BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39520.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947863 jgi|Araly1|947863|scaffold_704092.1 1068 0.0
Ahg947862 jgi|Araly1|947862|scaffold_704091.1 580 5e-165
Ahg494036 jgi|Araly1|494036|fgenesh2_kg.7__3469__AT5G39510.1 158 9e-38
> Ahg947863 jgi|Araly1|947863|scaffold_704092.1
Length=736
Score = 1068 bits (578), Expect = 0.0
Identities = 680/729 (93%), Gaps = 8/729 (1%)
Strand=Plus/Plus
Query 58 AAGATCCAATCTTGGTG-AAATGGCGGTAAGCTCTGCGGTGTATTCATGCCCGGGGATGA 116
||||||||||||| ||| ||||||||||||| |||||||||||||| || || | ||||
Sbjct 1 AAGATCCAATCTTTGTGAAAATGGCGGTAAGTTCTGCGGTGTATTCGTGGCCTGCGATGC 60
Query 117 TCGGAAG-TTGTGGGCAGGTTAGATCAAAACGGTGGAGAGTGAAGTGTCACTTGTCACCT 175
| ||||| || || || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TAGGAAGTTTCCGGCCA-GTGAGATCAAAACGGTGGAGAGTGAAGTGTCAGTTGTCACCT 119
Query 176 GTAAAATCC-GCCAAGTATTCCTCTAAAATATCAACCGATATCGCTCTCCACGAGTCTCC 234
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTAAAA-CCGGCCAAATATTCCTCTAAAATATCAACCGATATCGCTCTCCACGAGTCTCC 178
Query 235 TCAGGCCTTGTTTGATGAATATTTGGAAGACAAATCAAGGGTTTTCGAAGCAATGTTTCC 294
|||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 179 TCAGGCTTTGTTCGATGAGTATTTAGAGGACAAATCGAGGGTTTTCGAAGCAATGTTTCC 238
Query 295 GGATAAACCCAAAAACTATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAAT 354
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGATAAACCCAAAAACCATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAAT 298
Query 355 AAAATTTTTCTTCCTCACTGCGTGTCCAGTGGTGGTCATGCGGATTAGATGCAAATCCAA 414
||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 299 AAAATTTTTCTTCATCACTGCGTGGCCAGTGGTGGTTATGCGGATTAGATGCAAATCCAA 358
Query 415 CGGTCAGGATTACCCATCAGACGTACCTCTACACATAACCAAAGTTCTTGAGCTCAACAT 474
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 CGGCCAGGATTACCCATCCGACGTACCTCTACACACAACCAAAGTTCTTGAGCTCAACAT 418
Query 475 GACGAAATGGGAGCTTCAAGGGCTTGACCGAGTAATGGAACCAACTGATTTCACTCTTGG 534
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 419 GACGAAATGGGAGCTTCAAGGGCTTGACCGAGTAATGGAACCATCTGATTTCACTCTCGG 478
Query 535 AGTAAAAGGAGCATTATACCCAGACCGGCGTGGAAGGCACACGAGGCTCAAAGGTCGACT 594
||| ||||||||||| ||||||||||| |||||||| || || |||||||||||||||||
Sbjct 479 AGTCAAAGGAGCATTGTACCCAGACCGACGTGGAAGACAAACAAGGCTCAAAGGTCGACT 538
Query 595 AGAAACGACCATTAGCTTCGTGCTTCCTTCAGTTCTCGCGCTTGTACCAGAAGATGTTAG 654
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 AGAAACGAGCATTAGCTTCGTGCTTCCTTCAGTTCTCGCACTTGTACCAGAAGATGTTAG 598
Query 655 GAGAAACATGGCCAATGCGATTTTGGCCGGTTTGGTGGATAACATGAAGCATAGGGTTAT 714
|||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||
Sbjct 599 GAGAAACATGGCCAATGCGATTTTGGCCAGTTTGGTGGAGAGCATGAAGCATAAGGTTAT 658
Query 715 TGAGAGCTTGGTCGCTGATTATAGCAAATTCAAATATGAAAGaaaaa-a-aCA-CTAGTA 771
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 659 TGAGAGCTTGGTCGCTGATTATAGCAAATTCAAATATGAAAGAAAAACACACAACTAGTA 718
Query 772 ATTGATATC 780
|||||||||
Sbjct 719 ATTGATATC 727
> Ahg947862 jgi|Araly1|947862|scaffold_704091.1
Length=769
Score = 580 bits (314), Expect = 5e-165
Identities = 536/641 (84%), Gaps = 23/641 (4%)
Strand=Plus/Plus
Query 132 AGGTTAGATC-A-AA-ACGGTGGAGAGTGAAGTGTCACTTGTC-ACCTGTAAAATCCGCC 187
|||| ||||| | || ||||| ||||||||||| || |||| || |||||| |||||
Sbjct 97 AGGTGAGATCAATAATACGGTCTAGAGTGAAGTGCCAAGTGTCTTCC-GTAAAACCCGCC 155
Query 188 A-AGTATTCCTCTAAAA-TATCAACCGATA-TCGCTCTCCACGAGTCTCCTCAGGCCTTG 244
| | ||||| || |||| | || || |||| || |||||||||||||||||||||| |||
Sbjct 156 ACA-TATTCATC-AAAACTCTCCACAGATATTC-CTCTCCACGAGTCTCCTCAGGCTTTG 212
Query 245 TTTGATGAATATTTGGAAGACAAATCAAGGGTT-TTCGAAGCAATGTTTCCGGATAAACC 303
|| ||||| ||||||||||| ||||||| | || ||||||||||||||||| ||||||||
Sbjct 213 TTCGATGAGTATTTGGAAGATAAATCAA-GATTATTCGAAGCAATGTTTCCAGATAAACC 271
Query 304 CAAAAACTATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAATAAAATTTTT 363
|| || ||||||||||| ||||||||||||||||| || |||||||||||||| || |
Sbjct 272 CAGAAGTTATAGGCTTAACGAGGAAGAATGGAGAATTCAGATGTTACCAATAAACTTCCT 331
Query 364 CTTCCTCACTGCGTGTCCAGTGGT-GGTCATGCGGATT-AGATGCAAATCCAACGGTCAG 421
|||||| |||| ||| || ||||| | | |||||| || ||||||||||||||||||||
Sbjct 332 CTTCCTTACTGTGTGGCCGGTGGTAGAT-ATGCGG-TTAAGATGCAAATCCAACGGTCAA 389
Query 422 GATTACCCATCAGACGTACCTCTACACATAACCAAAGTTCTTGAGCTCAACATGACGAAA 481
||||| || |||| |||||| || | |||||||||||||||||||||||||||| || |
Sbjct 390 GATTATCCGCCAGATGTACCTTTAGATATAACCAAAGTTCTTGAGCTCAACATGATGAGA 449
Query 482 TGGGAGCTTCAAGGGCTTGACCGAGTAATGGAACCAACTGATTTCACTCTTGGA-GTAAA 540
||| ||||| |||||||||| |||||||||||||| ||||||||| | ||||| || ||
Sbjct 450 TGGAAGCTTAAAGGGCTTGATCGAGTAATGGAACCGTCTGATTTCAGT-TTGGAAGTCAA 508
Query 541 AGGAGCATTATACCCAGACCGGCGTGGAAGGCACACGAGGCTCAAAGGTCGACTAGAAAC 600
||||||||| ||||| ||||| | |||| ||| || ||||||| ||||| |||||| |
Sbjct 509 AGGAGCATTGTACCCTGACCGAAGAGGAAAGCAAACAAGGCTCAGAGGTCAACTAGAGAT 568
Query 601 GACCATTAGCTTCGTGCTTCCTTCAGTTCTCGCGCTT-GTACCAGAAGATGTTAGGAGAA 659
|| ||| ||||| ||||||||| | ||||| | | || ||||| ||||||||| ||||||
Sbjct 569 GAACATAAGCTTTGTGCTTCCTCCGGTTCTTGAG-TTAGTACCTGAAGATGTTCGGAGAA 627
Query 660 ACATGGCCAATGCGATTTTGGCCGGTTTGGTGGATAACATGAAGCATAGGGTTATTGAGA 719
|| ||||||||||| ||||| ||||||| ||||| ||||||||||||| ||||| || ||
Sbjct 628 ACTTGGCCAATGCGGTTTTGACCGGTTTAGTGGAAAACATGAAGCATAAGGTTAATGGGA 687
Query 720 GCTTGGTCGCTGATTATAGCAAATTCAA-ATATGAAAGaaa 759
||||| | ||||||||||||| ||||| | ||||||||||
Sbjct 688 GCTTGCTTGCTGATTATAGCAGGTTCAAGA-ATGAAAGAAA 727
> Ahg494036 jgi|Araly1|494036|fgenesh2_kg.7__3469__AT5G39510.1
Length=1026
Score = 158 bits (85), Expect = 9e-38
Identities = 98/104 (94%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 851 GAAATAATTGAGGCTTTTAATCTCAATGTTTAACCATGTATAGTTCTGGATTTGATATGA 910
||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct 1026 GAAATAATTGAGGCTTTTAATCTCAATGTTTAACCATGTATCGTTCTGAATTCGATATGA 967
Query 911 ACAATATAAACAATATACGTGACACTTAGGCCGAAGCTTTACTT 954
|||||||| |||||||||||||||| |||||||||||||||||
Sbjct 966 ACAATATACACAATATACGTGACAC--AGGCCGAAGCTTTACTT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5