BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39550.1
Length=2187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908084 jgi|Araly1|908084|Al_scaffold_0002_1165 2244 0.0
Ahg908083 jgi|Araly1|908083|Al_scaffold_0002_1164 2228 0.0
Ahg315436 jgi|Araly1|315436|fgenesh1_pm.C_scaffold_2000469 946 0.0
Ahg338526 jgi|Araly1|338526|fgenesh1_pg.C_scaffold_2000625 658 0.0
Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1 508 5e-143
> Ahg908084 jgi|Araly1|908084|Al_scaffold_0002_1165
Length=1869
Score = 2244 bits (1215), Expect = 0.0
Identities = 1591/1770 (90%), Gaps = 35/1770 (2%)
Strand=Plus/Plus
Query 136 ATGGCGATTGAAACTCAGCTTCCTTGCGACGGTGACGGTGTGTGTATGCGGTGTCAGGTG 195
|||||| |||| ||||| ||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1 ATGGCGCCTGAAGCTCAGTTTCCTTGCGACGGAGACGGTGTATGTATGCGGTGCCAGGTG 60
Query 196 AATCCTCCGTCAGAAGAGACTCTCACTTGTGGCACGTGCGTCACTCCATGGCACGTGCCG 255
|| |||||| |||||||||||||||| ||||||||||||||||| || ||||||||| ||
Sbjct 61 AAACCTCCGGCAGAAGAGACTCTCACGTGTGGCACGTGCGTCACGCCTTGGCACGTGTCG 120
Query 256 TGTCTCCTCCCCGAATCACTCGCTTCTTCCACTGGAGAGTGGGAGTGTCCCGATTGCTCC 315
|||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 121 TGTCTCCTTCCAGAATCACTCTCTTCTTCCACTGGAGAGTGGCAGTGTCCCGATTGCTCT 180
Query 316 GGCGTTGTCGTTCCCTCCGCCGCTCCGGGTACCGGAAACGCT----C--GACCTGAATCT 369
|||| ||||||||||||||||| ||||| ||||||||||||| | ||| ||||||
Sbjct 181 GGCGATGTCGTTCCCTCCGCCGTTCCGGTTACCGGAAACGCTAACGCTGGACTTGAATCA 240
Query 370 TCCGGTTCAGTTCTCGTTGCTGCGATCCGTGCGATTCAGGCTGATGAGACTTTAACCGAA 429
||||||||||||||||| || ||||||||||||||||||||||||| || ||| || |||
Sbjct 241 TCCGGTTCAGTTCTCGTAGCAGCGATCCGTGCGATTCAGGCTGATGTGAATTTGACGGAA 300
Query 430 GCTGAGAAAGCCaaaaaaaGGCAGAAACTGATGAGTGGGGGTGGTGACGATGGTGTCGAT 489
|||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||
Sbjct 301 GCTGAGAAAGCCAAAAGGAGGCAGAAACTGATGAGTGGTGGTGGTGACGATCGTCTCGAT 360
Query 490 GAAGAAGAGAAGAAGAAGTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGA 549
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGAAGACAAGAAGAAGCTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGA 420
Query 550 CCTATCACGACACCGTGTGGGCACAATTTCTGTTTGAAATGTTTCGAGAAATGGGCAGTA 609
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||
Sbjct 421 CCTATCACGACACCGTGTGGGCACAACTTCTGCTTGAGATGTTTCGAGAAATGGG---TA 477
Query 610 GGTCAAGGGAAGCTAACTTGTATGATATGCCGAAGCAAAATTCCGAGACATGTGGCAAAA 669
||||||||||||||||||||| ||| |||||||| ||||||||||| | ||||||| ||
Sbjct 478 GGTCAAGGGAAGCTAACTTGTGTGACATGCCGAACCAAAATTCCGAAAAATGTGGCGCAA 537
Query 670 AATCCTCGCATCAACTTAGCTCTAGTTTCTGCTATTCGTTTAGCAAATGTTACCAAATGT 729
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 538 AATCCTCGCATCAACTTAGCTCTAGTCTCTGCTATTCGTTTAGCAAGTGTTACCAAATGT 597
Query 730 TCTGTTGAGGCAACTGCAGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAG 789
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTGTTGATGCAACTGCGGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAG 657
Query 790 AAAGCATTTACTACCGAGCGGGCAGTAAAAA--CTGGGAAAGCTAATGCTGCTAGCGGTA 847
||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 658 AAAGCCTTTACTACCGAGCGGGC--TAAAAAGACTGGGAAAGCTAATGCTGCTAGCGG-A 714
Query 848 AGTTTTT-TGTGACAATACCTCGTGATCATTTTGGTCCCATACCAGCTGAGAATGATGTC 906
|| ||| ||| ||| ||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 715 AGGATTTATGTCACAGTACCTGGTGATCATTTTGGTCCCATACCAGCTGAAAATGATCCC 774
Query 907 ACTAGAAAGCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAG 966
||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 775 ACTAGGAATCAAGGTGTTTTGGTTGGAGAATCTTGGGTGGACAGGCAAGAATGTAGGCAG 834
Query 967 TGGGGAGCTCATTTCCCGCATATTGCTGGCATTGCCGGGCAATCAGCGGTTGGAGCTCAG 1026
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 835 TGGGGAGCTCATTTCCCGCATGTTGCTGGCATTTCCGGGCAATCAGCGGTTGGAGCTCAG 894
Query 1027 TCTGTGGCCCTCTCTGGAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTAC 1086
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 TCTGTGGCGCTCTCTGGAGGTTATGATGATGATGAGGATCATGGTGAATGGTTTCTCTAC 954
Query 1087 ACAGGAAGTGGTGGAAGGGATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCT 1146
|||||||||||||||||||||||| | ||||||||||||| |||||||| |||||| |||
Sbjct 955 ACAGGAAGTGGTGGAAGGGATCTCGGAGGAAACAAAAGAACTAACAAGATACAGTCTTCT 1014
Query 1147 GACCAGGCGTTTA-AAAACATGAATGAATCTCTAAGACTTAGTTGCAAAATGGGCTATCC 1205
|||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1015 GACCAGTCGTTTGCAAAA-ATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCC 1073
Query 1206 TGTCCGAGTTGTCAGGTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGT 1265
||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 1074 TGTCCGAGTTGTCAGGTCTCACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGT 1133
Query 1266 GAGATATGATGGGGTCTATCGAATTGAGAAGTGCTGGAGTAATGTTGGAGTACAGGGTTC 1325
|||||| ||||||||||| ||||| |||||||||||||| || |||||| ||||||||||
Sbjct 1134 GAGATACGATGGGGTCTACCGAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTC 1193
Query 1326 TTTTAAGGTCTGTCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAG 1385
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTATAAGGTCTGTCGTTACTTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAG 1253
Query 1386 TGATGAGCATGGCGATCGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGACTGCTGC 1445
||||||||||||||||||||||||||| ||||||||| |||| |||||| ||| ||| |
Sbjct 1254 TGATGAGCATGGCGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAAGCTAC 1313
Query 1446 TGACCTGTTTGTGAGAAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTG 1505
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TGACCTGTTTGTGAGAAAGGATAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTG 1373
Query 1506 GAAATGGATGAAGTCTCCTCCTGTTAGCAGAA----TG--GCT--TT-GGATCCTGAGGA 1556
|||||||||||||||||| ||||||||||||| || ||| || ||||||||||||
Sbjct 1374 GAAATGGATGAAGTCTCCACCTGTTAGCAGAAAGGCTGTTGCTGCTTTGGATCCTGAGGA 1433
Query 1557 GAGGAAGAAGAATAAGAGAGCAAAAAATACTA-TGAAGGCCAGACTTCTGAAAGAATTTA 1615
|||||||| | || || ||||||||| | | || | |||||||| ||||||||
Sbjct 1434 GAGGAAGATCATTAGGAAAGCAAAAAACGGAAAT-AA--C-AGACTTCTCAAAGAATTCG 1489
Query 1616 GTTGCCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACACAACT 1675
| ||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 1490 GCTGCCAAATCTGTCGGAAAGTGCTGAGTTTTCCAGTGACGACCCCTTGTGCTCACAACT 1549
Query 1676 TCTGCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGAAGCA 1735
|||||||||||||| | ||||| || ||||||||| | ||||| |||||||||||||||
Sbjct 1550 TCTGCAAAGCATGCCTGGAAGCTAAATTTGCTGGGGTCTCTCAAGTGAGAGAGAGAAGCA 1609
Query 1736 -ATGGCGGACGTAAACTACGTGCAAAGAAGAACATCATGACCTGCCCTTGCTGCACGACG 1794
| ||||| || | ||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1610 GA-GGCGGGCGCACACTACGTGCAAAGAAGAACATAATGACCTGTCCGTGCTGCACTACC 1668
Query 1795 GATCTCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGATGATGGA-GATAATAGA 1853
|| |||||||| ||||| ||||||||||||||||| ||||| |||||||| | || | ||
Sbjct 1669 GACCTCTCCGACTTTCTTCAAAACCCGCAGGTGAATAGAGAAATGATGGAAGTTA-TCGA 1727
Query 1854 GAATTTTAAGAAGAGTGAGGAAGAGGCTGA 1883
||| | ||||||| ||||||||||||||
Sbjct 1728 AAATCTGAAGAAGAAAGAGGAAGAGGCTGA 1757
> Ahg908083 jgi|Araly1|908083|Al_scaffold_0002_1164
Length=1857
Score = 2228 bits (1206), Expect = 0.0
Identities = 1586/1767 (90%), Gaps = 35/1767 (2%)
Strand=Plus/Plus
Query 136 ATGGCGATTGAAACTCAGCTTCCTTGCGACGGTGACGGTGTGTGTATGCGGTGTC-AGGT 194
|||||| |||| |||| ||||||||||||| ||||| || ||||||||||| | ||||
Sbjct 1 ATGGCGCCTGAAGTTCAGTTTCCTTGCGACGGAGACGGCGTATGTATGCGGTG-CAAGGT 59
Query 195 GAATCCTCCGTCAGAAGAGACTCTCACTTGTGGCACGTGCGTCACTCCATGGCACGTG-C 253
||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
Sbjct 60 GAAACCTCCGTCAGAAGAGACACTCACGTGTGGCACGTGCGTCACTCCCTGGCACGTGTC 119
Query 254 CGTGTCTCCTCCCCGAATCACTCGCTTCTTCCACTGGAGAGTGGGAGTGTCCCGATTGCT 313
| |||||||| || ||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 120 C-TGTCTCCTTCCTGAATCACTCTCTTCTTCCACTGGAGAGTGGCAGTGTCCCGATTGCT 178
Query 314 CCGGCGTTGTCGTTCCCTCCGCCGCTCCGGGTACCGGAAACGCTC-GACCTGAATCTTCC 372
|||||| ||||||| ||||||||| ||| | |||| |||||| || ||| |||||| |||
Sbjct 179 CCGGCGATGTCGTTTCCTCCGCCGTTCCAGTTACCAGAAACG-TCGGACTTGAATCATCC 237
Query 373 GGTTCAGTTCTCGTTGCTGCGATCCGTGCGATTCAGGCTGATGAGACTTTAACCGAAGCT 432
|||||||||||||| || |||||||||||||||||||||||| |||||| || ||||||
Sbjct 238 GGTTCAGTTCTCGTAGCAGCGATCCGTGCGATTCAGGCTGATCTGACTTTGACGGAAGCT 297
Query 433 GAGAAAGCCaaaaaaaGGCAGAAACTGATGAGTGGGGGTGGTGACGATGGTGTCGATGAA 492
||||||||||||| |||||| | || |||||||| |||||||||||| || ||||||||
Sbjct 298 GAGAAAGCCAAAAGGAGGCAGGAGCTCATGAGTGGTGGTGGTGACGATCGTCTCGATGAA 357
Query 493 GAAGAGAAGAAGAAGTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCT 552
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAAGACAAGAAGAAGTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCT 417
Query 553 ATCACGACACCGTGTGGGCACAATTTCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGT 612
||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||
Sbjct 418 ATCACGACACCGTGTGGGCACAACTTCTGCTTGAGATGTTTCGAGAAATGGG---TAGGT 474
Query 613 CAAGGGAAGCTAACTTGTATGATATGCCGAAGCAAAATTCCGAGACATGTGGCAAAAAAT 672
|||||||||||||||||||||| |||||||| ||||||||| | | |||| || ||||
Sbjct 475 CAAGGGAAGCTAACTTGTATGACATGCCGAACCAAAATTCCCAAAAATGTTGCGCGAAAT 534
Query 673 CCTCGCATCAACTTAGCTCTAGTTTCTGCTATTCGTTTAGCAAATGTTACCAAATGTTCT 732
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 535 CCTCGCATCAACTTAGCTCTAGTCTCTGCTATTCGTTTAGCAAGTGTTACCAAATGTTCT 594
Query 733 GTTGAGGCAACTGCAGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAA 792
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTTGAGGCAGCTGCGGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAA 654
Query 793 GCATTTACTACCGAGCGGGCAGTAAAAA--CTGGGAAAGCTAATGCTGCTAGCGGTAAGT 850
|| ||||||||||||||||| |||||| |||||||||||||||||||||| || |||
Sbjct 655 GCCTTTACTACCGAGCGGGC--TAAAAAGACTGGGAAAGCTAATGCTGCTAGTGG-AAGG 711
Query 851 TTTT-TGTGACAATACCTCGTGATCATTTTGGTCCCATACCAGCTGAGAATGATGTCACT 909
||| ||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 712 ATTTATGTCACAATACCTGGTGATCATTTTGGTCCCATACCAGCTGAAAATGATCCCACT 771
Query 910 AGAAAGCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGG 969
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 772 AGAAACCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGATTGTAGGCAGTGG 831
Query 970 GGAGCTCATTTCCCGCATATTGCTGGCATTGCCGGGCAATCAGCGGTTGGAGCTCAGTCT 1029
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 832 GGAGCTCATTTCCCGCATATTGCTGGCATTGCTGGGCAATCAGCGGTTGGAGCTCAGTCT 891
Query 1030 GTGGCCCTCTCTGGAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACA 1089
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 892 GTGGCGCTCTCTGGAGGTTATGATGATGATGAGGATCATGGTGAATGGTTTCTCTACACA 951
Query 1090 GGAAGTGGTGGAAGGGATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGAC 1149
||||||||||||||||||||| | ||||||||||||| |||||||| |||||| ||||||
Sbjct 952 GGAAGTGGTGGAAGGGATCTCGGAGGAAACAAAAGAACTAACAAGATACAGTCTTCTGAC 1011
Query 1150 CAGGCGTTTA-AAAACATGAATGAATCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGT 1208
||| ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1012 CAGTCGTTTGCAAAA-ATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGT 1070
Query 1209 CCGAGTTGTCAGGTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAG 1268
|||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 1071 CCGAGTTGTCAGGTCTCACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAG 1130
Query 1269 ATATGATGGGGTCTATCGAATTGAGAAGTGCTGGAGTAATGTTGGAGTACAGGGTTCTTT 1328
||| ||||||||||| ||||| |||||||||||||| || |||||| ||||||||||||
Sbjct 1131 ATACGATGGGGTCTACCGAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTCTTA 1190
Query 1329 TAAGGTCTGTCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGA 1388
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TAAGGTCTGTCGTTACCTATTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGA 1250
Query 1389 TGAGCATGGCGATCGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGACTGCTGCTGA 1448
|||||||||||||||||||||||| ||||||||| |||| |||||| ||| ||| ||||
Sbjct 1251 TGAGCATGGCGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAAGCTACTGA 1310
Query 1449 CCTGTTTGTGAGAAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAA 1508
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1311 CCTGTTTGTGAGAAAGGATAGTCCGTCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAA 1370
Query 1509 ATGGATGAAGTCTCCTCCTGTTAGCAGAA----TG--GCT--TT-GGATCCTGAGGAGAG 1559
||||||||||||||| ||||||||||||| || ||| || |||||||||||||||
Sbjct 1371 ATGGATGAAGTCTCCACCTGTTAGCAGAAAGGCTGTTGCTGCTTTGGATCCTGAGGAGAG 1430
Query 1560 GAAGAAGAATAAGAGAGCAAAAAATACTA-TGAAGGCCAGACTTCTGAAAGAATTTAGTT 1618
||||| | || || ||||||||| | | || | ||||||||||||||||| |||
Sbjct 1431 GAAGATCATTAGGAAAGCAAAAAACGGAAAT-AA--C-AGACTTCTGAAAGAATTCGGTT 1486
Query 1619 GCCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACACAACTTCT 1678
||||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1487 GCCAAATCTGTAAGAAAGTGCTGAGTTTTCCAGTGACGACGCCTTGTGCTCACAACTTCT 1546
Query 1679 GCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGAAGCA-AT 1737
||||||||||| | ||||| || ||||||||| | ||||| ||||||||||||||| |
Sbjct 1547 GCAAAGCATGCCTGGAAGCTAAATTTGCTGGGGTCTCTCAAGTGAGAGAGAGAAGCAGA- 1605
Query 1738 GGCGGACGTAAACTACGTGCAAAGAAGAACATCATGACCTGCCCTTGCTGCACGACGGAT 1797
||||| || | ||||||||||||||||||||| |||||||| || |||||||| || ||
Sbjct 1606 GGCGGGCGCACACTACGTGCAAAGAAGAACATAATGACCTGTCCGTGCTGCACTACCGAC 1665
Query 1798 CTCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGATGATGGA-GATAATAGAGAA 1856
|||||||| ||||| ||||||||||||||||| ||||| |||||||| | || | || ||
Sbjct 1666 CTCTCCGACTTTCTTCAAAACCCGCAGGTGAATAGAGAAATGATGGAAGTTA-TCGAAAA 1724
Query 1857 TTTTAAGAAGAGTGAGGAAGAGGCTGA 1883
| | ||||||| ||||||||||||||
Sbjct 1725 TCTGAAGAAGAAAGAGGAAGAGGCTGA 1751
> Ahg315436 jgi|Araly1|315436|fgenesh1_pm.C_scaffold_2000469
Length=1950
Score = 946 bits (512), Expect = 0.0
Identities = 1118/1399 (80%), Gaps = 88/1399 (6%)
Strand=Plus/Plus
Query 520 TGTTCTATT-TGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGTGGGCACAATTT 578
|||||| || || || |||||||| || |||||| | |||| ||| |||||||||||
Sbjct 427 TGTTCT-TTCTGTATGCAATTGCCTGAGAGACCTGTGACGAAACCATGTGGGCACAA-CG 484
Query 579 C-TGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGG-AAGCTAACTTGTATG-AT 635
| || ||||||||||| ||||| | || | | || | |||| |||| ||||||| | |
Sbjct 485 CTTGCTTGAAATGTTTTGAGAAGT-GG-A-TGGGGC-AGGGCAAGCGAACTTGT-GGTAA 539
Query 636 ATGCCGAAGCAAAATTCC-GAGACATGTGGCAAAAAATCCTCGCATCAACTTAG-CTCTA 693
|||||||||| |||||| |||| | |||| || ||||| || |||||| | | | ||
Sbjct 540 ATGCCGAAGCGTAATTCCGGAGA-AAATGGCTAAGAATCCCCGTATCAAC-TCGTCCCTT 597
Query 694 GTTTCTGCTATTCGTTTAGC-AAATGTTA-CCAAATGTTCTGTTGAGGCAACTGCAGCCA 751
|| ||||||||| | ||||| ||| | || | ||| || ||| || || ||| || |
Sbjct 598 GTGTCTGCTATTAGATTAGCGAAA-G-TATCTAAAAGTGCTGCTGCGGGTACTTCA---A 652
Query 752 AGGTTC-ATCATATT-ATCCGCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCG 809
||| || |||| || || |||| |||||||| || || ||||||||||| || |||||
Sbjct 653 AGG-TCTTTCAT-TTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGCG 710
Query 810 GGCAGTA-AAAACTGGGAAAGCTAATGCTGCTAGCGGTAA-GTTTTTTGTGACAATACCT 867
||| | ||||||||||| || || |||||||| || || | ||| ||| ||||||||
Sbjct 711 TGCA-AAGAAAACTGGGAAGGCGAACGCTGCTAGTGG-AAGGATTTATGTTACAATACCA 768
Query 868 CGTGATCATTTTGGTCCCATACCAGCTGAGAATGATGTCACT-AGAAAGCAAGGTGTTTT 926
| ||||| |||||||| ||||||||||| || ||| | | || || |||||| ||||
Sbjct 769 CCAGATCACTTTGGTCCTATACCAGCTGAAAACGAT-CCTGTCAGGAACCAAGGTCTTTT 827
Query 927 GGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGCTCATTTCCCGCA 986
|||||||||||| ||||| ||||| | ||||||||||||||||| ||||| ||||| ||
Sbjct 828 GGTTGGAGAATCCTGGGAAGACAGACTCGAGTGTAGGCAGTGGGGGGCTCACTTCCCACA 887
Query 987 TATTGCTGGCATTGCCGGGCAATCAGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAG 1045
| ||||||||||||| || |||||| | ||||||||| ||||| || ||||||||||
Sbjct 888 TGTTGCTGGCATTGCTGGACAATCA-AATTATGGAGCTCAATCTGTAGCACTCTCTGGAG 946
Query 1046 GTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGG 1105
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 947 GTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAG 1006
Query 1106 ATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGACCAGGCGTTT-AAAA-A 1163
|||||||||| |||||||| | ||| ||| | ||||| | ||| || ||| ||||
Sbjct 1007 ATCTCAGTGGCAACAAAAGGACTAATAAGGAGCAGTCCTTTGATCAAAAATTTGAAAAGT 1066
Query 1164 CATGAATGAA-TCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGT 1222
| | |||||| || |||||||||| |||||| |||| |||||||| |||||||||||||
Sbjct 1067 C-T-AATGAAGCCT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGT 1123
Query 1223 CTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAGATATGATGGGGTCT 1282
|| |||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 1124 CTCACAAGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGGTGT 1183
Query 1283 ATCGAATTGAGAAGTGCTGGAGTAATGTTGG-AGTACAGGGTTCTTTTAAGGTCTGTCGT 1341
| || || |||||||||||| | || ||||| | ||||||||||||| ||||||||||||
Sbjct 1184 ACCGGATCGAGAAGTGCTGGCGGAAAGTTGGTA-TACAGGGTTCTTTCAAGGTCTGTCGT 1242
Query 1342 TACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGAT 1401
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 1243 TACCTGTTTGTTAGATGTGATAATGAGCCAGCTCCATGGACTAGTGATGAGCATGGAGAT 1302
Query 1402 CGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAG-ACTG-CTGCTGACCTGTTTGTGA 1459
|| |||||||| ||||||||| |||| ||||| || | || | | |||||||||| ||
Sbjct 1303 CGCCCAAGACCTTTGCCTAATATTCCAGAGCT-GAATA-TGGCCACAGACCTGTTTGAGA 1360
Query 1460 GAAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGT-CGTTGGAAATGGATGAAG 1518
|||| || ||||||||||||||||| ||||||| ||||||| | ||||| ||||||||||
Sbjct 1361 GAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTC-TTGGAGATGGATGAAG 1419
Query 1519 TCTCCTCCTG-T--TA----G-CAG--AATGGCTTTGGATCCTGAGGAGAGGAAGA---- 1564
| || |||| | || | ||| |||| ||||||||||||||||||||| |
Sbjct 1420 CCGCCACCTGCTAGTAAAAAGTCAGTGAATGT-TTTGGATCCTGAGGAGAGGAAAACTTT 1478
Query 1565 -AG-AA-----TAAGAG--AGCAAAA---AATACTATGAAGGCCAGACTTCTGAAAGAAT 1612
|| || ||| || |||| | ||||| |||| ||| | ||||||||||||||
Sbjct 1479 GAGGAAAGCCATAA-AGGCAGCACACTCGAATACCATGAGGGCAAAACTTCTGAAAGAAT 1537
Query 1613 TTA-GTTGCCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACAC 1671
||| || |||| ||||||||| ||||||||| |||||||||||| ||||| ||||| ||
Sbjct 1538 TTAAGT-GCCAGATCTGTCGGCAAGTGCTGACTCTTCCAGTGACAACGCCGTGTGCTCAT 1596
Query 1672 AACTTCTGCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGA 1731
||||||||||| |||||||||||||| || |||||||||| ||| | | |||| ||||||
Sbjct 1597 AACTTCTGCAAGGCATGCTTAGAAGCCAAATTTGCTGGGAAAACGCTAGTGAGGGAGAGA 1656
Query 1732 AGCA-ATGGCGGACGTAAA-CTACGTGCAAAGAAGAACATCATGACCTGCCCTTGCT-GC 1788
|||| | || ||||| || ||||| ||| ||||||| | |||| |||||||| || ||
Sbjct 1657 AGCAGA-GGTGGACG-AACTCTACGAGCACAGAAGAATGTGATGAACTGCCCTT-CTTGC 1713
Query 1789 ACGACGGATC-TCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGA-GATGATGGAGA 1846
| || || | | ||||| |||||||| ||||| ||||| || ||||| | | ||||||
Sbjct 1714 CCCACTGA-CATTTCCGATTTTCTCCAGAACCCTCAGGTCAATAGAGAAG-TCATGGAGG 1771
Query 1847 TAATAGAGAATTTTAAGAA 1865
| ||||||| || |||||
Sbjct 1772 TCATAGAGAGGTTGAAGAA 1790
> Ahg338526 jgi|Araly1|338526|fgenesh1_pg.C_scaffold_2000625
Length=1971
Score = 658 bits (356), Expect = 0.0
Identities = 879/1121 (78%), Gaps = 77/1121 (7%)
Strand=Plus/Plus
Query 770 GCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCGGGCAGTAA-AAACT-GGGAA 827
|||| ||||||||||| || ||||||||||| ||||| || || ||| ||||| |||||
Sbjct 671 GCAATCAAGACCGTCCAGATAAAGCATTTACAACCGATCGAGC--TAAGAAACTAGGGAA 728
Query 828 AGCTAATGCTGCTAGCGGTAAGTTTTTTGTGACAATACCTCGTGATCATTTTGGTCCCAT 887
|| |||||| | ||||| ||| ||||||| ||||| || || ||||| |||||||| ||
Sbjct 729 TGCGAATGCTTCCAGCGGCAAGATTTTTGTAACAATCCCACGGGATCACTTTGGTCCTAT 788
Query 888 ACCAGCTGAGA-ATGATGTC-ACTAGAAAGCAAGGTGTTTTGGTTGGAGAATCTTGGGAG 945
||||||||| | ||||| | ||| || ||||||||||||||||||||||| ||| ||
Sbjct 789 ACCAGCTGA-ACATGAT-CCTGTTAGGAACCAAGGTGTTTTGGTTGGAGAATCCTGGAAG 846
Query 946 GACAGGCAAGA-GTG-TAGGCAGTGGGGAGCTCATTTCCCGCATATTGCTGGCATTGCCG 1003
| | | | | | | | | |||||||||| | ||| ||||| | | || |||||||||| |
Sbjct 847 GGCCGAC-ATACG-GCTCGGCAGTGGGGGGTTCACTTCCCACTTGTTTCTGGCATTGCTG 904
Query 1004 GGCAATCAGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAGGTTATGACGATGATGAG 1062
| ||| | | | ||||||||| ||||| | ||| ||||||||||||| |||||||||
Sbjct 905 GACAAGC-TAGTTATGGAGCTCAATCTGTTGTGCTCGCTGGAGGTTATGAGGATGATGAG 963
Query 1063 GATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGGATCTCAG---TGGAAAC 1119
|||||||| ||||||||||| |||||||||||||| ||||| |||||||| | | |||
Sbjct 964 GATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATCTCAGTACTCGCAAC 1023
Query 1120 AAAAGAATTAACAAG-AAACAGTCG-TCTGACCAGGCGTTT-AAAA-ACATGAATGAA-T 1174
||| | |||| || ||| | | ||| || ||| |||| | | ||||||
Sbjct 1024 TTAAGGACTAAC-AGCGTTCAG-GGTTTTGATCAAAAATTTGAAAAGTC-T-AATGAAGC 1079
Query 1175 CTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTTGGAAGGAGA 1234
|| |||||||||| |||||| |||| |||||||| |||||||||||||||| ||||| |
Sbjct 1080 CT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTTCCAAGGACA 1138
Query 1235 AGCGTTCTGCATATGCCCCTG-CTGA-AGGT-GTGAGATATGATGGGGTCTATCGAATTG 1291
|| ||||||||| ||||||| || | | | || ||||||||||| || || || |
Sbjct 1139 TGCATTCTGCATACGCCCCTGAGGGAGAATTACTAAGGTATGATGGGGTTTACCGCATCG 1198
Query 1292 AGAAGTGCTGGAGT-AATGTTGGAGTACAGGGTTCTTTTAAGGTCTGTCGTTACCTGTTT 1350
|||| || |||| | || ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1199 AGAAATGTTGGA-TCAAAGTTGGAGTACAGGGTTCTTATAAGGTCTGTCGTTTCCTGTTT 1257
Query 1351 GTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATCGTCCAAGA 1410
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1258 ATTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGAGATCGCCCAAGA 1317
Query 1411 CCGTTGCCTAATGTTCCGGAGCTTGAGACTG-CTGCTGACCTGTTTGTGAGAAAGGAGAG 1469
|| ||||||||||||||||||||| | | || | | |||| |||| |||||| || ||
Sbjct 1318 CCTTTGCCTAATGTTCCGGAGCTTAATA-TGGCCACAAACCTATTTGAGAGAAAAGAAAG 1376
Query 1470 TCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCTCCTCCTGT 1529
||||||||||||||| ||||||| ||||||||||||| |||||||||| | || ||||
Sbjct 1377 TCCATCATGGGATTTTGATGAAGGTGAGGGTCGTTGGCGATGGATGAAGCCGCCACCTGC 1436
Query 1530 TAGCAGAATGGC--TT--T---G----G-ATCCTGAGGAGAGGAA------GAAGAATA- 1570
||| |||| ||| || | | | |||||||||||||||| || ||| |
Sbjct 1437 TAGTAGAAAGGCAGTTAATAATGTTAAGGATCCTGAGGAGAGGAAATTTTTGAGGAA-AG 1495
Query 1571 --A-GAGA--G-CAAAA---AATACTATGAAGGCCAGACTTCTGAAAGAATTTA-GTTGC 1620
| || | | || ||||| |||| ||| ||||||||||||||||||| || ||
Sbjct 1496 CCATGACATCGGCACGGTCGAATACGATGAGGGCAAGACTTCTGAAAGAATTTAAGT-GC 1554
Query 1621 CAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACACAACTTCTGC 1680
|| ||||||||||||||||||| | ||| ||||| || |||||||| || |||||||||
Sbjct 1555 CAGATCTGTCGGGAAGTGCTGACTAATCCTGTGACAACACCTTGTGCTCATAACTTCTGC 1614
Query 1681 AAAGCATGCT-TAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGAAGCA-ATG 1738
|| || || | ||| | | || |||||||| | ||| | | ||||||||||||||| | |
Sbjct 1615 AAGGCTTG-TATAGTATCCAAATTTGCTGGCAAAACGCTAGTGAGAGAGAGAAGCAGA-G 1672
Query 1739 GCGGACGTAA-ACTACGTGCA-AAGAAGAACATCATGACCTGCCCTTGCTGCACGACGGA 1796
| ||||| || |||||| ||| || ||||| |||||| |||||||| ||| | || ||
Sbjct 1673 GTGGACG-AACACTACGCGCACAA-AAGAATGTCATGAAGTGCCCTTGTTGCCCAACAGA 1730
Query 1797 TC-TCTCC-GAGTTTCTCCAAAACCCGCAGGTGAACAGAGA 1835
| | | | || ||| |||||||||| ||||| || |||||
Sbjct 1731 -CAT-TGCTGAATTTATCCAAAACCCTCAGGTCAATAGAGA 1769
> Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1
Length=1524
Score = 508 bits (275), Expect = 5e-143
Identities = 788/1027 (77%), Gaps = 70/1027 (7%)
Strand=Plus/Plus
Query 519 TTGTTCTATT-TGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGTGGGCACAATT 577
||||||| || || | ||||||||| || ||||| | ||||||| ||||||||||| |
Sbjct 332 TTGTTCT-TTGTGTAATCAATTGCCTGATAGACCCGTTACGACACAATGTGGGCACAACT 390
Query 578 TCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAA-GCTAACTTGTATGATA 636
|||| || |||||||| ||||| | || | | | || |||||| | ||| ||| | |
Sbjct 391 TCTGCTTAAAATGTTTTGAGAAGT-GG-A-TTGATCGAGGGAATG-AAACGTGTGCAAAA 446
Query 637 TGCCGAAGCAAAATT-CCGAGACATGTGGCAAAAAATCCTCGCATCAACTTAG-CTCTAG 694
|| || ||| |||| |||| | | ||||| |||||||| | ||| | | | || |
Sbjct 447 TGTCGTAGCCCAATTCCCGATATA-ATGGCAGGCAATCCTCGTGTTAAC-TCGTCCCTCG 504
Query 695 TTTCTGCTATTCGTTTA-GCAAATGTTACCAAATGTTCTGTTG-AGGCAACTGCAGCCAA 752
| ||| ||| || ||| | ||| ||| | ||| || ||| || || || |||| ||
Sbjct 505 TGCCTGTTATCCG-TTATGTAAAAGTTGCTAAAGGTGCTGGTGCTGG-AAATGCA---AA 559
Query 753 -GGTTCATCATATTATC-CGCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCGG 810
|| || | ||| | ||||||||| |||| ||||| || |||| ||| |||
Sbjct 560 TTTTTTTTC-TTTTA-CAAGCAACCAAGGTGGTCCAGAGAATGCTTTTAGAACCAAGC-- 615
Query 811 GCAGTAAAAACTGGGAAAGCTAATGCTGCTA-GCGGTAA-GTTTTTTGTGACAATACC-T 867
|| | ||||||||||| || |||||||| | | || || | | | ||| || |||| |
Sbjct 616 GC-GCAAAAACTGGGAGGGCGAATGCTGC-ATGTGG-AAGGATATATGTTACTGTACCAT 672
Query 868 CGTGATCATTTTGGTCCCATACCAGCTGAGAATGATGTCACT-AGAAAGCAAGGTGTTTT 926
|||||| |||||||| ||||||||||| |||||| | | || || |||||||||||
Sbjct 673 -TTGATCACTTTGGTCCTATACCAGCTGAAAATGAT-CCTGTCAGGAACCAAGGTGTTTT 730
Query 927 GGTTGGAGAATCTTGGGAGGA-C-AGGCAAGAGTGTAGGCAGTGGGGAGCTCATTTCCCG 984
||||||||||| ||| |||| | || | || ||| |||||||||| ||||| ||| |
Sbjct 731 AGTTGGAGAATCCTGGAAGGATCGAGTC--GAATGTCGGCAGTGGGGGGCTCACTTCGCA 788
Query 985 CATATTGCTGGCATTGCCGGGCAATCAGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGG 1043
||| || || ||||||| || ||||||| | |||||||| ||||| || |||||||
Sbjct 789 CATGTTTCTTGCATTGCTGGACAATCAG-ACTACGGAGCTCAATCTGTAGCAATCTCTGG 847
Query 1044 AGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAG 1103
||||||| | ||||| | ||||||||| ||||||||||| | |||||||| || ||||
Sbjct 848 AGGTTATAAGGATGACGTGGATCATGGAGAATGGTTTCTATTCACAGGAA--GG-GGAA- 903
Query 1104 GGATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGACCAGGCGTTT-AAAA 1162
|| | | | |||| ||| ||| | | || |||| |||| || |
Sbjct 904 GG-----A---G-------A-AATT-TCAA-TAAC-G-AG---GATCAGGAGTTTGAAGA 940
Query 1163 ACATGAATGAATCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGT 1222
| |||||||| || ||||| |||||||| ||||||| ||||| || |||||||||||||
Sbjct 941 A-TTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGTCAGGT 999
Query 1223 CTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAGATATGATGGGGTCT 1282
||| |||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1000 CTTACAAGGAGAAGCATTCTGCATATGCCCCTGAGGAAGGAGTGAGATATGATGGTGTCT 1059
Query 1283 ATC-GAATTGAGAAGTGCTGGAGTAATGTTGGAGTACAGGGTTCTTTTAAGGTCTGTCGT 1341
| | | || ||||| |||||| | || | | || | |||| ||| | |||||||||||||
Sbjct 1060 A-CAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCAGGATTCCTGTAAGGTCTGTCGT 1118
Query 1342 TACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGAT 1401
||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||
Sbjct 1119 TACCTGTTTGTGAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAATGGAGAT 1178
Query 1402 CGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGACTGCTGCTGACCTGTTTGTGAGA 1461
||||||||||| ||||||||| |||| |||||||| ||||| | |||||||||| ||||
Sbjct 1179 CGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAAACTGCCACAGACCTGTTTGAGAGA 1238
Query 1462 AAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCT 1521
||||| |||||||| |||||||| |||||||||||||| ||||||| |||||||||| ||
Sbjct 1239 AAGGAAAGTCCATCTTGGGATTTTGATGAAGCTGAGGGCCGTTGGAGATGGATGAAGCCT 1298
Query 1522 CCTCCTG 1528
|| ||||
Sbjct 1299 CCACCTG 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82313019445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5