BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39440.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330549 jgi|Araly1|330549|fgenesh1_pm.C_scaffold_7002776 2119 0.0
Ahg947871 jgi|Araly1|947871|scaffold_704100.1 1005 0.0
> Ahg330549 jgi|Araly1|330549|fgenesh1_pm.C_scaffold_7002776
Length=1476
Score = 2119 bits (1147), Expect = 0.0
Identities = 1384/1495 (93%), Gaps = 29/1495 (2%)
Strand=Plus/Plus
Query 1 ATGGATGGATCATCGGAAAAAACTACCAATA-AATTAGTATCGATTCTACCAAATTATAG 59
||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||
Sbjct 1 ATGGATGGATCATCGGAAAAAACTACCAATAGAA-TGGTATCAATTCTACCAAATTATAA 59
Query 60 GATTGGTAAGACTCTTGGACATGGATCCTTTGCGAAAGTGAAATTAGCACTGCATGTAGC 119
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATTGGTAAAACTCTTGGGCATGGATCCTTTGCGAAAGTGAAATTAGCACTGCATGTAGC 119
Query 120 TACTGGTCACAAAGTTGCTATCAAAATTCTTAATCGCT-CTAAGATTAAGAACATGGGTA 178
|||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 120 TACTGGGCACAAAGTTGCTATCAAAATCCTTAATCG-TGCTAAGATTAAGAACATGGGTA 178
Query 179 TTGAGATCAAAGTACAAAGGGAGATCAAAATTCTCAGATTTTTGATGCATCCTCATATCA 238
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 179 TTGAGATCAAAGTACAAAGGGAGATCAAAATTCTAAGGTTGTTGATGCATCCTCATATCA 238
Query 239 TCCGTCAATATGAAGTTATAGAGACGCCAAATGACATTTATGTTGTGATGGAATATGTTA 298
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 239 TCCGTCAATACGAAGTTATAGAGACGCCTGATAACATTTATGTTGTGATGGAATATGTTA 298
Query 299 AGTCTGGAGAACTATTTGACTATATTGTAGAGAAAGGTAAATTACAGGAAGACGAGGCTC 358
||||||||||| |||||||||||||| |||| ||||||| ||| || |||||||||||||
Sbjct 299 AGTCTGGAGAATTATTTGACTATATTATAGAAAAAGGTAGATTGCAAGAAGACGAGGCTC 358
Query 359 GTCATCTTTTTCAGCAGATCATATCTGGTGTAGAGTATTGTCATCGCAATATGATCGTTC 418
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 GTCATCTATTTCAGCAGATCATATCTGGTGTGGAGTATTGTCATCGCAATATGATCGTTC 418
Query 419 ATAGAGATCTTAAGCCCGAGAATGTGCTTTTGGATTCGCAATGCAACATAAAGATTGTTG 478
|||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||
Sbjct 419 ATAGAGATCTTAAGCCTGAGAATATGCTTTTGGATTCGAAATGTAACATAAAGATTGTTG 478
Query 479 ACTTTGGATTGAGTAATGTCATGCATGATGGTCATTTTTTAAAGACTAGTTGTGGAAGCC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACTTTGGATTGAGTAATGTCATGCATGATGGTCATTTTTTAAAGACTAGTTGTGGAAGCC 538
Query 539 CTAATTATGCTGCTCCAGAGGTTATTTCAGGAAAACCATAT---GGACCAGATGTAGATA 595
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 539 CTAATTATGCTGCTCCAGAGGTTATTTCAGGAAAACCATATTCTGGACCAGAAGTAGATA 598
Query 596 TATGGAGTTGTGGGGTGATATTATATGCTCTGTTGTGTGGTACTCTTCCTTTCGATGACG 655
|||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 599 TATGGAGTTGTGGGGTTATATTATATGCTCTATTGTGCGGTACTCTTCCCTTCGACGACG 658
Query 656 AAAATATTCCTAATGTATTCGAGAAAATAAAGAGAGGAATGTATACTCTTCCAAATCATT 715
|||||||||||| | ||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 659 AAAATATTCCTACTCTATTCGATAAAATAAAGAAAGGAATGTATACTCTTCCAGATCATT 718
Query 716 TATCACATTTTGCTAGAGATTTGATACCGAGAATGCTTATGGTTGATCCTACT-ATGAGA 774
||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 719 TATCATATGTTGCTAGAGATTTGATACCGAGAATGCTTATGGTTGATCCT-CTGATGAGA 777
Query 775 ATTAGCATTACTGAGATTCGTCAACATCCTTGGTTCAATAATCATCTTCCTCTTTATCTT 834
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 778 ATTAGCATTACTGAGATTCGTCAACATCATTGGTTCAATAATCATGTTCCTCTTTATCTT 837
Query 835 TCTATTCCTCCATTAGATACCATAGACCAAGCTAAAAAGATTGAGGAGGAGATAATTCAA 894
| ||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 838 TATATGCCTCCATTAGATACAATAGAAGAAGCTAAAAAGATTGATGAGGAGATAATTCAA 897
Query 895 AACGTGGTTAACATAGGGTTTGATAGAAACCATGTTGTTGATTCTCTTGCCAATAGAATC 954
|| || ||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 898 AAAGTAGTTAACATAGGATTTGATAGAAACCAAGTTGTTGAATCTCTTGTCAATAGAATC 957
Query 955 CAAAACGAGGCTACAGTTGCATACCATCTAATCCTAGACAACCGAAACCAAAATTCTGTT 1014
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 958 CAAAACGAGGCTACAATTGCATACCATCTAATACTAGATAACCGAAACCAAAATTTTGTT 1017
Query 1015 CCCAATGACCCTTTCCAATCCAAGTTTAAAGAGATTTCGGATGGTATATTTAATTCGACG 1074
|| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 1018 CCTAATGACCCTTTCCAATCCAACTTTAAAGAGATATCGGGTGGTATATTTAATTCGACG 1077
Query 1075 TTACCAG-T-T-CAAAATATTACTTCACATGTTGGCCATTCATTTTCGGCATTGTATGGA 1131
|| |||| | | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 TTTCCAGCTGTTCAAAATATTACTTCACATGTTGGCCATTCATTCTCGGCATTGTATGGA 1137
Query 1132 CTAAAATC-CAATGTCAAAGATGACAAAACATGGACCCTTGGACTTCAGTCTCAAGGGAG 1190
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1138 CTAAAATCACA-TGTCAAAGATGACAAAACATGGACCCTTGGCCTTCAGTCTCAAGGGAG 1196
Query 1191 TCCTTATGATATCATGACTGAAATTTTTAAAGCTCTTCAAAATCTAAAAATATGCTGGaa 1250
|||| ||||||| |||| |||||||||||| |||||||||||||||||| | ||||||||
Sbjct 1197 TCCTCATGATATAATGAATGAAATTTTTAAGGCTCTTCAAAATCTAAAAGTGTGCTGGAA 1256
Query 1251 aaaaaTCGGACTCTACAATATAAAATGTAGATGGGTCCGAAGCTTTGCTTACTATAAGAA 1310
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||
Sbjct 1257 AAAAATCGGACTCTACAATATAAAATGTAGAAGGGTCCGAAGCCTTGCTAACTACAAGAA 1316
Query 1311 TCATACAATTGAGGATGAATGTGCCATCATCTTACCGACCGTCATCAAATTTGAAATTCA 1370
|||||||||||||| ||||||| || | | |||||||||||||| ||||
Sbjct 1317 TCATACAATTGAGGGTGAATGT---AT--T---A-------TCATCAAATTTGAACTTCA 1361
Query 1371 GCTATACAAAGTACGCGAAGGCAAATATTTGCTGGACATCCTAAGAATTGATGGACCTCA 1430
||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1362 GCTATACAAAGTACGTGAAGGCAAGTATTTGTTGGACATCCAAAGAATTGATGGACCTCA 1421
Query 1431 GTTTATCTTCTTTGATCTATGTGTTGCGTTTCTCAGAGAGCTAGGTGTCCTCTAA 1485
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1422 GTTTATCTTCTTTGATATATGTGTTGCGTTTCTCAGAGAGCTAGGGGTCCTCTAA 1476
> Ahg947871 jgi|Araly1|947871|scaffold_704100.1
Length=1496
Score = 1005 bits (544), Expect = 0.0
Identities = 780/890 (88%), Gaps = 31/890 (3%)
Strand=Plus/Plus
Query 1 ATGGATGGATCATCGGA-AAAAACTACCAATA-AATTAG-TATCGA-TTCTACCAAATTA 56
||||| |||||||| || ||| ||||| | || || || ||| | |||||||||| ||
Sbjct 21 ATGGAGGGATCATC-GAGAAAGACTACTAGTAGAA--AGAAATC-AGTTCTACCAAACTA 76
Query 57 TAGGATTGGTAAGACTCTTGGACATGGATCCTTTGCGAAAGTGAAATTAGCACTGCATGT 116
|| ||||||||| || ||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 77 TATGATTGGTAAAACACTTGGGCATGGATCATTTGCAAAAGTGAAATTAGCGGTGCATGT 136
Query 117 AGCTACTGGTCACAAAGTTGCTATCAAAATTC-TTAATCGCTC-TAAGATTAAGAACATG 174
||||||||| ||||| ||||||||||||| || || |||| || |||||||||||| |||
Sbjct 137 AGCTACTGGGCACAACGTTGCTATCAAAA-TCTTTGATCG-TCTTAAGATTAAGAAAATG 194
Query 175 G--GTATTGAGATCAAAGTACAAAGGGAGATCAAAATTCTCAGATTTTTGATGCATCCTC 232
| ||| || |||||||| |||||||||||||||||||| ||| | |||||||||||||
Sbjct 195 GACGTA--GACATCAAAGTGCAAAGGGAGATCAAAATTCTTAGACTGTTGATGCATCCTC 252
Query 233 ATATCATCCGTCAATATGAAGTTATAGAGACGCCAAATGACATTTATGTTGTGATGGAAT 292
||||||||||||| || |||| |||||||||||| || |||||||||||||||||||||
Sbjct 253 ATATCATCCGTCAGTACGAAGGTATAGAGACGCCTGATAACATTTATGTTGTGATGGAAT 312
Query 293 ATGTTAAGTCTGGAGAACTATTTGACTATATTGTAGAGAAA-GGTAAATTACAGGAAGAC 351
||||||||||| ||||| ||||||||||||||||| ||||| |||| |||||| ||||||
Sbjct 313 ATGTTAAGTCTAGAGAATTATTTGACTATATTGTA-AGAAACGGTAGATTACAAGAAGAC 371
Query 352 GAGGCTCGTCATCTTTTTCAGCAGATCATATCTGGTGTAGAGTATTGTCATCGCAATATG 411
||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||| |
Sbjct 372 AAGGCTCGTCATCTTTTTCAACAGCTCATATCTGGTGTGGAGTATTGTCATCACAATA-G 430
Query 412 -ATCGTTCATAGAGATCTTAAGCCCGAGAATGTGCTTTTGGATTCGCAATGCAACATAAA 470
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 431 AATCGTTCATAGAGATCTTAAGCCAGAGAATGTACTTTTGGATTCAAAATGCAACATAAA 490
Query 471 GATTGTTGACTTTGGATTGAGTAATGTCATGCATGATGGTCA-TTTTTTAAAGACTAGTT 529
|||||||||||||||||| ||||||||||||| |||||||| || |||||| || ||||
Sbjct 491 AATTGTTGACTTTGGATTGGGTAATGTCATGCAAGATGGTCACTTCTTTAAA-ACAAGTT 549
Query 530 GTGGAAGCCCTAATTATGCTGCTCCAGAGGTTATTTCAGGAAAACCAT-AT---GGACCA 585
||||||||||||||||||||||||| |||||| |||||||||||| || || ||||||
Sbjct 550 GTGGAAGCCCTAATTATGCTGCTCCCGAGGTTGTTTCAGGAAAAC-ATTATTCTGGACCA 608
Query 586 GATGTAGATATATGGAGTTGTGGGGTGATATTATATGCTCTGTTGTGTGGTACTCTTCCT 645
|| ||||||||||||||||| || |||||||| |||||||| || |||||||||||||||
Sbjct 609 GAAGTAGATATATGGAGTTGCGGAGTGATATTGTATGCTCTCTTATGTGGTACTCTTCCT 668
Query 646 TTC-GATGACGAAAATATTCCTAATGTATTCGAGAAAATAAAGAGAGGAATGTATACTCT 704
||| | ||||||||||| |||| | ||||||| ||||||||||||||||| |||| |||
Sbjct 669 TTCAGC-GACGAAAATATACCTAGTCTATTCGATAAAATAAAGAGAGGAATATATATTCT 727
Query 705 TCCAAATCATTTATCACATTTTGCTAGAGATTTGATACCGAGAATGCTTATGGTTGATCC 764
|||| |||||||||||| | ||||||||||||||||||| || || || ||||| |||||
Sbjct 728 TCCAGATCATTTATCACCTCTTGCTAGAGATTTGATACCAAGGATACTAATGGTGGATCC 787
Query 765 TACTA-TGAGAATTAGCATTACTGAGATTCGTCAACATCCTTGGTTCAATAATCATCTTC 823
| ||| |||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||
Sbjct 788 T-CTAATGAGAATTAGCATTGCTGAGATTCGTCATCATCTTTGGTTCAATAATGATCTTC 846
Query 824 CTCTTTATCTTTCTATTCCTCCATTAGATACCATAGACCAAGCTAAAAAG 873
||| ||||||| |||||| |||||||||||| ||||| ||||||||||||
Sbjct 847 CTCCTTATCTTACTATTCATCCATTAGATACTATAGAACAAGCTAAAAAG 896
Score = 257 bits (139), Expect = 1e-67
Identities = 361/462 (78%), Gaps = 39/462 (8%)
Strand=Plus/Plus
Query 1054 GATGGTATATTTAATTCG--ACGTTACC-A--GTTCAAAATATTACTTCACATGTTGGCC 1108
|||||||||||||||||| || || || | | |||| | ||| ||||| ||||||| |
Sbjct 1023 GATGGTATATTTAATTCGATAC-TT-CCAATTGATCAAGAGATTGCTTCAAATGTTGGAC 1080
Query 1109 ATTCATTTTCGGCATTGTA-TGGACTAAAATC-CAATGTCAAAGATGACAAAACATGGAC 1166
|||| ||| | |||||| | |||||||| ||| |||| || ||||| | | || |||||
Sbjct 1081 ATTCGTTTCCTGCATTG-ACTGGACTAAGATCACAAT-TCCAAGATAATAGAAGTTGGAC 1138
Query 1167 CCTTGGACTTCAGTCTCAAGGGAGTCCTTATGATATCATGACTGAAATTTTTAAAGCTCT 1226
|||||||||||||||||||||||||||| ||| ||||||| ||| ||||||| |||||
Sbjct 1139 CCTTGGACTTCAGTCTCAAGGGAGTCCTCGTGAAATCATGAGTGAGGTTTTTAAGGCTCT 1198
Query 1227 TCAAAATCTAAAAATATGCTGGaaaaaaaTCGGACTCTACAATATAAAATGTAGATGGGT 1286
||||| ||||||||||||||||||||| || |||||||||||||||||||| | ||||||
Sbjct 1199 TCAAAGTCTAAAAATATGCTGGAAAAAGATTGGACTCTACAATATAAAATGCAAATGGGT 1258
Query 1287 CCGAAGCTTTGCTTACTATAAGAATCATACAATTGA--GGATGAATGTGC-CA----TCA 1339
||||||||||| |||| |||||||| | ||| | |||| ||||| | || | |
Sbjct 1259 TCGAAGCTTTGCAAACTACAAGAATCA-A-AATCAAAAGGAT-AATGTCCTCAAAGATGA 1315
Query 1340 -TCTTACC-GACCGTC-ATCAAA-TT-T--GAAATT-C-AGCTAT-A-CAAAGT--A-CG 1385
||| || || | || || || | | || | | || | | |||| | | |
Sbjct 1316 ATCTAACATGATTGAGGATGAATGTTCTATGGTCTTACCAACTGTCATCAAATTTGAACT 1375
Query 1386 -CGAAGGCAAATATTTGCTGGACATCCTA-AGAATTGATGGACCTCAGTTTATCTTCTTT 1443
| | ||||| || ||||||||||||| | ||| ||||||||| |||||||||||||||
Sbjct 1376 TC-AGGGCAAGTACTTGCTGGACATCC-AGAGAGTTGATGGACATCAGTTTATCTTCTTA 1433
Query 1444 GATCTATGTGTTGCGTTTCTCAGAGAGCTAGGTGTCCTCTAA 1485
|||||||||| || ||||||| |||||||||||| ||||||
Sbjct 1434 GATCTATGTGCTGATTTTCTCACAGAGCTAGGTGTGCTCTAA 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5