BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39510.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494036 jgi|Araly1|494036|fgenesh2_kg.7__3469__AT5G39510.1 1434 0.0
> Ahg494036 jgi|Araly1|494036|fgenesh2_kg.7__3469__AT5G39510.1
Length=1026
Score = 1434 bits (776), Expect = 0.0
Identities = 955/1039 (92%), Gaps = 21/1039 (2%)
Strand=Plus/Plus
Query 26 ATCAAATCAATTCATCGTCGTCTTCCACAA-TTGTCATCACCGATCGATTTTCCGACTCC 84
|||||||||||||||||||||||||||||| || || |||||||||||||| || ||||
Sbjct 1 ATCAAATCAATTCATCGTCGTCTTCCACAACTT-TCTTCACCGATCGATTTACCTTCTCC 59
Query 85 GACGTACCTCCT-CTTCCCCGTTAC-CTTCTCAGAGTTTTTA-GTA-GTCTTCCTTTGGA 140
||||||||| || |||||||||| | || |||| || || | || || | |||| |
Sbjct 60 GACGTACCT-CTCCTTCCCCGTT-CGTTTATCAG-GTCTTAACCTACCTCAT-GTTTGAA 115
Query 141 ACAATGAGTGACGTGTTTGATGGATATGAGCGACAATACTGTGAGCTCTCGGCGAGTCTT 200
||||||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 116 ACAATGAGTGAAGCATTTGATGGATATGAGCGGCAATACTGTGAGCTCTCTGCGAGTCTT 175
Query 201 TCAAAGAAGTGTTCCTCTGCTATTTCGCTTGATGGAGAACAAAAGAAGCAGAAGTTGTCT 260
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 176 TCAAAGAAGTGTTCCTCTGCTGTTGCGCTTGATGGAGAACAAAAGAAGCAGAAGTTGTCT 235
Query 261 GAAATAAAATCCGGGCTGGAAAATGCAGAAGTATTGATTAGGAAAATGGATCTCGAGGCA 320
||||| ||||| || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 236 GAAATCAAATCTGGCCTGGATAATGCAGAAGTATTGATTAGGAAAATGGATCTTGAGGCA 295
Query 321 AGGACCCTTCCACCTAATCTTAAGTCCAGCCTCCTTGTCAAATTAAGAGAATTCAAGTCT 380
|||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 296 AGGAGCCTTCCACCAAATCTTAAGTCCAGTCTCCTTATCAAATTAAGAGAATTCAAGTCT 355
Query 381 GATCTGAACAATTTCAAAACTGAAGTGAAGAGAATCACATCTGGACAGTTGAACGCTGCT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GATCTGAACAATTTCAAAACTGAAGTGAAGAGAATCACATCTGGACAGTTGAACGCTGCT 415
Query 441 GCTCGTGATGAGTTGCTAGAAGCTGGTATGGCTGACACAAAGACGGCTTCAGCTGATCAG 500
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GCTCGAGATGAGTTGCTAGAAGCTGGTATGGCTGACACAAAGACGGCTTCAGCTGATCAA 475
Query 501 AGAGCAAGATTGATGATGTCAACTGAGCGTCTGGGCCGAACCACTGACAGAGTCAAGGAC 560
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 476 AGATCAAGATTGATGATGTCAACTGAGCGTCTCGGCCGAACCACTGACAGAGTCAAGGAC 535
Query 561 AGTCGTAGAACAATGATGGAGACTGAAGAAATCGGTGTTTCAATCCTCCAAGACTTGCAC 620
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 536 AGCCGTAGAACAATGATGGAGACTGAAGAGATCGGTGTTTCAATCCTCCAAGACTTGCAC 595
Query 621 GGTCAGAGACAGTCTCTCTTACGTGCCCACGAAACGCTT-CATGGAGTAGACGATAACAT 679
||||||||||||||||| |||| |||||||||||| || |||||||||||||||||| |
Sbjct 596 AGTCAGAGACAGTCTCTCCTACGCGCCCACGAAACG-TTGCATGGAGTAGACGATAACGT 654
Query 680 TGGAAAGAGCAAGAAGATCTTGACAGACATGACGAGGAGGATGAACAAGAACAAATGGAC 739
|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 655 TGGAAAAAGCAAGAAGATATTGACAGGCATGACGAGGAGGATGAACAAGAACAAATGGAC 714
Query 740 CATTGGAGCCATCATCA-TCGCATTGATTGCCGCCATTTTCATCATCTTGTACTTCAAAC 798
|||||||| || |||| | || ||||||||||| ||| || ||||||||||||||||||
Sbjct 715 AATTGGAGCTATTATCACT-GCTTTGATTGCCGCTATTATCGTCATCTTGTACTTCAAAC 773
Query 799 TCACCAAGTAAGCCTCTGTAACTAAATCCGACCAAATCAAAGAACAACGgttgttttcgt 858
||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||
Sbjct 774 TCACCAAGTAAGCCTCTGTAACTAAGTCCGACCAAATCAAAGAACT--G-TTGTGTTCGT 830
Query 859 tttgtgagtctttgatttatcctgtttcttctttttgtgtgaaaagttgt-tttgCCACC 917
|| |||| ||||||||||||| | |||||||||| |||||||||| |||| |||||||||
Sbjct 831 TT-GTGAATCTTTGATTTATCTTCTTTCTTCTTTCTGTGTGAAAATTTGTGTTTGCCACC 889
Query 918 TTTGTATTCTAAATTTGACCATACATACTTTAAGCAAGTAAAGCTTCGGCCTAAGTGTCA 977
||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 890 TTTGTATTCTAAATTTGACTATACATACATTAAGCAAGTAAAGCTTCGGCCT--GTGTCA 947
Query 978 CGTATATTGTTTATATTGTTCATATCAAATCCAGAACTATACATGGTTAAACATTGAGAT 1037
|||||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 948 CGTATATTGTGTATATTGTTCATATCGAATTCAGAACGATACATGGTTAAACATTGAGAT 1007
Query 1038 TAAAAGCCTCAATTATTTC 1056
|||||||||||||||||||
Sbjct 1008 TAAAAGCCTCAATTATTTC 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5