BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39460.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947869 jgi|Araly1|947869|scaffold_704098.1 1271 0.0
Ahg947866 jgi|Araly1|947866|scaffold_704095.1 994 0.0
Ahg947867 jgi|Araly1|947867|scaffold_704096.1 811 0.0
Ahg494041 jgi|Araly1|494041|fgenesh2_kg.7__3474__AT5G39450.1 776 0.0
> Ahg947869 jgi|Araly1|947869|scaffold_704098.1
Length=1646
Score = 1271 bits (688), Expect = 0.0
Identities = 896/996 (90%), Gaps = 15/996 (2%)
Strand=Plus/Plus
Query 600 AGGGGATCCATTTGGAGATCTAGACTTCAGTGATAGAATGAACTTACTAGATATAGTGAC 659
||||| |||||||||| |||||||||| ||||||||| | ||||| || |||||||||||
Sbjct 656 AGGGGTTCCATTTGGAAATCTAGACTTTAGTGATAGAGTAAACTTGCTTGATATAGTGAC 715
Query 660 AAAACATGTAAGTCTACGAGTCGATGAACCATTAACAGGAAAT-TTATTTCCCACCAGGT 718
||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 716 AAACCATGTAAGTCTACGAGTCGGTGAACCATTAACAGG-AATGTTATTTCCCACCAGGT 774
Query 719 CAAAATATGACGAAGCGATGATGTTGGAACGCAGAAACATGCTCCTTAAAATGCTCAAAT 778
| ||| |||| ||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 775 CCAAAGATGATGAAGCAATGATGTTTGAACGCAGAACCATGCTCCTTAAAATGCTCAAAT 834
Query 779 TTGGTGGAAACTGGAAGCACATAAACTTGGAGGAGGATGAGCAGTTGTGTTACAATCATA 838
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 835 TTGGTGGAAACTGGAAGCACCTGAACTTGGAGGAGAATGAGCAGTTGTGTTACAATCATA 894
Query 839 TAGAGATAGACATaaaaaaaTTGTTGGAAAATCTTGGTGATGACATTGACAACATGGAGG 898
|| ||||||||||||| ||| ||| ||||||||| ||||||||||||||| |||||||||
Sbjct 895 TACAGATAGACATAAACAAACTGTGGGAAAATCTCGGTGATGACATTGACGACATGGAGG 954
Query 899 ATATAGAGGATCAGATAGAGGTTACACCAAGGAAGAAGAGCTTTCGCCGGTTTTTAAGAA 958
|||||||||| |||| |||||||||||||| ||||||||||||| || ||||||| ||||
Sbjct 955 ATATAGAGGAGCAGAGAGAGGTTACACCAAAGAAGAAGAGCTTTAGCAGGTTTTTTAGAA 1014
Query 959 GTGGCATTAAACATATTCTTGGGAAGTTCAGTTCTTCAAAGATCAATTCGCCTTCGAGCA 1018
||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1015 GTGGCATCAAACATATTCTTGGGAAGTCCAGTTCTTCAAAGATCAAGCCGCCTTCGAGCA 1074
Query 1019 GTGAGACAAGACGTTCGAATCGCCAAAGCTTTCTCAGCTCTGGTAATACATTTTGCCTTA 1078
|||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 1075 GTGAGATTAGACGTTCGAATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTTGGCCTTA 1134
Query 1079 GTCTTAAAGCTTCATGCACTTTGATGTCTTCATATGAAGGGTGGCCAATCATGAGCGCAG 1138
|||| |||||||||||||||| | |||||| || |||||||||||||||||| |||||
Sbjct 1135 GTCTCAAAGCTTCATGCACTTGGGTGTCTTTTTACGAAGGGTGGCCAATCATGTGCGCAA 1194
Query 1139 ACAACTTTTCCCTTCATAAACTACCAATGAAGAAACCTC-TCGATCA-CGACGTGTATGC 1196
||| |||||||||| ||||||||||||||||||| || | ||||| | | | | ||||||
Sbjct 1195 ACAGCTTTTCCCTTTATAAACTACCAATGAAGAATCC-CATCGATAATC-AAGAGTATGC 1252
Query 1197 GGGTTTGTGGGGAGGAACGTTTGGCTGGCCCCCTGGGAAAGATATTGAAGATGAGTCCCT 1256
||||||||||||||||||||||||||||| ||||||||| ||||||||| | || | ||
Sbjct 1253 CGGTTTGTGGGGAGGAACGTTTGGCTGGCCACCTGGGAAATATATTGAAGGTAAGGCTCT 1312
Query 1257 TCTCTTATTAATGCTCACTTATGGAGAATCTGAAGAGGGTAGTGAGAGAATTCTTTTCGG 1316
| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1313 TTTCTTACTAATGCTCACTTATGGAGAATCTGAAGTGGGTAGTGAGAGAGTTCTTTTCGG 1372
Query 1317 GACGAAAATACTC--A-G-T-T-ATTTTGCTGAGCATCCTAATGGATCCTCAATGTTTGT 1370
||||||||||||| | | | | | | ||| | || ||| ||||||||||||||||||||
Sbjct 1373 GACGAAAATACTCGAAGGCTATAACTCTGCGGGGCGTCCCAATGGATCCTCAATGTTTGT 1432
Query 1371 TGTAAATATTGACACGCCTTCCCTTGAGCCGTTTCCATTTGATACAGATGGAAGAGATTT 1430
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 1433 TGTAAATATTGACACGCCTTCCCTTGAGCCCTTTCCATTTGATACCGATGGAAGATATTT 1492
Query 1431 CGAGCATTCTTACACGGGAGAGGGTATCGCTGACGGTTATGGATTCCGATACCCCGGTTC 1490
|||||| ||||||| ||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1493 CGAGCAATCTTACATGGGAGAGGGTATCGCAGACGGTTATGGATTCCGCTATCCCGGTTC 1552
Query 1491 AAAACCTGGTTCCCTTTTCGTAAGCTCTAATGATCTTCTTGCATTCGTTTGGCAAG-GAA 1549
|||||||||||||||||| |||| |||||||| |||||||||||| ||| |||||| ||
Sbjct 1553 AAAACCTGGTTCCCTTTTTGTAATCTCTAATGGTCTTCTTGCATTTGTT-GGCAAGAGAC 1611
Query 1550 CTGAAGATGTGATTACATTGCAAAGAATAAACCTTG 1585
| ||||||||||||||||||||||| |||||||||
Sbjct 1612 CA-AAGATGTGATTACATTGCAAAGAGTAAACCTTG 1646
Score = 817 bits (442), Expect = 0.0
Identities = 551/603 (91%), Gaps = 10/603 (2%)
Strand=Plus/Plus
Query 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCCGAAGATGTGTTT 60
|||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 21 ATGATGAATAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAAGATGTTTTT 80
Query 61 GCTGTTATCTCTCGTTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 120
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GCTGTTATCTCACGCTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 140
Query 121 AGTCTTTGTGCCCTTGTCGATTCCGAGAAGACGTGGCTTGTGCAATGTGAAGAAGTAAAA 180
||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 141 AGTATTTGTGCCCTTGTTGATTCCGAGAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
Query 181 GTTCTTCCTTTGATTGAACTAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
Query 241 TGTAGGTTTCTTGTGGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAAGAAAACCCT 300
|||||||| ||||| |||||||||||||| ||| ||||||||||||| ||| | ||||||
Sbjct 261 TGTAGGTTCCTTGTAGAGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAGAACCCT 320
Query 301 GAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 360
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 321 GAACTTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATA 380
Query 361 ATTCCACAA-AAGGTTGCTCCTTTGTGGATTCAAGAGGGCCAAGTCAAGTGGTCACCGGT 419
||||| ||| ||| ||| |||||||||||||||||| || ||| | ||||||||||||
Sbjct 381 ATTCCTCAAGAAG-TTGGTCCTTTGTGGATTCAAGAAGGACAACTTGTGTGGTCACCGGT 439
Query 420 GTTTGAGATAATTTGCGGCT-TTGATGGCTCTAA-GGGTTTTTTCCTCCATGGAAGAGAC 477
|||||||||||| ||||| | ||||||||||||| |||||||||| ||||||||||||||
Sbjct 440 GTTTGAGATAATCTGCGG-TGTTGATGGCTCTAACGGGTTTTTTC-TCCATGGAAGAGAC 497
Query 478 AAACAAGGTAGTTTCTTATACCCTGGTTTCGTTAT-GGACATCGAGAAGAGTTGCAATGT 536
||| |||| |||| ||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct 498 AAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATCGG-CATCGAGAAGAGTTGCAATGA 556
Query 537 GCTTCTACTCGAAGTTGAGCCGAGGTCA-GAGAAGAGTTCGTGCAATGAGATTGAGAGAG 595
||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||
Sbjct 557 GCTTCTACTCGAAGTTGAGCCGAGG-CAAGAGAAGAGTTTGTGCAATGAGATTGAGAAAG 615
Query 596 AAG 598
|||
Sbjct 616 AAG 618
> Ahg947866 jgi|Araly1|947866|scaffold_704095.1
Length=1769
Score = 994 bits (538), Expect = 0.0
Identities = 798/916 (87%), Gaps = 47/916 (5%)
Strand=Plus/Plus
Query 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCCGAAGATGTGTTT 60
|||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 21 ATGATGAACACGGAATCATTTGGTGCTTGCTTGCTTCTTACGCTTCCAGAAGATGTGTTT 80
Query 61 GCTGTTATCTCTCGTTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 81 ACTGTTATCTCTCGTTTTCTTTCACCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 140
Query 121 AGTCTTTGTGCCCTTGTCGATTCCGAGAAGACGTGGCTTGTGCAATGTGAAGAAGTAAAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AGTCTTTGTGCCCTTGTCGATTCCGAGAAGACGTGGCTTGTGCAATGTGAAGAAGTAAAG 200
Query 181 GTTCTTCCTTTGATTGAACTAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
|||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 201 GTTCTTCCTTTGTTTGAAATAGTCCAATGGCGAAGCGGGATCTCTTCTTACAAGGCACTT 260
Query 241 TGTAGGTTTCTTGTGGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAAGAAAACCCT 300
|||||||||||||| |||||||||||||| ||| ||||||||||||| ||| ||||||||
Sbjct 261 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAAAACCCT 320
Query 301 GAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 360
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 GAACTTGGGAATGTCGTTTATGTCATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 380
Query 361 ATTCCACAAAAGGTTGCTCCTTTGTGGATTCAAGAGGGCCAAGTCAAGTGGTCACCGGTG 420
|||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 381 ATTCCACAAAAGGTTGGTCCTTTGTGGATTCAAGAGGGCCGAGTTAAGTGGTCACCTGTG 440
Query 421 TTTGAGATAATTTGCGGCTTTGATGGCTCTAA-GGGTTTTTTCCTCCATGGAAGAGACAA 479
||||||||||| ||||| ||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 441 TTTGAGATAATCTGCGGTTTTGATGGCTCTACCGGGTTTTT-CCTTCATGGAAGAGACAA 499
Query 480 ACAAGGTAGTTTCTTATACCCTGGTTTCGTTATGGACATCGAGAAGAGTTGCAATGTGCT 539
| |||| |||| ||| ||||||||||| ||||||| ||| ||||||||||||||| ||||
Sbjct 500 AGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATTTGCT 559
Query 540 TCTACTCGAAGTTGAGCCGAGGTC-AGAGAAGAGTTCGTGCAATGAGATTGAGAGAGAAG 598
|| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 560 TCAACTCGAAATTGAGCCGAGG-CGAGAGAAGAGTTCGTGCAATGAGATTGAGAGAGGAG 618
Query 599 --T-A-G---GGG--A--------------T-CCATTTGGAGAT-CTAGACTTC-AGTGA 632
| | | ||| | | |||||| | ||| || | ||| || ||
Sbjct 619 CCTCAAGAAAGGGGGAAAAGGAGGGAGAGGTTCCATTTTG-GATGCTCG-CTTTTAGCGA 676
Query 633 TAGAATGAACTTACT-AGATATAGTGACAAAACATGTAAGTCTACGA-GTCGATGAA-CC 689
||||| |||||||| | |||| ||||||| |||||| || ||| | || | || | ||
Sbjct 677 TAGAAAAAACTTACTCA-ATATTGTGACAAGCCATGTAGGTATAC-ATGTGG-TGGAGCC 733
Query 690 ATTAACA-GGAAATTTATTTCCCACCAGGTCAAAATATGACGAAGCGATGATGTTGGAAC 748
||||| | |||| ||||||||||| | |||||| |||| ||||| ||| || | ||||
Sbjct 734 ATTAA-ATGGAAGGTTATTTCCCAC-A--TCAAAAGATGATGAAGCAATGTTGGTCGAAC 789
Query 749 GCAGAAACATGCTCCTTAAAATGCTCAAATTTGGTGGAAACTGGAAGCACATAAACTTGG 808
|||||| ||||||| ||||||||| ||| ||||||||||| |||||| |||| || ||||
Sbjct 790 GCAGAACCATGCTCTTTAAAATGCACAAGTTTGGTGGAAAGTGGAAGAACATGAATTTGG 849
Query 809 AGGAGGATGAGCAGTTGTGTTACAATCATATAG-AGATAGACATaaaaaa-aTTGTTGGA 866
|||||||||| |||||||||||||||| ||| | || |||||||||| | || ||||||
Sbjct 850 AGGAGGATGATCAGTTGTGTTACAATCCTAT-GCAGCTAGACATAAACGAGAT-GTTGGA 907
Query 867 AAATCTTGGTGATGAC 882
||||||||||||||||
Sbjct 908 AAATCTTGGTGATGAC 923
Score = 549 bits (297), Expect = 2e-155
Identities = 615/761 (81%), Gaps = 51/761 (7%)
Strand=Plus/Plus
Query 988 AGTTCTTCAAAGATCA-ATTCGCCTTCGAGCAGTGAGACAAGACGTTCGAATCGCCAAAG 1046
||||||||||||| || | | |||||||||||||| | |||| |||||||||||||||
Sbjct 996 AGTTCTTCAAAGAACACA-GCACCTTCGAGCAGTGAAATTAGACATTCGAATCGCCAAAG 1054
Query 1047 CTTTCTCAGCTCTGGTAATACATTTTGCCTTAGTCTTAAAGCTTCATGCACTTTGATG-T 1105
|||||| ||||||||| |||||||| | |||||||| |||||||| | ||| ||| | |
Sbjct 1055 CTTTCTTAGCTCTGGTGATACATTTGGTCTTAGTCTCAAAGCTTCCT--ACTCTGA-GCT 1111
Query 1106 --CTTCATATGAAGGGTGGCCAAT-CATG-AGCGCAGA-CAACTTTTCCCTTCATAAACT 1160
||| || ||||||||||| || |||| | ||| | | ||||||| ||| |||||||
Sbjct 1112 AAATTCTTACGAAGGGTGGCC-ATACATGTA-CGCTCATC-ACTTTTCACTTTATAAACT 1168
Query 1161 ACCAATGAAGAAACCTC-TCGATCACG-A--C---GTGTATGCGGGTTTGTGGGGAGGAA 1213
||| | |||||| || | ||||||| | | |||||||| ||||||||||||||||
Sbjct 1169 ACCGGTTAAGAAA-TTCGTTGATCACGAAGTCGAAGTGTATGCCGGTTTGTGGGGAGGAA 1227
Query 1214 CGTTTGGCTGGCCCCCTGGGAAA-G--AT-ATTG-AA----GATGAGTCCCTTCT-CTTA 1263
||||||||||||| |||||||| | | | | || || |||| ||| | ||||
Sbjct 1228 CGTTTGGCTGGCCAGCTGGGAAATGTCCTAAAAGTAAGCCCGAAAAGTCTCTT-TACTTA 1286
Query 1264 TTAATGCTCACTTATGGAGAATCTGAAGAGGGTAGTGAGAGAATTCT-TTTCGGGACGAA 1322
| ||||||||||||| ||||||||||||| || ||||||| |||| || ||||| ||
Sbjct 1287 CTGATGCTCACTTATGAAGAATCTGAAGAGTATAATGAGAGAGTTCTCATT-GGGACAAA 1345
Query 1323 AATACTC--A-GTTA---TTTTGCTGA-GCATCCTAATGGATCCT-CAATGTTTGTTGTA 1374
||||||| | | | | || ||| || ||| |||||| || |||||||| |||||
Sbjct 1346 AATACTCGAAGGAAAGCGCTATG-TGAGGCGTCCCAATGGA-ACTGCAATGTTTATTGTA 1403
Query 1375 AATATTGACACGCCTTCCCTTGAGCCGTTTCCATTTGATACAGATGGAAGAGATTTCGAG 1434
||||| || || ||| |||||||||| ||||| | ||| |||||| || |||||| |||
Sbjct 1404 AATATCGATACACCTACCCTTGAGCCCTTTCCGGTGGATGCAGATGAAATAGATTTTGAG 1463
Query 1435 CATTCTTACACGGGAGAGGGTATCGCTGACGGTTATGGATTCCGATACCCCGGTTCAAAA 1494
|||||||| ||||| | |||||||| || ||||| |||||||| || ||||||||||||
Sbjct 1464 AATTCTTACTCGGGAAACGGTATCGCAGAAGGTTACGGATTCCGCTATCCCGGTTCAAAA 1523
Query 1495 CCTGGTTCCCTTTTCGTAAGCTCTAATGATCTTCTTGCATTCGTTTGGCAAGGAACTGAA 1554
||||||||||||||||| | | |||||||||||||||||||||||||||||| ||| ||
Sbjct 1524 CCTGGTTCCCTTTTCGTGATCACTAATGATCTTCTTGCATTCGTTTGGCAAGAAACCAAA 1583
Query 1555 GATGTGATTACATTGCAAAGAATAAACCTTGGAGAGATCTTGAAGAAGAGTTT-AGGTTC 1613
||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||| ||||||
Sbjct 1584 GATGTGATTACGTTGCAAAGACTAAACCTTGCAGAGATCTTGAAGAA-AGTTTTAGGTTC 1642
Query 1614 TTGTGTTTCACCTTTGCTTCCAACAAAGAATTTTACATATACTAA-AAGGTCTTAC-TCA 1671
|||||| | ||||||| |||||| ||||||||||| |||| | | |||||| ||| | |
Sbjct 1643 TTGTGTGCCGCCTTTGCCTCCAACTAAGAATTTTACTTATA-TGAGAAGGTCCTACAT-A 1700
Query 1672 AACGTGTTTGCCAAGTCATCGACCTATTCGTCTTCCTCCGA 1712
|||| |||| |||||||||||||| || |||||| ||||||
Sbjct 1701 AACGAGTTTACCAAGTCATCGACCGATCCGTCTTACTCCGA 1741
> Ahg947867 jgi|Araly1|947867|scaffold_704096.1
Length=1480
Score = 811 bits (439), Expect = 0.0
Identities = 551/604 (91%), Gaps = 12/604 (2%)
Strand=Plus/Plus
Query 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCCGAAGATGTGTTT 60
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 21 ATGATGAACAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAATATGTGTTT 80
Query 61 GCTGTTATCTCTCGTTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 120
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 81 GCTGTTATCTCACGTTTTCTTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAA 140
Query 121 AGTCTTTGTGCCCTTGTCGATTCCGAGAAGACGTGGCTTGTGCAATGTGAAGAAGTAAAA 180
||| |||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||
Sbjct 141 AGTATTTGTGCCCTTGTCCATTCCGACAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
Query 181 GTTCTTCCTTTGATTGAACTAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
Query 241 TGTAGGTTTCTTGTGGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAAGAA-AACCC 299
|||||||||||||| |||||||||||||||||| ||||||||||||| ||| || |||||
Sbjct 261 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTGTTGGGATTTGGGTTCAA-AAGAACCC 319
Query 300 TGAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGAT 359
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 320 TGAACGTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGAT 379
Query 360 AATTCCACAA-AAGGTTGCTCCTTTGTGGATTCAAGAGGGCCAAGTCAAGTGGTCACCGG 418
|||||| ||| ||| ||| |||||||||||||||||| || ||| | ||||||||| |
Sbjct 380 AATTCCTCAAGAAG-TTGGTCCTTTGTGGATTCAAGAAGGACAAATTGTGTGGTCACCAG 438
Query 419 TGTTTGAGATAATTTGCGGCT-TTGATGGCTCTAAGGGTTTTTTCCTCCATGGAAGAGAC 477
||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 439 TGTTTGAGATAATCTGCGG-TGTTGATGGCTCTAACGGTTTTTTCCTCCATGGAAGAGAC 497
Query 478 AAACAAGGTAGTT-TCTTATACCCTGGTTTCGTTATGGACATCGAGAAGAGTTGCAATGT 536
|| |||| |||| | || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 498 GAAGAAGGCAGTTGT-TTGTACCCTGGTTTCGTTATGGGCATCGAGAAGAGTTGCAATGA 556
Query 537 GCTTCTACTCGAAGTTGAGCCGAGGTCA-GAGAAGAGTTCGTGC-AATGAGATTGAGAGA 594
||||||||||||||||||||||||| || ||||||||||||| | |||||||||||||||
Sbjct 557 GCTTCTACTCGAAGTTGAGCCGAGG-CAAGAGAAGAGTTCGT-CTAATGAGATTGAGAGA 614
Query 595 GAAG 598
|||
Sbjct 615 AAAG 618
Score = 645 bits (349), Expect = 0.0
Identities = 625/754 (83%), Gaps = 35/754 (5%)
Strand=Plus/Plus
Query 600 AGGGGATCCATTTGGAGATCTAGACTTCAGTGATAGAATGAACTTACTAGATATAGTGAC 659
||||| |||||||||| |||||| ||| |||||||||| || |||||| ||||||||| |
Sbjct 656 AGGGGTTCCATTTGGAAATCTAGGCTTTAGTGATAGAAGGAGCTTACTTGATATAGTGGC 715
Query 660 AAAACATGTAAGTCTACGAGTCGATGAACCATTAACAGGAAATTTATTTCCCACCAGGTC 719
||| |||||||||||||| |||| ||||||||||| |||||| |||||||||||||||||
Sbjct 716 AAACCATGTAAGTCTACGTGTCGGTGAACCATTAAGAGGAAAGTTATTTCCCACCAGGTC 775
Query 720 -AAA-AT-ATGACGAAGCGATGATGTTGGAACGCAGAAACATGCTCCTTAAAATGCTCAA 776
||| || ||||||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 776 GAAAGATGATGACGAAGCGGTGTTGTTGGAACGCAGAACCATGCTCCTTAAAATGCTCAA 835
Query 777 ATTTGGTGGAAACTGGAAGCACATAAACTTGGAGGAGGATGAGCAGTTGTGTTACAATCA 836
||||||||| |||||||||||||| || |||||||||||||| ||| | | ||| ||||
Sbjct 836 ATTTGGTGGGAACTGGAAGCACATGAATTTGGAGGAGGATGATCAGCTATATTATAATCC 895
Query 837 TATAG-AGATAGACATaaaaaa-aT-TGTTGGAAAATCTTGGTGATGACATTGACAACAT 893
||| | || |||||||||| | || || ||||||||| |||||| ||| ||||| |||
Sbjct 896 TAT-GCAGGTAGACATAAATGAGATATG--GGAAAATCTCGGTGATAACACTGACATCAT 952
Query 894 GGAGGATATAGAGGATCAGATAGAGGTTACACCAAGGAAGAAGAGCTTTCGCCGGTTTTT 953
||| |||| |||| |||||| ||||| |||||||||||||||||||||| || ||||||
Sbjct 953 GGACGATAGAGAGTATCAGAGAGAGGCTACACCAAGGAAGAAGAGCTTTAGCATGTTTTT 1012
Query 954 AAGAAGTGGCATTAAACATATTCTTGGGAAGT-TCAGTTCTTCAA-AGATCAATTCGC-- 1009
| ||||||||| | |||||||||||||||| | ||| || || ||| || |||
Sbjct 1013 CATAAGTGGCATCATGCATATTCTTGGGAAGTCT-AGTCCTG-AAGAGAACACGCCGCGG 1070
Query 1010 C-TTCGAGCAGTGAGACAAGACGTTCGAATCGCCAAAGCTTTCTCAGCTCTGGTAATACA 1068
| |||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||
Sbjct 1071 CCTTCGAGCAGTGAGATTAGACGTTCGAATCGCCAAACCTTTCTTAGCTCTGGTGATACA 1130
Query 1069 TTTTGCCTTAGTCTTAAAGCTTCATGCACTTTGATGTCTTCATATGAAGGGTGGCCAATC 1128
|| |||||||||| |||||||| | |||| ||||||||| || ||||||||||||||
Sbjct 1131 TTCGGCCTTAGTCTCAAAGCTTCCTACACTGAGATGTCTTCTTACCAAGGGTGGCCAATC 1190
Query 1129 ATGAGCGCAGA-CAACTTTTCCCTTCATAAACTACCAATGAAGAAACCTC-TCGATCA-C 1185
||| | || | | |||||||||||||||||||||||||||||| || | || || | |
Sbjct 1191 ATGTCC-CAAAACCGCTTTTCCCTTCATAAACTACCAATGAAGAATCC-CATCAATAATC 1248
Query 1186 GACGTGTATGCGGGTTTGTGGGGAGGAACGTTTGGCTGGCCCCCTGGGAAA-GATATTGA 1244
| | |||||| ||||||||||||||||||||||||||||| |||| | || | | ||
Sbjct 1249 AA-GAGTATGCCGGTTTGTGGGGAGGAACGTTTGGCTGGCCACCTGAGCAATG-TCGAGA 1306
Query 1245 AGATGAGTCC-------CT-TCT-CTTATTAATGCTCACTTATGGAGAATCTGAAGAGGG 1295
|||| ||||| || | | |||| | |||||||||||| ||||||||| |||
Sbjct 1307 AGATAAGTCCAGAAAGGCTCTATTCTTACTGATGCTCACTTATAAAGAATCTGAGGAGAA 1366
Query 1296 TAGTGAGAGAATTCTT-TTCGGGACGAAAATACT 1328
|||||||||| |||| || ||||||||||||||
Sbjct 1367 TAGTGAGAGAGTTCTCATT-GGGACGAAAATACT 1399
> Ahg494041 jgi|Araly1|494041|fgenesh2_kg.7__3474__AT5G39450.1
Length=1969
Score = 776 bits (420), Expect = 0.0
Identities = 1278/1670 (77%), Gaps = 147/1670 (9%)
Strand=Plus/Plus
Query 12 GGAATCGTTTGGAGCTTGCTTGCTTCT-TACGCTTCCCGAAGATGTGTTTGCTGTTATCT 70
|||||| ||||| |||||||||||||| | | ||||| |||||||| ||||||||||
Sbjct 199 GGAATCATTTGGTGCTTGCTTGCTTCTGT-CTCTTCCAGAAGATGTAATTGCTGTTATAG 257
Query 71 CTCGTTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAAAGTCTTTGTG 130
|||||||| | |||||||| |||||||||||||||| ||| ||| |||||||||| ||||
Sbjct 258 CTCGTTTTGTATCTCCAAGAGACATTTGCAATCTAAGCTTATGCTGCAAAAGTCTCTGTG 317
Query 131 CCCTTGTCGATTCCGAGAA-GA-CGTGGCTTGTGCAATGTGAAGAAGTAAAAGTTCTTCC 188
|| | ||||| || || || | ||||||||||||||||||| |||||| |||||| |
Sbjct 318 AGGTTTTTGATTCAGA-AAGGATC-TGGCTTGTGCAATGTGAAGTAGTAAAGGTTCTTTC 375
Query 189 TTTGAT-TGAACTAG-TCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTTTGTAGG 246
||| || |||| | | |||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 376 TTT-ATCTGAAAT-GATCCAATGGCGAATCGGAATCTCTTCTTATAAGGCGTTTTGTCGG 433
Query 247 TTTCTTGTG-GAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAAGAAAACCCTGAACT 305
||||||| | ||||| ||||||| ||| ||||| ||||||| || |||||||||||||
Sbjct 434 TTTCTTG-GAGAGGTAATGAAGCCTCTTGTTGGGGTTTGGGTTCACCAAAACCCTGAACT 492
Query 306 TGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAATTCC 365
|||||||||||||||||| ||||||||||| || || ||||||||||| |||||||||||
Sbjct 493 TGGGAATGTTGTTTATGTAATGCCTGGTTTTTTATCCGTTGTTGGGTGTCGGATAATTCC 552
Query 366 ACAAAAGGTTGCTCCTTT-GTGGATTCAAGAGGGC-CAAGTCAAGTGGTCACCGGTGTTT 423
|||| |||||| |||||| | ||||| | |||| | | ||| | ||||||||| ||||||
Sbjct 553 ACAAGAGGTTGGTCCTTTAG-GGATTGAGGAGG-CTCGAGTTATGTGGTCACCTGTGTTT 610
Query 424 GAGATAATTTGCGGCTTTGATGGCTCT---AAGGGTTTTTTCCTCCATGGAAGAGACA-A 479
|||||||| ||||| |||||||||||| ||| ||||| |||||||||||||||| |
Sbjct 611 GAGATAATCTGCGGTTTTGATGGCTCTGCCAAG--TTTTT-CCTCCATGGAAGAGACGGA 667
Query 480 ACAAG-GTAGTTTCTTA-TAC--CCTGGTTTCGTTATGGACATCGAGAAGAGTTGCAATG 535
| || | | || || | | |||||||| ||||||| ||| ||||||||||| ||||
Sbjct 668 A-AACTGCA-TTGCTGCCTGCATCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGTAATG 725
Query 536 TGCTTCTACTCGAAGTTGAGCCGAGGTC-AGAGAAG-AGTTCGTGCAATGAGATTGAGA- 592
||||| ||||||| |||||| ||||| | ||||||| |||| ||||| |||||||||||
Sbjct 726 TGCTTTTACTCGAGGTTGAGACGAGG-CGAGAGAAGGAGTT-GTGCAGTGAGATTGAGAC 783
Query 593 -GAG--------A-AGT-AGGGG---A-T--CCATTTGG-AGATCTAGACTTCAGTGATA 634
| | | || ||||| | | |||||| | | | ||| ||| ||| |||
Sbjct 784 TGTGTTGTTGGGAGAGACAGGGGTTCAGTTACCATTTCGCAAA-CTACCCTTTAGTTATA 842
Query 635 GAATGAACTTACTAGATATAGTGACAAA-ACATGTAAGTCTACGAGT-CGATGAACCATT 692
||| ||| ||||| | |||||||||| || ||| || ||| || | ||| | ||
Sbjct 843 GAAGGAATTTACTTCACATAGTGACAAGCAC-TGTTGGTATACCTGTACC-TGATCTATC 900
Query 693 AACAGGAAAT-TTATTTCCCACCAGGTCAAAATATGACGAAGCGATGATGT-TGGAACGC 750
|| | ||| ||||||||||| || ||| |||| |||||| || ||| || |||||
Sbjct 901 AAGTG-AAAGGTTATTTCCCACT---TCGAAAGATGATGAAGCGGTGTTGTCTG-AACGC 955
Query 751 AGAAACATGCTCCTTAAAATGC-TCAAATTTGGTGGAAACTGGAAGCACATAAACTTGGA 809
|||| ||||||||||||||||| | || ||||||| | ||||| ||||| ||| ||||
Sbjct 956 AGAACCATGCTCCTTAAAATGCAT-AAGTTTGGTGTTGATTGGAATCACATGAACCTGGA 1014
Query 810 GGAGGATGAGCAGTTG-TGTTACAATCATATAGAGATAGACATaaaaaaaTTGTTGGAAA 868
||| || | | | | | || ||| || || | |||||||||| ||| || ||||
Sbjct 1015 GGATGA-GTGTA-TAAATATTCCAA--ATC-AG-G-TAGACATAAACGAATCGT-GGAAG 1066
Query 869 -ATCTTGG-TGATGACATT-GACAA-CATGGAGGATATAGAGGATCAGA-TAGAGGTTAC 923
||||||| | ||| | | || || | ||| | || || | | || | || ||
Sbjct 1067 CATCTTGGATT-TGA-AGTCGATAATC--GGA--ACATGGACGCTGGGAATC-AG---AC 1116
Query 924 ACCAAGGAAGAAGAGCTTTCGCCGGTTTTTAAGAAGTGGCATTAAA-CATATTCTTGGGA 982
|| |||||||| | |||| | ||| ||| ||||||||||| ||| |||||||||||||
Sbjct 1117 ACAAAGGAAGA-G--CTTTAGTAGGTATTTCAGAAGTGGCAT-AAAGCATATTCTTGGGA 1172
Query 983 AGT-TCAGTTCTTCAAAGATCAATTCGCCTTCGAGCAGTGAGACAAGACGTTCGAATCGC 1041
|| | ||||||| ||||| || || |||| || |||||||| |||| || ||||| |
Sbjct 1173 GGTCT-AGTTCTTTAAAGAACACGTCTTCTTCAAGAAGTGAGACTAGACCTTGGAATCTC 1231
Query 1042 CAAAGCTTTCTCAGCTCTGGTAATAC-ATTTTGCCTTAGTCTTAAAGCTTC-ATGCACTT 1099
|||| ||||| | | |||| || | || | |||||||| |||||||| | | | ||
Sbjct 1232 CAAAAATTTCTTAATTTTGGTGATTCCATAG-GTCTTAGTCTCAAAGCTTCCAAG-A-TT 1288
Query 1100 T-GATGTCTTCATATGAAGGGTGGCCAATCATG-AGCGCAGACAACTTT-T-CCCTTCAT 1155
| ||||||| ||| |||| ||||||| |||| | || | || | || | ||||| ||
Sbjct 1289 AAGCTGTCTTCTTATCAAGGTTGGCCAAACATGGA-CGAA-ACC-CGTTATGCCCTTTAT 1345
Query 1156 AAACTACCAATGAAGAAACCTC-TCGATCACGACGTGTATGCGGGTTTGTGGGGAGGAAC 1214
|| ||||| || ||||| || | ||| | |||| | |||||| || ||||||||||||||
Sbjct 1346 AAGCTACCGATTAAGAATCC-CATCGCTAACGAAGAGTATGCCGGCTTGTGGGGAGGAAC 1404
Query 1215 GTTTGGCTGGCCCCCTGGGAAA-GATATTGAAGAT------G--A-GTCCCTTCTCTTAT 1264
||||||||||| || || ||| | || |||||| | | | | ||| | |||
Sbjct 1405 TTTTGGCTGGCCACCAGGAAAATG-TACAGAAGATAAACCCGGGAAGGCTCTTTTTTTAC 1463
Query 1265 TAATGCTCACTTATGGAGAATCTGAAGAGGGTAGTGAGAGAATTCTTTTCGGGACGAAAA 1324
| |||||| |||||| ||||||| |||| |||| ||| ||| ||||| | ||||||||||
Sbjct 1464 TGATGCTCTCTTATGAAGAATCTCAAGATGGTACTGAAAGACTTCTTATAGGGACGAAAA 1523
Query 1325 TACTC-A-GTTATTT--TGCTG-A-GCATCCTAATGGATCCT-CAATGTTTGTTGTAAAT 1377
||||| | | | | | | | | ||||||||||||||| | ||||||||||| ||||
Sbjct 1524 TACTCGAAGGAACTCACTACGGGATGCATCCTAATGGATC-TGCAATGTTTGTTATAAAG 1582
Query 1378 ATTGACACGCCTTCCCTTGAGCCGTTTCCATTT-GATACAGATGGAAGA-GATTTCGAGC 1435
||||| | |||||| |||||| ||||| ||| |||||| ||||| || ||||| ||||
Sbjct 1583 ATTGATTCACCTTCCTTTGAGCTTTTTCC-TTTCGATACAAATGGA-GAAGATTTTGAGC 1640
Query 1436 ATTCTTACACGGGAGAGGGTA-TCGCTGACGGTTATGGATTCCGATACCCCGGTT-CAAA 1493
|||||||| | ||||| |||| | || | |||||||| ||||| || || |||| ||||
Sbjct 1641 ATTCTTACGCAGGAGAAGGTACT-GCAAAGGGTTATGGTTTCCGGTATCCTGGTTACAAA 1699
Query 1494 ACCTGGTTCCCTTTTCGTAAGC-TCTAATGATCTTCT--TGCATTCGTTTGGCAAGGAAC 1550
|| ||| | |||||||||| | ||||| | |||||| || || |||||| ||| |||
Sbjct 1700 -CCGGGTACACTTTTCGTAA-CATCTAAAGGTCTTCTCATGT-TT-GTTTGGAAAGCAAC 1755
Query 1551 TGAAGATGTGATT-ACATTGCAAAGAATAAACCTTGGAGAGATCTTGAAG 1599
| ||| |||| || ||||| |||||| | ||||||||||| |||| |||
Sbjct 1756 TAAAGTTGTG-TTGACATTACAAAGACTTGACCTTGGAGAGCTCTT-AAG 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5