BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39480.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947866 jgi|Araly1|947866|scaffold_704095.1 2309 0.0
Ahg947869 jgi|Araly1|947869|scaffold_704098.1 976 0.0
Ahg947867 jgi|Araly1|947867|scaffold_704096.1 922 0.0
Ahg494041 jgi|Araly1|494041|fgenesh2_kg.7__3474__AT5G39450.1 632 2e-180
> Ahg947866 jgi|Araly1|947866|scaffold_704095.1
Length=1769
Score = 2309 bits (1250), Expect = 0.0
Identities = 1568/1721 (91%), Gaps = 24/1721 (1%)
Strand=Plus/Plus
Query 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCAGAAGATGTGTTT 60
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGATGAACACGGAATCATTTGGTGCTTGCTTGCTTCTTACGCTTCCAGAAGATGTGTTT 80
Query 61 GCTGTTATTTCTCGTTTTCTTTCTCCAAGCGATATTTGCAATCTAATCTTGTGCGGCAAA 120
||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 81 ACTGTTATCTCTCGTTTTCTTTCACCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 140
Query 121 AGTCTGCCTGCCCTTGTCGATACCGAGAAGATGTGGCTTGTGCAATGTGAAGAAGTAAAG 180
||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 141 AGTCTTTGTGCCCTTGTCGATTCCGAGAAGACGTGGCTTGTGCAATGTGAAGAAGTAAAG 200
Query 181 GTTCTTCCTTTGTTGGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 201 GTTCTTCCTTTGTTTGAAATAGTCCAATGGCGAAGCGGGATCTCTTCTTACAAGGCACTT 260
Query 241 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAAAACCCT 300
||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct 261 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAAAACCCT 320
Query 301 GAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 360
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 GAACTTGGGAATGTCGTTTATGTCATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 380
Query 361 ATTCCACAAAAGGTTGCTCCTTCGTGGATTCAAGAGGACCGAGTTAAGTGGTCACCGGTG 420
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 381 ATTCCACAAAAGGTTGGTCCTTTGTGGATTCAAGAGGGCCGAGTTAAGTGGTCACCTGTG 440
Query 421 TTTGAGATAATCTGCGGGTTTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGACAAA 480
||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||
Sbjct 441 TTTGAGATAATCTGCGGTTTTGATGGCTCTACCGGGTTTTTCCTTCATGGAAGAGACAAA 500
Query 481 GAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATGTACTT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 501 GAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATTTGCTT 560
Query 541 CAGCTCGATGTTGTGCCgaggcaagagaagagttcgtgcaatgagattgagagaggagcc 600
|| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 561 CAACTCGAAATTGAGCCGAGGCGAGAGAAGAGTTCGTGCAATGAGATTGAGAGAGGAGCC 620
Query 601 tcaag--a----g---aggagggagagaTTCCATTTTGGATGCTCGCTTTTAGTGATAGA 651
||||| | | ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 621 TCAAGAAAGGGGGAAAAGGAGGGAGAGGTTCCATTTTGGATGCTCGCTTTTAGCGATAGA 680
Query 652 AAAAATTTGCTCAATATTGTGACAAGCCATGTAAGTCTACATGTGGTGGAACCATTAAAT 711
||||| || |||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 681 AAAAACTTACTCAATATTGTGACAAGCCATGTAGGTATACATGTGGTGGAGCCATTAAAT 740
Query 712 GAAATGTTATTTCCCACATTGAAATATGATGAAGCAATGCTGGTTGAACGCAGAACCATT 771
| || |||||||||||||| ||| |||||||||||||| |||| ||||||||||||||
Sbjct 741 GGAAGGTTATTTCCCACATCAAAAGATGATGAAGCAATGTTGGTCGAACGCAGAACCATG 800
Query 772 CTCCTTAAAATGCACAAGTTTGGTGGAAATTGGAAGAACATGAATTTGGAGGAGGATGAT 831
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 801 CTCTTTAAAATGCACAAGTTTGGTGGAAAGTGGAAGAACATGAATTTGGAGGAGGATGAT 860
Query 832 CAGTTGTGTTACAATCCCATGCAAG-TAAAAATAAACGAGATGTTGGAAAATCTCGGTGA 890
||||||||||||||||| |||| || || | ||||||||||||||||||||||| |||||
Sbjct 861 CAGTTGTGTTACAATCCTATGC-AGCTAGACATAAACGAGATGTTGGAAAATCTTGGTGA 919
Query 891 TGACTAtttttttG--AT-GAAGAGGAGCTGATAGAGGTCACACCAACGGAGAACACGAA 947
||||| ||||||| || |||||||||||||||||||||||||||||||||| |||| |
Sbjct 920 TGACTGGTTTTTTGACATGGAAGAGGAGCTGATAGAGGTCACACCAACGGAGAGCACGCA 979
Query 948 TGTTTTAGGGGAGTCTAGTTCTTCAAAGAACACAACACCTTCGCAG-AGTGAAATTAGAG 1006
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 980 TGTTTTAGGGGAGTCTAGTTCTTCAAAGAACACAGCACCTTCG-AGCAGTGAAATTAGAC 1038
Query 1007 TTTCGAATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTCGGTCTTGGTCTCACAGCTT 1066
||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||
Sbjct 1039 ATTCGAATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTTGGTCTTAGTCTCAAAGCTT 1098
Query 1067 CCTACAGTGAGATGTCTTATTATAAAGGGTGGCCATACATGCACTTTCACCACTTTTTAC 1126
||||| |||| | || ||| ||||||||||||||||| || ||| ||||||| ||
Sbjct 1099 CCTACTCTGAGCTAAATTCTTACGAAGGGTGGCCATACATGTACGCTCATCACTTTTCAC 1158
Query 1127 TTTATAAACTACCAGTTAAGAAAGCCGTCGAT--C-AA---GAAGCGTATGCTGGTTTGT 1180
||||||||||||| ||||||||| ||| ||| | || |||| |||||| |||||||
Sbjct 1159 TTTATAAACTACCGGTTAAGAAATTCGTTGATCACGAAGTCGAAGTGTATGCCGGTTTGT 1218
Query 1181 GGGGAGGAACGATTGGCTGCCCAGCTGGGAAATGTCCTAAAGGTAAGACGGAAAAGTCTC 1240
||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1219 GGGGAGGAACGTTTGGCTGGCCAGCTGGGAAATGTCCTAAAAGTAAGCCCGAAAAGTCTC 1278
Query 1241 TTTACTTACTGATGCTCACTTATGAAGAATCTGAAGAACATAGTGAGAGAGTTCTCATTG 1300
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1279 TTTACTTACTGATGCTCACTTATGAAGAATCTGAAGAGTATAATGAGAGAGTTCTCATTG 1338
Query 1301 GGACAAAAATACTCGAAGGAAAGCGCTATGTGCGTCATCCCAATGGAACTGCAATGTTTG 1360
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 1339 GGACAAAAATACTCGAAGGAAAGCGCTATGTGAGGCGTCCCAATGGAACTGCAATGTTTA 1398
Query 1361 TTGTAAAGATCGATACACCTTCTCTTGATCCCTTTCCAGTGGATGCAAATGAAACACATT 1420
||||||| |||||||||||| | ||||| |||||||| ||||||||| |||||| | |||
Sbjct 1399 TTGTAAATATCGATACACCTACCCTTGAGCCCTTTCCGGTGGATGCAGATGAAATAGATT 1458
Query 1421 TTGAGAATTCTTACTCGGGAGAA-GGTATCGCAGAGGGTTATTCATTCCGCTATACAGGT 1479
|||||||||||||||||||| || ||||||||||| ||||| |||||||||| | |||
Sbjct 1459 TTGAGAATTCTTACTCGGGA-AACGGTATCGCAGAAGGTTACGGATTCCGCTATCCCGGT 1517
Query 1480 TCTAAACCCGGTTCCCTTTTCGTGATTACTAATGATCTTCTCGCATTCGTTTGGAAAGAA 1539
|| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 1518 TCAAAACCTGGTTCCCTTTTCGTGATCACTAATGATCTTCTTGCATTCGTTTGGCAAGAA 1577
Query 1540 ACCAAAGTTGTGATTACGTTGCAAAGACTAAACCTTACAGAGATCTTGAAGAAGGGTTTG 1599
||||||| |||||||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 1578 ACCAAAGATGTGATTACGTTGCAAAGACTAAACCTTGCAGAGATCTTGAAGAAAGTTTTA 1637
Query 1600 GGATCTTGTGTGCCGCCTTTGCCTCCTTCGAAGAATTTTACTTATATGAGAAGGTCCTTC 1659
|| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct 1638 GGTTCTTGTGTGCCGCCTTTGCCTCCAACTAAGAATTTTACTTATATGAGAAGGTCCTAC 1697
Query 1660 ATAAACGAGTTTACCAAGTTATCAACCGATTCGTCTTACTC 1700
||||||||||||||||||| ||| |||||| ||||||||||
Sbjct 1698 ATAAACGAGTTTACCAAGTCATCGACCGATCCGTCTTACTC 1738
> Ahg947869 jgi|Araly1|947869|scaffold_704098.1
Length=1646
Score = 976 bits (528), Expect = 0.0
Identities = 808/935 (86%), Gaps = 51/935 (5%)
Strand=Plus/Plus
Query 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCAGAAGATGTGTTT 60
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 21 ATGATGAATAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAAGATGTTTTT 80
Query 61 GCTGTTATTTCTCGTTTTCTTTCTCCAAGCGATATTTGCAATCTAATCTTGTGCGGCAAA 120
|||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 81 GCTGTTATCTCACGCTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 140
Query 121 AGTCTGCCTGCCCTTGTCGATACCGAGAAGATGTGGCTTGTGCAATGTGAAGAAGTAAAG 180
||| | ||||||||| ||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 141 AGTATTTGTGCCCTTGTTGATTCCGAGAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
Query 181 GTTCTTCCTTTGTTGGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
Query 241 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAAAACCCT 300
|||||||| |||||||||||||||||||| ||| ||||||||||||| ||||| ||||||
Sbjct 261 TGTAGGTTCCTTGTAGAGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAGAACCCT 320
Query 301 GAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 360
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 321 GAACTTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATA 380
Query 361 ATTCCACAA-AAGGTTGCTCCTTCGTGGATTCAAG-AGGACCGAGTTAAGTGGTCACCGG 418
||||| ||| || |||| ||||| ||||||||||| |||| | | || |||||||||||
Sbjct 381 ATTCCTCAAGAA-GTTGGTCCTTTGTGGATTCAAGAAGGA-CAACTTGTGTGGTCACCGG 438
Query 419 TGTTTGAGATAATCTGCGGGT-TTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGAC 477
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 439 TGTTTGAGATAATCTGC-GGTGTTGATGGCTCTAACGGGTTTTTTCTCCATGGAAGAGAC 497
Query 478 AAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATGTA 537
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 498 AAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATCGGCATCGAGAAGAGTTGCAATG-A 556
Query 538 -CTTC-AGCTCGATGTTGTGCCgaggcaagagaagagttcgtgcaatgagattgagagag 595
|||| | ||||| |||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 557 GCTTCTA-CTCGAAGTTGAGCCGAGGCAAGAGAAGAGTTTGTGCAATGAGATTGAGAAAG 615
Query 596 gagcctcaagaga-g-g--a--ggg-a------g--ag--a----TTCCATTTTGGA--T 632
|| ||||||| | | | | ||| | | || | |||||||| ||| |
Sbjct 616 AAGACTCAAGAAAAGAGTTATCGGGTAAAATAAGCGAGGGAGGGGTTCCATTT-GGAAAT 674
Query 633 GCTCG-CTTTTAGTGATAGAAAAAATTTGCTCAATATTGTGACAAGCCATGTAAGTCTAC 691
|| | |||| ||||||||| ||| ||||| |||| ||||||| ||||||||||||||
Sbjct 675 -CTAGACTTT-AGTGATAGAGTAAACTTGCTTGATATAGTGACAAACCATGTAAGTCTAC 732
Query 692 -ATGT-GGTGGAACCATTAA-ATGAAATGTTATTTCCCAC-AT-TG-AAATATGATGAAG 745
| || |||| ||||||||| | ||| ||||||||||||| | | ||| |||||||||
Sbjct 733 GA-GTCGGTG-AACCATTAACAGGAA-TGTTATTTCCCACCAGGTCCAAAGATGATGAAG 789
Query 746 CAATGCTGGTTGAACGCAGAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAATTGGA 805
||||| || |||||||||||||||| ||||||||||||| ||| ||||||||||| ||||
Sbjct 790 CAATGATGTTTGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGGAAACTGGA 849
Query 806 AGAACATGAATTTGGAGGAGGATGATCAGTTGTGTTACAATCCCATGCA-AGTAAAAATA 864
|| || |||| ||||||||| |||| |||||||||||||||| || || | || | |||
Sbjct 850 AGCACCTGAACTTGGAGGAGAATGAGCAGTTGTGTTACAATCATATACAGA-TAGACATA 908
Query 865 AACGAGA-TGTTGGAAAATCTCGGTGATGACTAtt 898
||| | | ||| ||||||||||||||||||| |||
Sbjct 909 AACAA-ACTGTGGGAAAATCTCGGTGATGAC-ATT 941
Score = 435 bits (235), Expect = 7e-121
Identities = 506/633 (80%), Gaps = 34/633 (5%)
Strand=Plus/Plus
Query 955 GGGGAGTCTAGTTCTTCAAAGAACACA-ACACCTTCGCAG-AGTGAAATTAGA-GTTTCG 1011
||| |||| ||||||||||||| || | | |||||| || ||||| |||||| | ||||
Sbjct 1035 GGGAAGTCCAGTTCTTCAAAGATCA-AGCCGCCTTCG-AGCAGTGAGATTAGACG-TTCG 1091
Query 1012 AATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTCGGTCTTGGTCTCACAGCTTCCTAC 1071
||||||||||||||||||||||||||||||||||| || ||| |||||| |||||| | |
Sbjct 1092 AATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTTGGCCTTAGTCTCAAAGCTTCATGC 1151
Query 1072 AGT-GAGATGTCTTATTATAAAGGGTGGCCA-TACATGCACTTTCACCA-CTTTTTACTT 1128
| | | | |||||| ||| ||||||||||| | |||| | || | ||||| |||
Sbjct 1152 ACTTGGG-TGTCTTTTTACGAAGGGTGGCCAAT-CATGTGCGCAAAC-AGCTTTTCCCTT 1208
Query 1129 TATAAACTACCAGTTAAGAAAGCCGTCGATCAAG-AAGCGTATGCTGGTTTGTGGGGAGG 1187
|||||||||||| | ||||| || ||||| || ||| |||||| ||||||||||||||
Sbjct 1209 TATAAACTACCAATGAAGAATCCCATCGAT-AATCAAGAGTATGCCGGTTTGTGGGGAGG 1267
Query 1188 AACGATTGGCTGCCCAGCTGGGAAATGTCCTAAAGGTAAGACGGAAAAGTCTCTTTACTT 1247
|||| ||||||| ||| ||||||||| | | |||||||| | ||| ||| |||
Sbjct 1268 AACGTTTGGCTGGCCACCTGGGAAATATATTGAAGGTAAGGC-------TCT-TTT-CTT 1318
Query 1248 ACTGATGCTCACTTATGAAGAATCTGAAGAACATAGTGAGAGAGTTCTCATT-GGGACAA 1306
||| ||||||||||||| ||||||||||| ||||||||||||||| || ||||| |
Sbjct 1319 ACTAATGCTCACTTATGGAGAATCTGAAGTGGGTAGTGAGAGAGTTCTT-TTCGGGACGA 1377
Query 1307 AAATACTCGAAGGAAAGCGCTATGTGCGTCATCCCAATGGAAC-TGCAATGTTTGTTGTA 1365
||||||||||||| | || || | | | |||||||||| | | ||||||||||||||
Sbjct 1378 AAATACTCGAAGGCTATAACTCTGCGGGGCGTCCCAATGGATCCT-CAATGTTTGTTGTA 1436
Query 1366 AAGATCGATACACCTTCTCTTGATCCCTTTCCAGTGGATGCAAATGAAACACATTTTGAG 1425
|| || || || ||||| ||||| ||||||||| | ||| | ||| || | |||| |||
Sbjct 1437 AATATTGACACGCCTTCCCTTGAGCCCTTTCCATTTGATACCGATGGAAGATATTTCGAG 1496
Query 1426 -AATTCTTAC-TCGGGAGAAGGTATCGCAGAGGGTTATTCATTCCGCTATACAGGTTCTA 1483
||| ||||| | |||||| ||||||||||| |||||| |||||||||| | ||||| |
Sbjct 1497 CAAT-CTTACAT-GGGAGAGGGTATCGCAGACGGTTATGGATTCCGCTATCCCGGTTCAA 1554
Query 1484 AACCCGGTTCCCTTTTCGTGAT-TACTAATGATCTTCTCGCATTCGTTTGGAAAGAAACC 1542
|||| ||||||||||| || || | |||||| |||||| ||||| ||| || |||| |||
Sbjct 1555 AACCTGGTTCCCTTTTTGTAATCT-CTAATGGTCTTCTTGCATTTGTT-GGCAAGAGACC 1612
Query 1543 AAAGTTGTGATTACGTTGCAAAGACTAAACCTT 1575
|||| ||||||||| ||||||||| ||||||||
Sbjct 1613 AAAGATGTGATTACATTGCAAAGAGTAAACCTT 1645
> Ahg947867 jgi|Araly1|947867|scaffold_704096.1
Length=1480
Score = 922 bits (499), Expect = 0.0
Identities = 796/931 (85%), Gaps = 53/931 (6%)
Strand=Plus/Plus
Query 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCAGAAGATGTGTTT 60
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 21 ATGATGAACAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAATATGTGTTT 80
Query 61 GCTGTTATTTCTCGTTTTCTTTCTCCAAGCGATATTTGCAATCTAATCTTGTGCGGCAAA 120
|||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 81 GCTGTTATCTCACGTTTTCTTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAA 140
Query 121 AGTCTGCCTGCCCTTGTCGATACCGAGAAGATGTGGCTTGTGCAATGTGAAGAAGTAAAG 180
||| | |||||||||| || |||| |||| ||||||||||||||||||| ||||||
Sbjct 141 AGTATTTGTGCCCTTGTCCATTCCGACAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
Query 181 GTTCTTCCTTTGTTGGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
Query 241 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAA-AACCC 299
||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||
Sbjct 261 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTGTTGGGATTTGGGTTCAA-AAGAACCC 319
Query 300 TGAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGAT 359
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 320 TGAACGTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGAT 379
Query 360 AATTCCACAA-AAGGTTGCTCCTTCGTGGATTCAAGA-GGACCGAGTTAAGTGGTCACCG 417
|||||| ||| ||| ||| ||||| |||||||||||| |||| | || |||||||||
Sbjct 380 AATTCCTCAAGAAG-TTGGTCCTTTGTGGATTCAAGAAGGACAAA-TTGTGTGGTCACCA 437
Query 418 GTGTTTGAGATAATCTGCGG-GTTTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGA 476
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 438 GTGTTTGAGATAATCTGCGGTGTT-GATGGCTCTAACGGTTTTTTCCTCCATGGAAGAGA 496
Query 477 CAAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATGT 536
| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 497 CGAAGAAGGCAGTTGTTTGTACCCTGGTTTCGTTATGGGCATCGAGAAGAGTTGCAATG- 555
Query 537 A-CTTC-AGCTCGATGTTGTGCCgaggcaagagaagagttcgtgc-aatgagattgagag 593
| |||| | ||||| |||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 556 AGCTTCTA-CTCGAAGTTGAGCCGAGGCAAGAGAAGAGTTCGT-CTAATGAGATTGAGAG 613
Query 594 aggagcctcaagaga-g-g--a--ggg-a--------gag--a----TTCCATTTTGGA- 631
| || ||||||| | | | | ||| | ||| | |||||||| |||
Sbjct 614 AAAAGACTCAAGAAAAGAGTTATCGGGGAAAATAAATGAGGGAGGGGTTCCATTT-GGAA 672
Query 632 -TGCTCG-CTTTTAGTGATAGAAAAAATTTGCTCAATATTGTGACAAGCCATGTAAGTCT 689
| || | |||| |||||||||| | || || |||| ||| ||| ||||||||||||
Sbjct 673 AT-CTAGGCTTT-AGTGATAGAAGGAGCTTACTTGATATAGTGGCAAACCATGTAAGTCT 730
Query 690 ACATGT-GGTGGAACCATTAA-ATGAAATGTTATTTCCCAC-AT-T-GAAATATGATGA- 743
|| ||| |||| ||||||||| | |||| |||||||||||| | | |||| |||||||
Sbjct 731 ACGTGTCGGTG-AACCATTAAGAGGAAA-GTTATTTCCCACCAGGTCGAAAGATGATGAC 788
Query 744 -A-GCAATGCTGGTTG-AACGCAGAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAA 800
| || || || ||| ||||||||||||| ||||||||||||| ||| |||||||| ||
Sbjct 789 GAAGCGGTGTTG-TTGGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGGGAA 847
Query 801 TTGGAAGAACATGAATTTGGAGGAGGATGATCAGTTGTGTTACAATCCCATGCAAGTAAA 860
|||||| |||||||||||||||||||||||||| | | ||| ||||| ||||| ||| |
Sbjct 848 CTGGAAGCACATGAATTTGGAGGAGGATGATCAGCTATATTATAATCCTATGCAGGTAGA 907
Query 861 AATAAACGAGATGTTGGAAAATCTCGGTGAT 891
||||| ||||| | ||||||||||||||||
Sbjct 908 CATAAATGAGATATGGGAAAATCTCGGTGAT 938
> Ahg494041 jgi|Araly1|494041|fgenesh2_kg.7__3474__AT5G39450.1
Length=1969
Score = 632 bits (342), Expect = 2e-180
Identities = 683/841 (81%), Gaps = 50/841 (6%)
Strand=Plus/Plus
Query 12 GGAATCGTTTGGAGCTTGCTTGCTTCT-TACGCTTCCAGAAGATGTGTTTGCTGTTATTT 70
|||||| ||||| |||||||||||||| | | |||||||||||||| ||||||||||
Sbjct 199 GGAATCATTTGGTGCTTGCTTGCTTCTGT-CTCTTCCAGAAGATGTAATTGCTGTTATAG 257
Query 71 CTCGTTTTCTTTCTCCAAGCGATATTTGCAATCTAATCTTGTGCGGCAAAAGTCTGC-CT 129
|||||||| | |||||||| || ||||||||||||| ||| ||| |||||||||| | |
Sbjct 258 CTCGTTTTGTATCTCCAAGAGACATTTGCAATCTAAGCTTATGCTGCAAAAGTCT-CTGT 316
Query 130 GCCCTTGTCGATACCGAGAA-GATGTGGCTTGTGCAATGTGAAGAAGTAAAGGTTCTTCC 188
| || | ||| | || || ||| ||||||||||||||||||| ||||||||||||| |
Sbjct 317 GAGGTTTTTGATTCAGA-AAGGATCTGGCTTGTGCAATGTGAAGTAGTAAAGGTTCTTTC 375
Query 189 TTTGT-TGGAAATAG-TCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTTTGTAGG 246
||| | | ||||| | |||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 376 TTTATCT-GAAAT-GATCCAATGGCGAATCGGAATCTCTTCTTATAAGGCGTTTTGTCGG 433
Query 247 TTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAAAACCCTGAACTT 306
||||||| |||||| ||||||| ||| ||||| ||||||| || |||||||||||||||
Sbjct 434 TTTCTTGGAGAGGTAATGAAGCCTCTTGTTGGGGTTTGGGTTCACCAAAACCCTGAACTT 493
Query 307 GGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAATTCCA 366
||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||
Sbjct 494 GGGAATGTTGTTTATGTAATGCCTGGTTTTTTATCCGTTGTTGGGTGTCGGATAATTCCA 553
Query 367 CAAAAGGTTGCTCCTTC-GTGGATTCAAGAGGAC-CGAGTTAAGTGGTCACCGGTGTTTG 424
||| |||||| ||||| | ||||| | |||| | ||||||| ||||||||| |||||||
Sbjct 554 CAAGAGGTTGGTCCTTTAG-GGATTGAGGAGG-CTCGAGTTATGTGGTCACCTGTGTTTG 611
Query 425 AGATAATCTGCGGGTTTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGACA-AAGAA 483
||||||||||||| |||||||||||| | |||||||||||||||||||||| || ||
Sbjct 612 AGATAATCTGCGGTTTTGATGGCTCTGCCAAGTTTTTCCTCCATGGAAGAGACGGAA-AA 670
Query 484 G-GCAGTTGCT---TGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATGTACT 539
||| ||||| || | |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 671 CTGCA-TTGCTGCCTGCATCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGTAATGTGCT 729
Query 540 TC-AGCTCGATGTTGTGCCgaggcaagagaag-agttcgtgcaatgagattgagagag-g 596
| | ||||| |||| | |||||| ||||||| |||| ||||| ||||||||||| | |
Sbjct 730 TTTA-CTCGAGGTTGAGACGAGGCGAGAGAAGGAGTT-GTGCAGTGAGATTGAGACTGTG 787
Query 597 a-gcctca-agagaggagggag---agaTT-CCATTTTGGATGCT-CGCTTTTAGTGATA 649
| | ||||| |||| | || || |||||| | | || | |||| ||| |||
Sbjct 788 TTGT-TGGGAGAGAC-AGGG-GTTCAG-TTACCATTTCGCAAACTACCCTTT-AGTTATA 842
Query 650 GAAAAAATTTGCT-CA-ATATTGTGACAAGC-CATGTAAGTCTACATGTGG-TGGAACCA 705
||| ||||| || || ||| ||||||||| | ||| || ||| ||| || | | |
Sbjct 843 GAAGGAATTTACTTCACATA--GTGACAAGCAC-TGTTGGTATACCTGTACCTG-ATCTA 898
Query 706 TTAAATGAAATGTTATTTCCCACATT-GAAATATGATGAAGCAATGCTGGT-TGAACGCA 763
| || ||||| |||||||||||| || |||| |||||||||| || || | ||||||||
Sbjct 899 TCAAGTGAAAGGTTATTTCCCAC-TTCGAAAGATGATGAAGCGGTGTTG-TCTGAACGCA 956
Query 764 GAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAATTGGAAGAACATGAATTTGGAGG 823
||||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||
Sbjct 957 GAACCATGCTCCTTAAAATGCATAAGTTTGGTGTTGATTGGAATCACATGAACCTGGAGG 1016
Query 824 A 824
|
Sbjct 1017 A 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5