BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39560.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947859 jgi|Araly1|947859|scaffold_704088.1 569 2e-161
Ahg947861 jgi|Araly1|947861|scaffold_704090.1 435 6e-121
Ahg945083 jgi|Araly1|945083|scaffold_701312.1 108 1e-22
> Ahg947859 jgi|Araly1|947859|scaffold_704088.1
Length=1202
Score = 569 bits (308), Expect = 2e-161
Identities = 551/663 (83%), Gaps = 38/663 (6%)
Strand=Plus/Plus
Query 81 TACCATTTCCGGCGACCATGATCTCCGAAGTTGAAC-AAC-CA-AAAGAGAAGAGAAGTT 137
||| |||||||||||||||||||||||||||||||| | | || ||||||||||||| ||
Sbjct 4 TACTATTTCCGGCGACCATGATCTCCGAAGTTGAACTACCGCAGAAAGAGAAGAGAAATT 63
Query 138 TGAGTTCTGAGCCACCGTCGTTGAT-GTCACTCCCATACGAAATCATAGAGAACATTCTT 196
|||||||||| ||||||||||| | || |||||| |||||||||||||||||||||||
Sbjct 64 TGAGTTCTGAACCACCGTCGTT-TTCATCGCTCCCAGACGAAATCATAGAGAACATTCTT 122
Query 197 GCACGTATCTCTAAATGGAGTTATCCTAAtctctctctcgtctccaaaagtttcctttct 256
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||
Sbjct 123 GCACGTATCTCTAAATGGACTTACCCTAATCTCTCTCTCGTCTCCAAAACATTCCTCTCT 182
Query 257 cttctctcttcCCCGCAACTATACAAGACGCGATCTGAAATCGGAACCACCGAGCCATGC 316
|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 183 CTTCTCTCTTCCCCGCAACTATACAAGACGCGATCTCACATCGGAACCACCGAACCATGC 242
Query 317 CTCTATTTCTGCTTGGAATCAGC-TAACCATTCATCTC--CAC-AGTGGTACACTCTTTG 372
|||||| ||||||| || | || | | ||||||||| | | | |||| ||||||||
Sbjct 243 CTCTATCTCTGCTTAAAA-CTGCGTTATGATTCATCTCATCCCCAATGGTTTACTCTTTG 301
Query 373 GATGAAACCTGATGAAACCCTCACCGGTACCGGT-A--CTATACATGACTATTCGTTGAT 429
||||||||||||||||| ||||||| ||| ||| | |||| |||||||||||||||||
Sbjct 302 GATGAAACCTGATGAAAACCTCACCAGTAACGGCGAGACTATGCATGACTATTCGTTGAT 361
Query 430 TCCGCTAC-CT-T-CGTC-T-T-C---ACCAGTACT-TCGTAC-A-T-CCACGGTAGCGG 476
|||||||| || | | || | | | ||| ||||| | || | | |||| ||| | |
Sbjct 362 TCCGCTACACTCTTCTTCCTATTCTTCACCCGTACTATA-TAAGAATTCCACCGTATCTG 420
Query 477 TTGGTTCGGAAATCTACGTAATCGGTGGACACTTCAA--C-C-GCTCTTCCTCAGTTCGG 532
|||||||||||||||||||||||||||||| | || | | | | ||||| || ||||||
Sbjct 421 TTGGTTCGGAAATCTACGTAATCGGTGGACTCCTCCAGGCTCCG-TCTTCTTCTGTTCGG 479
Query 533 ATATTTGATTGTCGGAGTAACACGTGGCGTGACGGTCCTAACATGACGGTAGCTCGATCG 592
|| |||||||||||| | ||| ||||||||| || |||||||||||||||||||||||
Sbjct 480 ATCCTTGATTGTCGGATTCACATGTGGCGTGATGGGCCTAACATGACGGTAGCTCGATCC 539
Query 593 GATCCAGTCGCGGTTCT-CATCGACCAGAGAATATACGTCTTGGGAGGTCGCGAGA-TGG 650
|| ||| | | ||| | | |||| ||| |||||| ||| | |||||| || ||| ||
Sbjct 540 GAGCCAACCACTGTT-TACCTCGATGAGAAAATATATGTCATAGGAGGTTGCAAGAATG- 597
Query 651 ACGAGTCTGACGA-TTGGTTTGAGGTGTTCGACATCAAGACTCAGACTTGGAGAGCCTTG 709
| |||||| || | |||||| ||| | |||||||| ||||||||| |||||||||| |||
Sbjct 598 ATGAGTCT-ACCAATTGGTTAGAGATATTCGACATAAAGACTCAGTCTTGGAGAGCTTTG 656
Query 710 CCT 712
|||
Sbjct 657 CCT 659
Score = 215 bits (116), Expect = 8e-55
Identities = 352/457 (77%), Gaps = 52/457 (11%)
Strand=Plus/Plus
Query 823 TGCTTTGGAAGGAAAGCTTTACGTAGCGGCACAGATAAATGACTACACTTACGAGCCCAA 882
|||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 710 TGCTTTTAAAGGAAAGCTTTACGTAGCGGCAGAGACAAAAGACTACACTTACGAGCCCAA 769
Query 883 AGATGATACATGGAAAGTTGT-A-AG-CAAATCAAGTA-TAAGAAGAGTA-AAG-GTTTG 936
||||| ||||||||| || || | || ||||| | || | | |||| || ||| |||
Sbjct 770 AGATGGTACATGGAATGTCGTAAGAGAGAAATCGA-TATTCA-AAGA-TATAAGACATTG 826
Query 937 GTGTGTGATAGAGAATGTAATGTACGCTTGCCA-TGACG-T--CT-TTCTGAGGTGGTAT 991
||||||||||||| ||||||||||| |||| || | ||| | | || | | |||||||
Sbjct 827 GTGTGTGATAGAGGATGTAATGTACTCTTG-CACTTACGTTGGGTCTT-TAATGTGGTAT 884
Query 992 GA-TTACGAGGATAGACG-GTGGAGAGAGATCCAGGGTTTGGAA-GAA-TT-GTGTTACC 1046
|| || |||| |||| | ||||||||||||| ||||||| ||| ||| || || | |
Sbjct 885 GACTT-TGAGGGTAGA-GAGTGGAGAGAGATCAAGGGTTT-GAACGAATTTAATG-T-CG 939
Query 1047 ACCCTACGA-GGGGTTT--CAGTG-GGGC-G--GAAAGAATAGTTAACTATGGTGGGAAA 1099
|| ||| | || ||| | | || | | | |||||||||||||||||||||||
Sbjct 940 GCCTTAC-ATGGTATTTAAAAAAGAGGTCTGTCCATGGAATAGTTAACTATGGTGGGAAA 998
Query 1100 CTTGTAGTTATGTGGCGTCCGGTGC-A-AA-GC-GACGGAAAAG-ATAAAAT--TGAAAT 1152
||||||||||| ||| | | | || | || | ||||| |||| || ||| | |||
Sbjct 999 CTTGTAGTTATATGGAGGCAG-TGGTATAATGATGACGGCAAAGGATGGAATACT-AAAG 1056
Query 1153 TTG-GTGTGCTC-A-GATTGCGTTAGAGAAGCGC-AGTAAAGATGAGATCTGGGGTAAGA 1208
||| || | ||| | |||||| |||||||||||| | |||||||||||| ||||||||||
Sbjct 1057 TTGAGT-T-CTCTAAGATTGCATTAGAGAAGCGCCA-TAAAGATGAGATTTGGGGTAAGA 1113
Query 1209 TAGAGTGGATTAATTCTGTGCTT-ACGGTCCCCAAGT 1244
|||||| ||||| |||||| | | | |||||||||
Sbjct 1114 CGGAGTGGGTTAATACTGTGCCTGA-GATCCCCAAGT 1149
> Ahg947861 jgi|Araly1|947861|scaffold_704090.1
Length=1185
Score = 435 bits (235), Expect = 6e-121
Identities = 478/590 (81%), Gaps = 38/590 (6%)
Strand=Plus/Plus
Query 154 GTCGTTGATGTCACTCCCATACGAAATCATAGAGAACATTCTTGCACGTATCTCTAAATG 213
|||||| |||||||||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct 63 GTCGTTCTTGTCACTCCCGGATGAAATCATAGAGAATATTCTTGCACGCATCTCTAAATG 122
Query 214 GAGTTATCCTAAtctctctctcgtctccaaaagtttcctttctctt-ctctcttc-CCCG 271
|| ||| ||||||||||||||||||||||| || ||||| | | || |||||||| ||
Sbjct 123 GACTTACCCTAATCTCTCTCTCGTCTCCAAGAGATTCCTCTAT-TTCCTCTCTTCTCCTA 181
Query 272 CAACTATACAAGACGCGATCTGAAATCGGAACCACCGAGCCATGCCTCTATTTCTGCTTG 331
| ||||||||||| |||||| | |||||||||||||| |||||||||||||||| |||
Sbjct 182 C-TCTATACAAGACTCGATCTCACATCGGAACCACCGAACCATGCCTCTATTTCTTCTT- 239
Query 332 GAATCAGC-TAACCATTCATC---TCCACAGTGGTACACTCTTTGGATGAAACCTGATGA 387
|| | || | | ||||||| ||| || |||| |||||||||||||||||||||||
Sbjct 240 AAAACTGCGTTATAATTCATCTGATCCCCAATGGTTTACTCTTTGGATGAAACCTGATGA 299
Query 388 AACCCTCACCGGT-AC--CG-GTACTATACATGACTATTCGTTGATTCCGCT--A--C-- 437
|| ||||||| || || || | ||||| ||||||||||||| ||||||||| | |
Sbjct 300 AAACCTCACCAGTAACGGCGAG-ACTATGCATGACTATTCGTCGATTCCGCTACACTCTT 358
Query 438 CTT-C--GTCTTCACCAGTA-CTTCGTACA-TCCACGGTAGCGGTTGGTTCGGAAATCTA 492
||| | |||||||| ||| | | || | ||||| || || |||||||||||||||||
Sbjct 359 CTTCCTATTCTTCACCCGTACCAT-ATA-AGTCCACCGTCGCCGTTGGTTCGGAAATCTA 416
Query 493 CGTAATCGGTGG-A-CACTTCA---ACCGCTCTTCCTCAGTTCGGATATTTGATTGTCGG 547
| |||||||||| | | | | ||| ||||| || |||||||| |||||||||||
Sbjct 417 CTTAATCGGTGGAATC-CCGGAGGCTCCG-TCTTCTTCTGTTCGGATCCTTGATTGTCGG 474
Query 548 AGTAACACGTGGCGTGACGGTCCTAACATGACGGTAGCTCGATCGGATCCAGTCGCGGTT 607
| | |||| ||||||||||| || ||||||||||||||||||||||||||||| || |||
Sbjct 475 ATTCACACATGGCGTGACGGGCCAAACATGACGGTAGCTCGATCGGATCCAGTAGCAGTT 534
Query 608 CT-CATCGACCAGAGAATATACGTCTTGGGAGGTCGCGAGA-TGGACGAGTCTGACGATT 665
| | |||| ||| |||||||||| | |||||| | | || || | ||||||| | |||
Sbjct 535 -TACCTCGATGAGAAAATATACGTCATAGGAGGTTGTGGGAATG-ATGAGTCTGCCAATT 592
Query 666 GGTTTGAGGTGTTCGACATCAAGACTCAGACTTGGAGAGCCTTGCCTAGT 715
|||| ||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 593 GGTTAGAGGTATTCGACATAAAGACTCAGACTTGGAGAGCTTTGCCTAGT 642
Score = 254 bits (137), Expect = 2e-66
Identities = 368/471 (78%), Gaps = 50/471 (11%)
Strand=Plus/Plus
Query 806 ATTAACGTCAACCCCAATGCTTTGGAAGGAAAGCTTTACGTAGCGGCACAGATAAATGAC 865
||||| ||||||||||||||||| |||| |||||||||||||||||| ||| ||| |||
Sbjct 676 ATTAAAGTCAACCCCAATGCTTTTAAAGGCAAGCTTTACGTAGCGGCAGAGACAAAAGAC 735
Query 866 TACACTTACGAGCCCAAAGATGATACATGGAAAGTTGT-A-AG-CAAATCAAGTA-TAAG 921
|||||||||||||||||||||| ||||||||| || || | || ||||| | || | |
Sbjct 736 TACACTTACGAGCCCAAAGATGGTACATGGAATGTCGTAAGAGAGAAATCGA-TATTCA- 793
Query 922 AAGAGTA-AAGGT-TTGGTGTGTGATAGAGAATGTAATGTACGCTTGCCA-TGACG-T-- 975
|||| || ||| | |||||||||||||||| ||||||||||| |||| || | ||| |
Sbjct 794 AAGA-TATAAGATATTGGTGTGTGATAGAGGATGTAATGTACTCTTG-CACTTACGTTGG 851
Query 976 CT-TTCTGAGGTGGTATGATTAC-GAGGATAGACG-GTGGAGAGAGATCCAGGGTTTGGA 1032
| || | | ||||||||| | | |||| |||| | |||||||||||| ||||||||||
Sbjct 852 GTCTT-TAATGTGGTATGACT-CTGAGGGTAGA-GAGTGGAGAGAGATAAAGGGTTTGGA 908
Query 1033 AGAA-TT-GTGTTACCACCCTACGA-GGGGTTT---CA-G-TG--GGGCGGAAAGAATAG 1082
||| || || | | || ||| | | ||| | | || | | | ||||||
Sbjct 909 CGAATTTACTG-T-CTGCCTTAC-ATCGTATTTAAAAAGGATGTATGTC-CATGGAATAG 964
Query 1083 TTAACTATGGTGGGAAACTTGTAGTTATGTGGCGTCCGGTGC-A-AA-GC-GACGGAAAA 1138
|||||||||||||||||||||||||||||||| | | | || | || | ||||| |||
Sbjct 965 TTAACTATGGTGGGAAACTTGTAGTTATGTGGAGGCAG-TGGTATAATGAAGACGGCAAA 1023
Query 1139 G-AT--AAAATTGAAATTTGGTGTGCTC-A-GATTGCGTTAGAGAAGCGC-AGTAAAGAT 1192
| | |||||| ||| |||| || ||| | ||||||||||||||||||| | |||||||
Sbjct 1024 GGACGGAAAATT-AAAGTTGG-GTTCTCTAAGATTGCGTTAGAGAAGCGCCA-TAAAGAT 1080
Query 1193 GAGATCTGGGGTAAGATAGAGTGGATTAATTCTGTGCTT-ACGGTCCCCAA 1242
||||| |||||||||| |||||| ||||| |||||||| | | |||||||
Sbjct 1081 GAGATTTGGGGTAAGACGGAGTGGGTTAATACTGTGCTTGA-GATCCCCAA 1130
> Ahg945083 jgi|Araly1|945083|scaffold_701312.1
Length=1202
Score = 108 bits (58), Expect = 1e-22
Identities = 122/152 (80%), Gaps = 8/152 (5%)
Strand=Plus/Plus
Query 820 CAATGCTTTGGAAGGAAAGCTTTACGT-AGCGGCACAGATAAATGACTACACTTACGAGC 878
||||||||| ||||||||||||| || || || | | | ||| ||||||||||||||||
Sbjct 714 CAATGCTTTCCAAGGAAAGCTTTATGTAAG-GGGAGATACAAAGGACTACACTTACGAGC 772
Query 879 CCAAAGATGATACATGGAAAGTTG-T-AAG-CAAATCAAGTATAAGAAGAGTAAAGGTTT 935
| ||||| | ||||||| |||||| | ||| ||| ||||| | | | || ||||||
Sbjct 773 CGAAAGAAGGTACATGGGAAGTTGTTAAAGAGAAAGCAAGT-GCA-TATA-TAGAGGTTT 829
Query 936 GGTGTGTGATAGAGAATGTAATGTACGCTTGC 967
|||||||||||||||||||||| || | ||||
Sbjct 830 GGTGTGTGATAGAGAATGTAATTTATGGTTGC 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5