTCAACGACAAAACTCTGAACTCCCC 575
|||||||||| | || | ||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 540 TTTGAGCCGG-T--TG--A-TGCCAACCGTTAGTTTCAACGACAAGACTCTAAACTCCCC 593
Query 576 CACATCTCAAAACCGGAAGTCAGCGGTTTATCAGGTTTCTTTCAAGAGAAGATCATGTGA 635
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 594 CACATCTCAAAAGCGGAAGTCAGCGGTTTATCAGACTTCTTTCAAGAGGAGATCATGTGA 653
Query 636 TGGTGAAGAAGTTACCGAACATAGGTCGTCGAAAAGATTGTTGTACCGTCCCAAAGCCGG 695
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 TGGTGAAGAAGTTACCGAGCATAGGTCGTCCAAAAGATTGTTGTACCGTCCCAAAGCCGG 713
Query 696 ATACACGATTCCGTGCTATGTCAAAGAGAAGCATCAATCATCAGGAAGTTGGTGTGAGAT 755
|||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 714 ATACACCATTCCGTGCTATGCCAATGAGAAGCAGCAATCATCAGGAAGTTGGTGTGAGAT 773
Query 756 ACCTCCATCAAACTTGAAGTTACGTGGCGAAACTTATTTCAAAGATAAACGAAAACACCC 815
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 774 ACCTCCTTCAAACTTGAAATTACGTGGCGAAACTTATTTCAAAGATAAACGAAAATATCC 833
Query 816 GGCTCCAAACCAATGTCCATACACTCCAATTGGTGTTGACTTGTTTGTGTGTCCAAGGAA 875
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 834 GGCTCCAAACCAATGTCCATACACTCCAATTGGTGTTGACTTGTTTGTGTGTCCAAAAAA 893
Query 876 GATTGATCATATAGCCCAACACATTGAGCTTCCCAACATCAAAGCTGTGGCAAACCTCCC 935
||||||||||||||||||||||||||| ||||||||||||||||| | || || ||||
Sbjct 894 GATTGATCATATAGCCCAACACATTGAACTTCCCAACATCAAAGCCGAGGTGAAGTTCCC 953
Query 936 TGCTCTTCTAATTGTCAACATCCAGTTGCCAACTTATCCAGCCGCAATGTTTCTCGGTGA 995
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGCTCTTTTGATTGTCAACATCCAGTTGCCAACTTATCCAGCCGCAATGTTTCTCGGTGA 1013
Query 996 TAGTAACGGAGAAGGCATGAGCATTGTACTTTACTTTAAACTACGAGAAAATTTC-AAAA 1054
|||||| |||||||||||||||||||||||||| |||||| || ||||||||||| ||||
Sbjct 1014 TAGTAATGGAGAAGGCATGAGCATTGTACTTTATTTTAAATTAAGAGAAAATTTCGAAAA 1073
Query 1055 ATGAAATCTCTCAACAATACCAAGACAGCATCAAGAAACTAGTGGAAGATGAGATGGAAA 1114
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1074 A-GAAATCTCTCAACAATACCAAGACAGCATCAAGAAACTAGTGGAGGATGAGATGGAAA 1132
Query 1115 AAGTTAAAGGGTTTGCAAAAGACAACATCGTTCCGTTTCGTGAAAGGCTTAAAATAGTAG 1174
|||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||
Sbjct 1133 AAGTGAAAGGGTTTGCAAAAGACAACATTGTTCCATTTCGTGAACGGCTTAAAATCGTAG 1192
Query 1175 CCGGATTAGTTAACCCAGATGAACTCAGTCTGAGTTCTACTGAAAAGAAGCTTATACAAG 1234
||||||||||||||||||| |||||||| || ||||||||||||| ||||||||||||||
Sbjct 1193 CCGGATTAGTTAACCCAGAGGAACTCAGCCTTAGTTCTACTGAAAGGAAGCTTATACAAG 1252
Query 1235 CTTACAATGAAAAACCCGTGCTTTCTCGCCCTCAACACAACTTCTTCAAGGGTCCTAACT 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CTTACAATGAAAAACCCGTGCTTTCTCGCCCTCAACACAACTTCTTCAAGGGTCCTAACT 1312
Query 1295 ACTTTGAGATTGATTTGGACGTGCATCGGTTTAGCTACCTTTCAAGAAAAGGGCTTGAAG 1354
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1313 ACTTTGAGATTGATTTGGACGTGCATCGGTTTAGCTACCTCTCAAGAAAAGGGCTTGAAG 1372
Query 1355 CATTCAGAGATCGACTCAAAAATGGAACTCTTGATCTCGGCTTAACTATCCAAGCTCAAA 1414
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CATTCAGAGATCGACTTAAAAATGGAACTCTTGATCTCGGCTTAACTATCCAAGCTCAAA 1432
Query 1415 AACAAGAGGAGTTACCAGAAAAGGTCCTATGTTGTCTAAGATTGAGCAAGATTGACTTTG 1474
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1433 AACAAGAGGAGTTACCAGAAAAGGTCTTATGTTGTCTAAGATTAAGCAAGATTGACTTTG 1492
Query 1475 TTGACAACGGTCAAATTCCTACACTTTTAATTCCTGAAGAAGGAGAATC 1523
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1493 TTGACAACGGTCAAATTCCGACACTTTTAATTCCTGAAGAAGGAGAATC 1541
> Ahg896869 jgi|Araly1|896869|Al_scaffold_0005_835
Length=1542
Score = 1013 bits (548), Expect = 0.0
Identities = 1250/1577 (79%), Gaps = 95/1577 (6%)
Strand=Plus/Plus
Query 1 ATGGGTACATGTATGTCAACACATTCAAGA-AGACTTAGGCCACGAAGGAAAGGCCGTCG 59
|||||| |||| ||||||| ||||||||| || ||||||| || ||||||||||||||
Sbjct 1 ATGGGTGGATGTGTGTCAACCCATTCAAGAGCGA-TTAGGCCTCGGAGGAAAGGCCGTCG 59
Query 60 CAGATTTTCTAAAAACATATCTAAAGTGTC------TG------------ATATTAG-AC 100
|||| ||||||| || | ||||||||||| || ||||||| |
Sbjct 60 TAGATCTTCTAAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATTCAAATATTAGAAG 119
Query 101 GCCTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCATGGTTTG 160
|||| ||||| ||||| | || ||||||| ||| || ||| | |||||||||||||
Sbjct 120 GCCT-AGTGACGTTGGGAGCCGCGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTTTG 178
Query 161 ATTCT-TCAAGTCTT-TT--CTCTGACT-CTGATGACGACTTTATTAGCCTACATGAAGC 215
| ||| | ||| || || || || | ||||| ||||| || ||| ||| ||||||
Sbjct 179 ACTCTGT-TAGTGTTCTTGATTCGGA-TGAGGATGAGGACTTCATCAGCTTACCTGAAGC 236
Query 216 TGATAATGT----T-TG-G---TTAGAGGGTGGCGTAATGGGTAAAATTCCAAATGGTCA 266
|| || || | | | | || |||||| | | | |||| || |||||||||||
Sbjct 237 AGAAAACGTACCATCAGCGCCATCAGCGGGTGGTGCGACGAGTAATATACCAAATGGTCA 296
Query 267 AGTGGTTGAGTTTGAGGCTTCTTCATGCATTGTTGAT-GGAAATGGAAATTACGAAGAAT 325
||| ||| | ||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||
Sbjct 297 AGTAGTTCAATTTGAATCTTCTTCGTGCATTGTGGATGGGAAA-GGAAAGTACGAAGAAT 355
Query 326 ACCATGAGAGTTACTTGAAGATTGATGGCGGTAATAAAATCGAGAAGTTTATGAGC-AAC 384
|||| |||| |||||||||||| ||| | || | ||||| |||||||||| ||| | ||
Sbjct 356 ACCACGAGACTTACTTGAAGATAGAT-G-GG-AGTAAAACCGAGAAGTTTGTGA-CGAAA 411
Query 385 GGTTTATATAAAGATACTAATGGTTTGTCTGGTATTATTGGAAACAACAAGAAGAAACTA 444
|| | || || ||| | | |||| | |||| | ||| |||||||||||||||||||||
Sbjct 412 GGGATGTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGAAACT- 470
Query 445 AATACTTATA-G-TAGCTTTAAAGGATTGAAAGAGTTAG-ACCCTAACCCTAAAGA-AAA 500
||| | | | ||||||||||| ||||| || || | | ||| || |||| |||
Sbjct 471 AAT-GGAACATGCAAGCTTTAAAGGCTTGAAGGA-ACAGAAACGGAACTCTCAAGAGAAA 528
Query 501 AGCATTAAAATCCAATTTGAGCCGGTTGATGCCATTGCCAACGGTTAGTTTCAACGACAA 560
| | | | || ||| | |||| | | | || | ||||||| ||||||||||| |||||
Sbjct 529 ACCCTGAGAA-CCAGTCTGAGTC-GAT--TG--A-TGCCAACAGTTAGTTTCAATGACAA 581
Query 561 AACTCTGAACTCCCCCACATCTCA-AAACCGGAAGTCAGCGGTTTATCAGG-TTTCTTTC 618
||||| ||||| ||||||||||| ||| || || || || ||||||| || |||| |||
Sbjct 582 GACTCTAAACTCACCCACATCTCAGAAA-CGAAAATCCGCTGTTTATC-GGCTTTCCTTC 639
Query 619 AAGAGAAGATCATGTGATGGTGAAGAAGTTACCGAACATAGGTCGTCGAAAAGATTGTTG 678
||||| || || || |||||||| |||||||| || || | ||| ||| ||||||
Sbjct 640 AAGAGGAGGTCGTGCGATGGTGAGGAAGTTACTGAGCA-A---CGT----AAG-TTGTTG 690
Query 679 TACCGTCCCAAAGCCGGATACACGATTCCGTGCTATGTCAAAGAGAAGCA-TCAATCATC 737
|||||||| ||||| |||| ||| ||||| | || | || ||| ||||| || || |
Sbjct 691 TACCGTCCAAAAGCGGGATTCACAATTCCTTCCTCGGGCAGAGAAAAGCAGTC---CAGC 747
Query 738 AGGAAGTTGGTGTGAGATACCTCCATCAAAC-TTGAAGTTACGTGGCGAAACTTATTTCA 796
||||||||||| |||||||| || || ||| || || | ||||| ||||| |||||||
Sbjct 748 -GGAAGTTGGTGCGAGATACCACCTTC-AACTTTTAAACTCCGTGGAGAAACATATTTCA 805
Query 797 AAGA-TAAACGAAAACACCCGGCTCCAAACCAATGTCCATACACTCCAATTGGTGTTGAC 855
|||| ||| |||| | ||| |||||||| || |||||||||||||| ||||| ||||||
Sbjct 806 AAGACAAAAAGAAATC-CCCAGCTCCAAATCAGTGTCCATACACTCCTATTGGCGTTGAC 864
Query 856 TTGTTTGTGTGTCCAAGGAAGATTGATCATATAGCCCAACACATTGAGCTTCCCAACATC 915
||||||| ||||||||||| ||||||||||| ||||||||||| |||||||| || |||
Sbjct 865 TTGTTTGCCTGTCCAAGGAAAATTGATCATATCGCCCAACACATCGAGCTTCCAAATATC 924
Query 916 AAAGCTGTGGCAAACCTCCCTGCTCTTCTAATTGTCAACATCCAGTTGCCAACTTATCCA 975
||||| | |||||| |||||||||||||| |||||||||| ||||| ||||| |||||
Sbjct 925 AAAGCCGAGGCAAAGCTCCCTGCTCTTCTTGTTGTCAACATTCAGTTACCAACCTATCCT 984
Query 976 GCCGCAATGTTTCTCGGTGATAGTAACGGAGAAGGCATGAGCATTGTACTTTACTTTAAA 1035
|| |||||||| || || ||| || | |||||||||||||||||||||||||||||||||
Sbjct 985 GCTGCAATGTTCCTTGGCGATGGTGATGGAGAAGGCATGAGCATTGTACTTTACTTTAAA 1044
Query 1036 CTACGAGAAAATTTC-AAAAATGAAATCTCTCAACAATACCAAGACAGCATCAAGAAACT 1094
|| |||| |||| | ||||| |||| |||||| || || || |||||||||||||||||
Sbjct 1045 TTAAGAGACAATTACGAAAAA-GAAACCTCTCAGCAGTATCAGGACAGCATCAAGAAACT 1103
Query 1095 AGTGGAA-GATGAGATGGAAAAAGTTAAAGGGTTTGCAAAAGACAACATCGTTCCGTTTC 1153
|| || ||||||||||| || || ||||||||||| ||||||| || |||| | ||||
Sbjct 1104 TGTC-AATGATGAGATGGAGAAGGTAAAAGGGTTTGCTAAAGACAGCAACGTTGC-TTTC 1161
Query 1154 -GTGAAAGGCTTAAAATAGTAGCCGGA-TTAGTTAACCCAGATGAACTCAGTCTGA-GTT 1210
||||||||||||| |||||||| ||| || |||||||| || || || || || | | |
Sbjct 1162 CGTGAAAGGCTTAAGATAGTAGCTGGACTT-GTTAACCCCGAAGATCT-AGCCTTAAGCT 1219
Query 1211 CTACTGAAAAGAAGCTTATACAAGCTTACAATGAAAAACCCGTGCTTTCTCGCCCTCAAC 1270
||||||||||||||||| |||| |||||||||||||||||||| || ||||| |||||||
Sbjct 1220 CTACTGAAAAGAAGCTTGTACAGGCTTACAATGAAAAACCCGTCCTCTCTCGTCCTCAAC 1279
Query 1271 ACAACTTCTTCAAGGGTCCTAACTACTTTGAGATTGATTTGGACGTGCATCGGTTTAGCT 1330
|||||||||| |||||||| ||||||||||||||||||||||| || ||||| || ||||
Sbjct 1280 ACAACTTCTTTAAGGGTCCAAACTACTTTGAGATTGATTTGGATGTACATCGATTCAGCT 1339
Query 1331 ACCTTTCAAGAAAAGGGCTTGAAGCATTCAGAGATCGACTCAAAAATGGAACTCTTGATC 1390
|| | ||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1340 ACATATCACGAAAAGGACTTGAAGCATTCAGAGATCGACTGAAAAACGGAACTCTTGATC 1399
Query 1391 TCGGCTTAACTATCCAAGCTCAAAAACAAGAGGAGTTACCAGAA-AAGGTCCTATGTTGT 1449
|||||||||||||||| |||||||||| ||| ||| | || ||| ||| |||||||||||
Sbjct 1400 TCGGCTTAACTATCCAGGCTCAAAAACCAGAAGAGCTGCCGGAACAAG-TCCTATGTTGT 1458
Query 1450 CTAAGATTGAGCAAGATTGACTTTGTTGACAACGGTCAAATTCCTACACTTTTAATTCCT 1509
||||| |||||||||||||||| |||||| |||||||||| || | ||||| || ||
Sbjct 1459 CTAAGGCTGAGCAAGATTGACTTCGTTGACCACGGTCAAATCCCGAGGCTTTTGATCCCG 1518
Query 1510 GAAGA--AGGAGAATCA 1524
|| || |||| |||||
Sbjct 1519 GAGGATGAGGAAAATCA 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5