BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39450.1
Length=2137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494041 jgi|Araly1|494041|fgenesh2_kg.7__3474__AT5G39450.1 2848 0.0
Ahg947867 jgi|Araly1|947867|scaffold_704096.1 791 0.0
Ahg947866 jgi|Araly1|947866|scaffold_704095.1 686 0.0
> Ahg494041 jgi|Araly1|494041|fgenesh2_kg.7__3474__AT5G39450.1
Length=1969
Score = 2848 bits (1542), Expect = 0.0
Identities = 1851/1997 (93%), Gaps = 33/1997 (2%)
Strand=Plus/Plus
Query 143 TCTCTCTCGCATCGTCTTCTTAGTTAGCGATTTCCTCATTTTTCTTATACAATCTGATTC 202
|||||||| |||||||||||||||||| |||||||||||||||||| ||||| | ||||
Sbjct 1 TCTCTCTCACATCGTCTTCTTAGTTAGTGATTTCCTCATTTTTCTTCCACAATTTAATTC 60
Query 203 GGATCGAGTTCTTCTTTGATGGGTAATTGAAAAGTTTGAATCTTGTTTACGTAAAAAGCG 262
|||||||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 61 GGATCGAGTTCTACTTTGATGGGTAATTGAAAAGTTTGATTCTTGTTCACGT-TAAAGCG 119
Query 263 ATCTGATTCAAACCAAAACTGATATTTTTGACGAATCCCAAAGCTGCGTTTTTTGATCTT 322
|||||||||||| | | | |||||||||||| |||||||||||
Sbjct 120 ATCTGATTCAAA-C----C------------C----CCCAAAGCTGCG-TTTTTGATCTT 157
Query 323 CAAAGTATGAATCAGATGA-G--GAACGGCGATTTAGGGTCAGAATCATTTGGTACTTGC 379
|| |||||||||||||||| | ||||| ||||||||| || |||||||||||| |||||
Sbjct 158 CATAGTATGAATCAGATGAGGAAGAACGACGATTTAGGTTCGGAATCATTTGGTGCTTGC 217
Query 380 TTGCTTCTGTCTCTTCCAGAAGATGTTATTGCTGTTATAGCACGTTTTGTATCTCCAAGA 439
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 218 TTGCTTCTGTCTCTTCCAGAAGATGTAATTGCTGTTATAGCTCGTTTTGTATCTCCAAGA 277
Query 440 GACATTTGCAATCTGAGCTTATGCTGCAAAAGTCTATGTGACGTTGTGGATTCAGAAAGG 499
|||||||||||||| |||||||||||||||||||| ||||| ||| | ||||||||||||
Sbjct 278 GACATTTGCAATCTAAGCTTATGCTGCAAAAGTCTCTGTGAGGTTTTTGATTCAGAAAGG 337
Query 500 ATCTGGCTTGTGCAGTGTGAAGTAGTAAAGGTTCTTCCTTTATCTGAAATAATCCAATGG 559
|||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 338 ATCTGGCTTGTGCAATGTGAAGTAGTAAAGGTTCTTTCTTTATCTGAAATGATCCAATGG 397
Query 560 CGAATTGGGATTTCTTCTTATAAGGCGCTTTGTTGGTTTCTTGGAGAGGTAATGAAGCCT 619
||||| || || ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 398 CGAATCGGAATCTCTTCTTATAAGGCGTTTTGTCGGTTTCTTGGAGAGGTAATGAAGCCT 457
Query 620 CTTGTTGGTGTTTGGGTTCATCAAAACCCTGAACTTGGGAATGTTGTTTATGTCATGCCT 679
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 458 CTTGTTGGGGTTTGGGTTCACCAAAACCCTGAACTTGGGAATGTTGTTTATGTAATGCCT 517
Query 680 GGTTTCTTGTCTGTTGTTGGGTGTCGGATAATTCCACAAGAGGTTGGTCCTTTGGGGATT 739
||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 518 GGTTTTTTATCCGTTGTTGGGTGTCGGATAATTCCACAAGAGGTTGGTCCTTTAGGGATT 577
Query 740 GAGGAGGCTCGAGTTATGTGGTCACCTGTGTTTGAGATTATCTGTGGTTTTGATGGCTCC 799
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 578 GAGGAGGCTCGAGTTATGTGGTCACCTGTGTTTGAGATAATCTGCGGTTTTGATGGCTCT 637
Query 800 GCCAAGTTTTTCCTCCATGGGAGAGATGGAAAAGTGCAATGCTGTCTGCACCCTGGTTTC 859
|||||||||||||||||||| ||||| |||||| |||| ||||| ||||| ||||||||
Sbjct 638 GCCAAGTTTTTCCTCCATGGAAGAGACGGAAAACTGCATTGCTGCCTGCATCCTGGTTTT 697
Query 860 GTTAGGGGCATTGAGAAGAGTTGTAATGTGCTTCTACTTGAGGTTGAGACGAGGCGAGAG 919
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 698 GTTATGGGCATTGAGAAGAGTTGTAATGTGCTTTTACTCGAGGTTGAGACGAGGCGAGAG 757
Query 920 AAGAAGTTGTGCAATGAGATTGATGAGACTGTGTTGTTGGTAGAGACGGGGGTTCAGTTA 979
||| ||||||||| ||||| | ||||||||||||||||| |||||| ||||||||||||
Sbjct 758 AAGGAGTTGTGCAGTGAGA-T--TGAGACTGTGTTGTTGGGAGAGACAGGGGTTCAGTTA 814
Query 980 CCATTTCGCAAACTACCATTTAGTTATAGAAGGAATTTACTTCACATAGTGACAAGCACT 1039
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCATTTCGCAAACTACCCTTTAGTTATAGAAGGAATTTACTTCACATAGTGACAAGCACT 874
Query 1040 GTTGGTATACCTGTACCTGATCTATCAAGTGAAAAGTTATTTCCTACGTCAAAAGATGAT 1099
|||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||
Sbjct 875 GTTGGTATACCTGTACCTGATCTATCAAGTGAAAGGTTATTTCCCACTTCGAAAGATGAT 934
Query 1100 GAAGCGGTGTTGT-TGGAACGCAGAACCATGCTTCTTAAAATGCACAAGTTTGGTGGTGA 1158
||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 935 GAAGCGGTGTTGTCT-GAACGCAGAACCATGCTCCTTAAAATGCATAAGTTTGGTGTTGA 993
Query 1159 TTGGAATCACATGAACCTGGAGGATGAGTGCACAAATATTCCAAATCAGGTAGACATAAA 1218
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 994 TTGGAATCACATGAACCTGGAGGATGAGTGTATAAATATTCCAAATCAGGTAGACATAAA 1053
Query 1219 CAAATCGTGGAAGCATCTAGGTTTTGAAGGCGATATTCGCAACATGGACGCTGAGAATCA 1278
| |||||||||||||||| || ||||||| ||||| ||| ||||||||||||| ||||||
Sbjct 1054 CGAATCGTGGAAGCATCTTGGATTTGAAGTCGATAATCGGAACATGGACGCTGGGAATCA 1113
Query 1279 GACACAAAGGAAGAGCTTTAGTAGGTATTTCAGAAGTGGCATAAAGCATATTCTCGGGAG 1338
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1114 GACACAAAGGAAGAGCTTTAGTAGGTATTTCAGAAGTGGCATAAAGCATATTCTTGGGAG 1173
Query 1339 GTCTAGTTCTTCAAAGAACATGTCTTCTTCAAGAAGTGAGACTAGACCTTTGAATCTCCA 1398
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1174 GTCTAGTTCTTTAAAGAACACGTCTTCTTCAAGAAGTGAGACTAGACCTTGGAATCTCCA 1233
Query 1399 AAAGTTTCTTAATTTTGGTGATTCAATAGGTCTTAGTCTCAAAGCTTCCAATATTAAGTT 1458
||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 1234 AAAATTTCTTAATTTTGGTGATTCCATAGGTCTTAGTCTCAAAGCTTCCAAGATTAAGCT 1293
Query 1459 GTCTTCTTACCAAGGTTGGCCAAACATGGACGAAACCCGTTATGCCCTTTATAAGCTACC 1518
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GTCTTCTTATCAAGGTTGGCCAAACATGGACGAAACCCGTTATGCCCTTTATAAGCTACC 1353
Query 1519 GATTAAGGATCCCATCGCTAACGATGAGTATGCCGGGTTATGGGGAGGAACTTTTGGCTG 1578
||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1354 GATTAAGAATCCCATCGCTAACGAAGAGTATGCCGGCTTGTGGGGAGGAACTTTTGGCTG 1413
Query 1579 GCCACCAGGAAAATGTACAGAAGATAAACCAGGGAAGGCt-ttttttCTACTGATGCTCT 1637
|||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 1414 GCCACCAGGAAAATGTACAGAAGATAAACCCGGGAAGGCTCTTTTTT-TACTGATGCTCT 1472
Query 1638 CTTATGAAGAATCTCAAGATGGTACTGAGAGACTTCTTATAGGGACAAAAATACTCGAAG 1697
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1473 CTTATGAAGAATCTCAAGATGGTACTGAAAGACTTCTTATAGGGACGAAAATACTCGAAG 1532
Query 1698 GAACTCACTACGGGATGCATCCTAATGGATCTGCAATGTTTGTTATAAAAATTGATTCGC 1757
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1533 GAACTCACTACGGGATGCATCCTAATGGATCTGCAATGTTTGTTATAAAGATTGATTCAC 1592
Query 1758 CATCCTTTGAGGGTTTTCCTTTCGACACAAATGGAGAAGATTTTGAGCATTCTTACGCAG 1817
| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1593 CTTCCTTTGAGCTTTTTCCTTTCGATACAAATGGAGAAGATTTTGAGCATTCTTACGCAG 1652
Query 1818 GAGAAGGTACTGCAAAGGGTTATGGTTTCCGGTATCCTGGTTACAAACCTGGTACACTTT 1877
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1653 GAGAAGGTACTGCAAAGGGTTATGGTTTCCGGTATCCTGGTTACAAACCGGGTACACTTT 1712
Query 1878 TCGTGACATCTAAAGGTCTTCTCATGTTCATTTGGAAAGCAACTAAAGCTGTGTTGACAT 1937
|||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1713 TCGTAACATCTAAAGGTCTTCTCATGTTTGTTTGGAAAGCAACTAAAGTTGTGTTGACAT 1772
Query 1938 TGCAAAGACTTAACCTTGGAGAGCTCTTAAGGAAAGGTGTATGTGTATCGCCTTTACCTC 1997
| ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1773 TACAAAGACTTGACCTTGGAGAGCTCTTAAGGAAAGGCGTGTGTGTATCGCCTTTACCTC 1832
Query 1998 CATGTTTGAATTTTGCTTATTTGATAAAATGTCACACCAATGTGTTTGCCCCTGAACGAA 2057
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1833 CATGTTTGAATTTTGCTTATTTGACAAAATCTCACACCAATGTGTTTGCCCCTGAACGAA 1892
Query 2058 GAAGATCATAGGAGATTGCTGCAACAAATTTGAAACTCACAAGTCTTCTCTATTTCCAAT 2117
||||||| ||||||||| |||||||| ||| ||| |||||||||| ||||| ||||||||
Sbjct 1893 GAAGATCGTAGGAGATTCCTGCAACAGATTCGAAGCTCACAAGTCCTCTCTGTTTCCAAT 1952
Query 2118 ATAATAGGCTCATTATC 2134
|||||| |||||||||
Sbjct 1953 ATAATAATCTCATTATC 1969
> Ahg947867 jgi|Araly1|947867|scaffold_704096.1
Length=1480
Score = 791 bits (428), Expect = 0.0
Identities = 1102/1411 (78%), Gaps = 112/1411 (8%)
Strand=Plus/Plus
Query 362 GAATCATTTGGTACTTGCTTGCTTCTGT-CTCTTCCAGAAGATGT-TATTGCTGTTATAG 419
||||| |||||| ||||||||||||| | | ||||| || |||| | ||||||||||
Sbjct 33 GAATCGTTTGGTGCTTGCTTGCTTCT-TACGCTTCCCCAATATGTGT-TTGCTGTTATCT 90
Query 420 CACGTTTTGTATCTCCAAGAGACATTTGCAATCTGAGCTTATGCTGCAAAAGTCTATGTG 479
|||||||| | |||||||| |||||||||||||||| ||| ||| | |||||| | ||||
Sbjct 91 CACGTTTTCTTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAAAGTATTTGTG 150
Query 480 ACGTTGTGGATTCAGA-AAGGATC-TGGCTTGTGCAGTGTGAAGTAGTAAAGGTTCTTCC 537
| |||| |||| || || || | ||||||||||| |||||||| ||||||||| ||||
Sbjct 151 CCCTTGTCCATTCCGACAA-GA-CATGGCTTGTGCAATGTGAAGTCGTAAAGGTTATTCC 208
Query 538 TTTATCTGAAATAATCCAATGGCGAATTGGGATTTCTTCTTATAAGGCGCTTTGTTGGTT 597
||| | ||||||| ||||||||||||| ||||| |||||||| |||||||||||| ||||
Sbjct 209 TTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTTTGTAGGTT 268
Query 598 TCTTGGAGAGGTAATGAAGCCTCTTGTTGGTG-TTTGGGTTCATCAA-AACCCTGAACTT 655
||||| |||||| ||||||| |||||||| | |||||||||| || |||||||||| |
Sbjct 269 TCTTGTAGAGGTGGTGAAGCCGCTTGTTGG-GATTTGGGTTCA-AAAGAACCCTGAACGT 326
Query 656 GGGAATGTTGTTTATGTCATGCCTGGTTTCTTGTCTGTTGTTGGGTGTCGGATAATTCCA 715
|||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 327 GGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATAATTCCT 386
Query 716 CAAGAGGTTGGTCCTTTGGGGATT-GAGGAGGCTCGAGTTATGTGGTCACCTGTGTTTGA 774
||||| |||||||||||| ||||| || ||| | | || |||||||||| ||||||||
Sbjct 387 CAAGAAGTTGGTCCTTTGTGGATTCAAGAAGG-ACAAATTGTGTGGTCACCAGTGTTTGA 445
Query 775 GATTATCTGTGGTTTTGATGGCTCCGCCAAG-TTTTTCCTCCATGGGAGAGATGGAA-AA 832
||| ||||| ||| |||||||||| | | |||||||||||||| ||||| ||| ||
Sbjct 446 GATAATCTGCGGTGTTGATGGCTCTAAC-GGTTTTTTCCTCCATGGAAGAGA-CGAAGAA 503
Query 833 GTGCAATGCTGTCTGCACCCTGGTTTCGTTAGGGGCATTGAGAAGAGTTGTAATGTGCTT 892
| || | | ||| || ||||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct 504 G-GC-A-GTTGTTTGTACCCTGGTTTCGTTATGGGCATCGAGAAGAGTTGCAATGAGCTT 560
Query 893 CTACTTGAGGTTGAGACGAGGCGAGAGAAGAAGTT-GTGC-AATGAGATTGA-TG---AG 946
||||| || |||||| |||||| ||||||| |||| || | ||||||||||| | ||
Sbjct 561 CTACTCGAAGTTGAGCCGAGGCAAGAGAAG-AGTTCGT-CTAATGAGATTGAGAGAAAAG 618
Query 947 ACT--------GTGTTGT--TGG--TAGAGACGGGGGTTCAGTTACCATTTCGCAAA-CT 993
||| | ||| | || | | | | ||| ||| |||||| | ||| ||
Sbjct 619 ACTCAAGAAAAGAGTTATCGGGGAAAATAAATGAGGGAGGGGTT-CCATTT-GGAAATCT 676
Query 994 A-CCATTTAGTTATAGAAGGAATTTACTTCACATAGTGAC-AAGCACTGTTGGTATACCT 1051
| | |||||| ||||||||| |||||| | |||||| | || || ||| || ||| |
Sbjct 677 AGGC-TTTAGTGATAGAAGGAGCTTACTTGATATAGTGGCAAACCA-TGTAAGTCTACGT 734
Query 1052 GTAC-CTGATCTATCAAGTGAAAAGTTATTTCCTA-C--GTC-AAA-A-GATGATGAAGC 1104
|| | ||| | || ||| | |||||||||||| | | ||| ||| | ||||| |||||
Sbjct 735 GT-CGGTGAACCATTAAGAGGAAAGTTATTTCCCACCAGGTCGAAAGATGATGACGAAGC 793
Query 1105 GGTGTTGTTGGAACGCAGAACCATGCTTCTTAAAATGCACAAGTTTGGTGGTGAT-TGGA 1163
||||||||||||||||||||||||||| |||||||||| ||| |||||||| || ||||
Sbjct 794 GGTGTTGTTGGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGG-GAACTGGA 852
Query 1164 ATCACATGAACCTGGAGGATGA-G-TGCA-CAA-AT-AT--TCCAAAT-CAGGTAGACAT 1215
| |||||||| ||||||| || | | || | | || || ||| | | |||||||||||
Sbjct 853 AGCACATGAATTTGGAGGAGGATGAT-CAGCTATATTATAATCCTA-TGCAGGTAGACAT 910
Query 1216 AAACAA-ATCGTGG-AAGCATCTAGGTTTTGAAGGCGATATTCGCAACATGGACGCT-GA 1272
||| | || ||| || |||| ||| | || | | | || |||||||| | ||
Sbjct 911 AAATGAGATA-TGGGAAA-ATCTCGGTGAT-AA--C-AC-TGA-CATCATGGACGATAGA 962
Query 1273 GA--ATCAGA------C-ACA--AAGGAAGA-G--CTTTAGTAGGTATTTCAGAAGTGGC 1318
|| |||||| | ||| |||||||| | |||||| | || ||||| |||||||
Sbjct 963 GAGTATCAGAGAGAGGCTACACCAAGGAAGAAGAGCTTTAGCATGTTTTTCATAAGTGGC 1022
Query 1319 ATAAAGCATATTCTCGGGAGGTCTAGTTCTTCAA-AGAACATGTCTT--C-TTCAAGAAG 1374
|| | ||||||||| |||| ||||||| || || |||||| | | | ||| || ||
Sbjct 1023 ATCATGCATATTCTTGGGAAGTCTAGTCCTG-AAGAGAACACGCCGCGGCCTTCGAGCAG 1081
Query 1375 TGAGACTAGACCTTTGAATCTCCAAAAGTTTCTTAATTTTGGTGATTCAATAGGTCTTAG 1434
||||| ||||| || ||||| ||||| ||||||| | ||||||| || | || |||||
Sbjct 1082 TGAGATTAGACGTTCGAATCGCCAAACCTTTCTTAGCTCTGGTGATACATTCGGCCTTAG 1141
Query 1435 TCTCAAAGCTTCCAATATTAAGTTGTCTTCTTACCAAGGTTGGCCAAACATGGACGAAAC 1494
||||||||||||| | | | || |||||||||||||||| ||||||| |||| | |||
Sbjct 1142 TCTCAAAGCTTCCTACACTGAGATGTCTTCTTACCAAGGGTGGCCAATCATGTCCCAAAA 1201
Query 1495 CCG-TTATGCCCTTTATAAGCTACCGATTAAGGATCCCATCGCTAA-CGATGAGTATGCC 1552
||| || | ||||| |||| ||||| || ||| |||||||| ||| | | |||||||||
Sbjct 1202 CCGCTTTT-CCCTTCATAAACTACCAATGAAGAATCCCATCAATAATCAA-GAGTATGCC 1259
Query 1553 GGGTTATGGGGAGGAACTTTTGGCTGGCCACCAG-GAAAATGTAC-AGAAGATAAA-CCA 1609
|| || ||||||||||| |||||||||||||| | | || ||| | ||||||||| |||
Sbjct 1260 GGTTTGTGGGGAGGAACGTTTGGCTGGCCACCTGAGCAA-TGT-CGAGAAGATAAGTCCA 1317
Query 1610 GGGAAGGCtttttttCT-ACTGATGCTCTCTTATGAAGAATCTCAAGATGG-TACTGAGA 1667
| |||||| | || || |||||||||| ||||| |||||||| | || | || |||||
Sbjct 1318 GA-AAGGCTCTATT-CTTACTGATGCTCACTTATAAAGAATCTGAGGA-GAATAGTGAGA 1374
Query 1668 GACTTCTTATAGGGACAAAAATACTCGAAGG 1698
|| |||| || ||||| |||||||| |||||
Sbjct 1375 GAGTTCTCATTGGGACGAAAATACTTGAAGG 1405
> Ahg947866 jgi|Araly1|947866|scaffold_704095.1
Length=1769
Score = 686 bits (371), Expect = 0.0
Identities = 693/843 (82%), Gaps = 44/843 (5%)
Strand=Plus/Plus
Query 362 GAATCATTTGGTACTTGCTTGCTTCTGT-CTCTTCCAGAAGATGT-TATTGCTGTTATAG 419
|||||||||||| ||||||||||||| | | |||||||||||||| | || |||||||
Sbjct 33 GAATCATTTGGTGCTTGCTTGCTTCT-TACGCTTCCAGAAGATGTGT-TTACTGTTATCT 90
Query 420 CACGTTTTGTATCTCCAAGAGACATTTGCAATCTGAGCTTATGCTGCAAAAGTCTATGTG 479
| |||||| | || ||||| |||||||||||||| | ||| ||| |||||||||| ||||
Sbjct 91 CTCGTTTTCTTTCACCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAAAGTCTTTGTG 150
Query 480 ACGTTGTGGATTCAGA-AAGGATC-TGGCTTGTGCAGTGTGAAGTAGTAAAGGTTCTTCC 537
| |||| ||||| || || || | ||||||||||| ||||||| |||||||||||||||
Sbjct 151 CCCTTGTCGATTCCGAGAA-GA-CGTGGCTTGTGCAATGTGAAGAAGTAAAGGTTCTTCC 208
Query 538 TTTATCTGAAATAATCCAATGGCGAATTGGGATTTCTTCTTATAAGGCGCTTTGTTGGTT 597
||| | ||||||| |||||||||||| ||||| |||||||| ||||| |||||| ||||
Sbjct 209 TTTGTTTGAAATAGTCCAATGGCGAAGCGGGATCTCTTCTTACAAGGCACTTTGTAGGTT 268
Query 598 TCTTGGAGAGGTAATGAAGCCTCTTGTTGGTG-TTTGGGTTCATCAAAACCCTGAACTTG 656
||||| |||||| |||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 269 TCTTGTAGAGGTGGTGAAGCCTCTTGTTGG-GATTTGGGTTCAACAAAACCCTGAACTTG 327
Query 657 GGAATGTTGTTTATGTCATGCCTGGTTTCTTGTCTGTTGTTGGGTGTCGGATAATTCCAC 716
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 328 GGAATGTCGTTTATGTCATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAATTCCAC 387
Query 717 AAGAGGTTGGTCCTTTGGGGATTGAGGAGG-CTCGAGTTATGTGGTCACCTGTGTTTGAG 775
|| |||||||||||||| ||||| | |||| | ||||||| |||||||||||||||||||
Sbjct 388 AAAAGGTTGGTCCTTTGTGGATTCAAGAGGGC-CGAGTTAAGTGGTCACCTGTGTTTGAG 446
Query 776 ATTATCTGTGGTTTTGATGGCTCCGCCAAGTTTTTCCTCCATGGGAGAGATGGAA-AAGT 834
|| ||||| |||||||||||||| || ||||||||| ||||| ||||| || |||
Sbjct 447 ATAATCTGCGGTTTTGATGGCTCTACCGGGTTTTTCCTTCATGGAAGAGACA-AAGAAG- 504
Query 835 GCAAT-GCTGTCTGCACCCTGGTTTCGTTAGGGGCATTGAGAAGAGTTGTAATGTGCTTC 893
||| | ||| | | |||||||||| |||| |||||||||||||||||| ||| ||||||
Sbjct 505 GCAGTTGCT-TGT--ACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATTTGCTTC 561
Query 894 TACTTGAGGTTGAGACGAGGCGAGAGAAGAAGTT-GTGCAATGAGATTGATGAGACTGTG 952
||| || ||||| ||||||||||||||| ||| ||||||||||||||| |||| | |
Sbjct 562 AACTCGAAATTGAGCCGAGGCGAGAGAAGA-GTTCGTGCAATGAGATTGA-GAGAG-GAG 618
Query 953 T-T---GTT-GGTAGAGACGG-GGGTTCAG-TTACCATTTCGCAAACTAC-CATTTAGTT 1004
| | || || | || ||| || || |||||| | | || | | |||||
Sbjct 619 CCTCAAGAAAGGGGGAAAAGGAGGGAG-AGGTT-CCATTTTGGATGCT-CGCTTTTAGCG 675
Query 1005 ATAGAAGGAATTTACTTCACATA--GTGACAAGC-ACTGTTGGTATACCTGTACCTG-AT 1060
|||||| || ||||| || ||| ||||||||| | ||| ||||||| ||| || |
Sbjct 676 ATAGAAAAAACTTACT-CA-ATATTGTGACAAGCCA-TGTAGGTATACATGTGG-TGGAG 731
Query 1061 CTATCAAGTGAAAAGTTATTTCCTACGTCAAAAGATGATGAAGCGGTGTTGTTGGAACGC 1120
| || || || || ||||||||| || ||||||||||||||||| ||||| | ||||||
Sbjct 732 CCATTAAATGGAAGGTTATTTCCCACATCAAAAGATGATGAAGCAATGTTGGTCGAACGC 791
Query 1121 AGAACCATGCTTCTT-AAAATGCACAAGTTTGGTGGTGATTGGAATCACATGAACCTGGA 1179
||||||||||| ||| |||||||||||||||||||| | ||||| ||||||| ||||
Sbjct 792 AGAACCATGCT-CTTTAAAATGCACAAGTTTGGTGGAAAGTGGAAGAACATGAATTTGGA 850
Query 1180 GGA 1182
|||
Sbjct 851 GGA 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80408507195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5